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Conserved domains on  [gi|430009721|gb|AGA32473|]
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hypothetical protein TVNIR_0782 [Thioalkalivibrio nitratireducens DSM 14787]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4190 COG4190
Predicted transcriptional regulator, contains HTH domain [Transcription];
3-112 1.30e-41

Predicted transcriptional regulator, contains HTH domain [Transcription];


:

Pssm-ID: 443344  Cd Length: 121  Bit Score: 133.10  E-value: 1.30e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430009721   3 NKVTLTVSSREAVTNