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Conserved domains on  [gi|430734996|gb|AGA58941|]
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ABC-type sugar transport system, permease component [Thermobacillus composti KWC4]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 11-255 4.27e-57

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 185.68  E-value: 4.27e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  11 SWKRWLWSLIRLVLITGLSYVILYPILRKISTAIKDKTDLYSPIVVWIPEHFTMDNFRQAISIMDYWETLVNTFALAGTT 90
Cdd:COG0395    7 RRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  91 TLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMNLKDFslmgliplltgktvNLLNTYWPFILTSV 170
Cdd:COG0395   87 TVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQL--------------GLLNTYWGLILPYL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 171 TANSlkaGLFIFIFRQFFRGIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWNDSFFTTTYLTSSKVM 250
Cdd:COG0395  153 AFGL---PFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLR 229


                 ....*
gi 430734996 251 STQLA 255
Cdd:COG0395  230 TLPVG 234
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 11-255 4.27e-57

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 185.68  E-value: 4.27e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  11 SWKRWLWSLIRLVLITGLSYVILYPILRKISTAIKDKTDLYSPIVVWIPEHFTMDNFRQAISIMDYWETLVNTFALAGTT 90
Cdd:COG0395    7 RRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  91 TLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMNLKDFslmgliplltgktvNLLNTYWPFILTSV 170
Cdd:COG0395   87 TVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQL--------------GLLNTYWGLILPYL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 171 TANSlkaGLFIFIFRQFFRGIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWNDSFFTTTYLTSSKVM 250
Cdd:COG0395  153 AFGL---PFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLR 229


                 ....*
gi 430734996 251 STQLA 255
Cdd:COG0395  230 TLPVG 234
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 80-271 7.42e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.07  E-value: 7.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  80 LVNTFALAGTTTLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMNLKDFSLMGLIPLLTGKTVNLL 159
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 160 NTYWPFILTSVTANSLKAglfififrqffrgIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWNDSFF 239
Cdd:cd06261   81 LLLIAPFARLIRRAALES-------------IPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190
                 ....*....|....*....|....*....|..
gi 430734996 240 TTTYLTSSKVMSTQLASLPYNLSFFLEGGVAT 271
Cdd:cd06261  148 VSFLGGGEAPGPGTGLLLIFAILFPGDLGVAA 179
malG PRK10998
maltose ABC transporter permease MalG;
80-231 1.40e-10

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 60.88  E-value: 1.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  80 LVNTFALAGTTTLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMnLKDFsLMGLIPLLTgktvnlL 159
Cdd:PRK10998  85 LWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYA-LFDR-LGQYIPFIG------L 156

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 430734996 160 NTYWPFILTSVTANSLKaglfIFIFRQFFRGIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFV 231
Cdd:PRK10998 157 NTHGGVIFAYLGGIALH----VWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFI 224
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 100-271 4.07e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 40.75  E-value: 4.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  100 VAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMNLKDFSLMGLIPLLTgktVNLLNTYWPFILTSVTANSLKAgl 179
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPA---IILALLGWAGYARLIRRAALRS-- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  180 fififrqffrgIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWNDSFFTTTYLTSSKVMST-QLASLP 258
Cdd:pfam00528  78 -----------LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLlIEAILG 146

                         170
                  ....*....|...
gi 430734996  259 YNLSFFLEGGVAT 271
Cdd:pfam00528 147 YDYPEIQGPVLAA 159
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 11-255 4.27e-57

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 185.68  E-value: 4.27e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  11 SWKRWLWSLIRLVLITGLSYVILYPILRKISTAIKDKTDLYSPIVVWIPEHFTMDNFRQAISIMDYWETLVNTFALAGTT 90
Cdd:COG0395    7 RRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  91 TLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMNLKDFslmgliplltgktvNLLNTYWPFILTSV 170
Cdd:COG0395   87 TVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQL--------------GLLNTYWGLILPYL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 171 TANSlkaGLFIFIFRQFFRGIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWNDSFFTTTYLTSSKVM 250
Cdd:COG0395  153 AFGL---PFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLR 229


                 ....*
gi 430734996 251 STQLA 255
Cdd:COG0395  230 TLPVG 234
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 13-246 1.49e-31

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 119.10  E-value: 1.49e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  13 KRWLWSLIRLVLITGLSYVILYPILRKISTAIKDKTDLYSPIVvwIPEHFTMDNFRQAISIMDYWETLVNTFALAGTTTL 92
Cdd:COG3833   10 RRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSL--IPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  93 LTAASSAVAGYAFARLKFRG-SNLLFAGVVLTIlVPPTTILIPIYMNLKDFslmgliplltgktvNLLNTYWPFILTSVT 171
Cdd:COG3833   88 ISVFLAALAAYAFSRFRFKGrKAGLLALLLLQM-FPAFLALVALYLLLSAL--------------GLLNTLLGLILVYLG 152

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 430734996 172 ANSlkaGLFIFIFRQFFRGIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWNDSFFTTTYLTS 246
Cdd:COG3833  153 GAI---PFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRS 224
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 52-252 3.06e-17

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 79.77  E-value: 3.06e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  52 SPIVVWIPEHFTMDNFRQAISIMDYWETLVNTFALAGTTTLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPTTI 131
Cdd:COG1177   35 SWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVL 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 132 LIPIYMNLKDFSL-MGLIPLLTGKTVNLLntywPFILTSVTAnSLKaglfififrqffrGIPREIEEAAYIDGAGVGATF 210
Cdd:COG1177  115 GVALLLLFSALGLsGGLWGLILAHVVFTL----PFVVLVVLA-RLQ-------------GFDPSLEEAARDLGASPWQTF 176

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 430734996 211 ARIMLPNAVPAIVTVLLFSFVWQWNDsfFTTTYLTSSKVMST 252
Cdd:COG1177  177 RRVTLPLIAPGILAGALLAFTLSFDE--FVITLFLAGPGVTT 216
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
50-231 3.08e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 69.80  E-value: 3.08e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  50 LYSPIVVWIPEHFTMDNFRQAISIMDYWETLVNTFALAGTTTLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPT 129
Cdd:COG1178  310 LLWSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGI 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 130 TI---LIPIYMNLKDFSLMGLIPLLTgkTVNLLnTYWPFILTSVTAnSLKAglfififrqffrgIPREIEEAAYIDGAGV 206
Cdd:COG1178  390 VLglgLLLLFNRPLPLLLYGTLAILV--LAYVV-RFLPFALRSLEA-ALAQ-------------IDPSLEEAARSLGASP 452

                        170       180
                 ....*....|....*....|....*
gi 430734996 207 GATFARIMLPNAVPAIVTVLLFSFV 231
Cdd:COG1178  453 LRTLRRVTLPLLRPGLLAAALLVFV 477
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 80-271 7.42e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.07  E-value: 7.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  80 LVNTFALAGTTTLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMNLKDFSLMGLIPLLTGKTVNLL 159
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 160 NTYWPFILTSVTANSLKAglfififrqffrgIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWNDSFF 239
Cdd:cd06261   81 LLLIAPFARLIRRAALES-------------IPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190
                 ....*....|....*....|....*....|..
gi 430734996 240 TTTYLTSSKVMSTQLASLPYNLSFFLEGGVAT 271
Cdd:cd06261  148 VSFLGGGEAPGPGTGLLLIFAILFPGDLGVAA 179
malG PRK10998
maltose ABC transporter permease MalG;
80-231 1.40e-10

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 60.88  E-value: 1.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  80 LVNTFALAGTTTLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMnLKDFsLMGLIPLLTgktvnlL 159
Cdd:PRK10998  85 LWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYA-LFDR-LGQYIPFIG------L 156

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 430734996 160 NTYWPFILTSVTANSLKaglfIFIFRQFFRGIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFV 231
Cdd:PRK10998 157 NTHGGVIFAYLGGIALH----VWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFI 224
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 11-232 2.29e-10

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 60.16  E-value: 2.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  11 SWKRWLWSLIRLVLITGLsyvILYPILRKISTAIKDKTDLYSpivvwIPEHFTMDNFRQAISIMDYWETLVNTFALAGTT 90
Cdd:COG1176    8 RLRPLLLLLPALLWLLLF---FVLPLLLLLVYSFTTRDPYGG-----VVPGFTLENYARLFTDPLYLKVLLRTLWIALLT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  91 TLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPpttILIPIY--MNLkdFSLMGLIPL------LTGKTVNLLNTY 162
Cdd:COG1176   80 TLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTS---FLVRTYawIVL--LGRNGLLNSlllalgLIDEPLRLLYTE 154

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 430734996 163 WPFILTSVTAN------SLKAGLFififrqffrGIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVW 232
Cdd:COG1176  155 FAVVIGLVYVYlpfmvlPLYAALE---------KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIP 221
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-232 3.40e-09

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 56.68  E-value: 3.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996   1 MTIARLLSPESWKRWLWSLIRLVL---ITGLSYVILYPILRKISTAIKDkTDLYSPIVVWIpehfTMDNFRQAISIMDYW 77
Cdd:COG1175    1 MTTTTSAAARRRRRRRRLAAYLFLlpaLLLLLVFVLYPLLYTLYLSFTD-WNLLGPPPEFV----GLDNYARLFTDPRFW 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  78 ETLVNTFALAGTTTLLTAassaVAGYAFARL---KFRGSNLLFAGVVLTILVPPTTI-LIPIYMNLKDFSLM-GLIPLLT 152
Cdd:COG1175   76 NALGNTLLFTVVSVPLQL----VLGLLLALLlnrKLRGRGFFRTLFFLPWVISPVVVaLIWKWLFNPDYGLLnALLGALG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 153 GKTVNLLNTYWPFILTSVTANSLK----------AGLFififrqffrGIPREIEEAAYIDGAGVGATFARIMLPNAVPAI 222
Cdd:COG1175  152 LEPINWLGDPSLALPAVIIVTVWKgtgfnmliflAGLQ---------SIPRELYEAARIDGASPWQRFRRITLPLLRPTI 222

                        250
                 ....*....|
gi 430734996 223 VTVLLFSFVW 232
Cdd:COG1175  223 LFVLVLSTIG 232
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
11-231 1.08e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 55.94  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  11 SWKRWLWSLIRLVLITGLSYVILYPILRKISTAIKDKTDlyspivvwipehftmdNFRQAISIMDYWETLVNTFALAGTT 90
Cdd:COG1178    3 TRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDGLA----------------NFWALLSDPYLWRALGNTLLLALLV 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  91 TLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPP----------------TTILIPIYMNLKDFSLMGLIPLLtgk 154
Cdd:COG1178   67 TLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPyvvalawialfgpnglLNTLLRALFGLEPPDIYGLGGII--- 143

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 430734996 155 TVNLLNTYwPFILTSVTAnSLKAglfififrqffrgIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFV 231
Cdd:COG1178  144 LVLVLFNY-PYVYLLLRA-ALRS-------------IDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 75-230 6.00e-05

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 43.97  E-value: 6.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  75 DYWETLVNTFALAG-----TTTLLTAASSAVAG----YAFARLKFRGSNLLFAGVVLTILVPPTTILIpiyMNLKDFSLM 145
Cdd:COG0555   42 EFWAVLTSPRVLAAlklslGTALIAALINLVFGlplaWVLVRYRFPGKRLVDALVDLPFALPTAVAGI---ALLLLFGPN 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996 146 GLI-PLLTGKTVNLLNTYWP------FILTSVTANSLKAGLFififrqffrGIPREIEEAAYIDGAGVGATFARIMLPNA 218
Cdd:COG0555  119 GWLgQLLAPLGIKVAFTPLGivlaqtFVSLPFVVRTVQPVLE---------ELDPELEEAAATLGASRWQTFRRVILPLL 189

                        170
                 ....*....|..
gi 430734996 219 VPAIVTVLLFSF 230
Cdd:COG0555  190 LPALLTGFALAF 201
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
13-235 1.42e-04

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 42.80  E-value: 1.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  13 KRWLWSLIRLVLITGLSyVILYPILRKISTAIKDKTDLYSPIVVWIPEHFTMDNFRQ------AISIMDYWETLVNTFAL 86
Cdd:PRK10973   5 RRGLDIFSHTMLILGIA-VILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANiwvngvGNNSAPFGRMLLNSFVM 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  87 AGTTTLLTAASSAVAGYAFARLKFRGSNLLFAGVVLTILVPpttILIPIYMNLKDFSLMGLIPLLTGKTVNLLntywpfi 166
Cdd:PRK10973  84 AFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLP---VEVRIFPTVEVIANLKMLDSYAGLTLPLM------- 153

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 430734996 167 lTSVTANSLkaglfifiFRQFFRGIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWN 235
Cdd:PRK10973 154 -ASATATFL--------FRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWN 213
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 100-271 4.07e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 40.75  E-value: 4.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  100 VAGYAFARLKFRGSNLLFAGVVLTILVPPTTILIPIYMNLKDFSLMGLIPLLTgktVNLLNTYWPFILTSVTANSLKAgl 179
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPA---IILALLGWAGYARLIRRAALRS-- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430734996  180 fififrqffrgIPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSFVWQWNDSFFTTTYLTSSKVMST-QLASLP 258
Cdd:pfam00528  78 -----------LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLlIEAILG 146

                         170
                  ....*....|...
gi 430734996  259 YNLSFFLEGGVAT 271
Cdd:pfam00528 147 YDYPEIQGPVLAA 159
cysT CHL00187
sulfate transport protein; Provisional
 191-230 2.81e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 38.46  E-value: 2.81e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 430734996 191 IPREIEEAAYIDGAGVGATFARIMLPNAVPAIVTVLLFSF 230
Cdd:CHL00187 163 IEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTF 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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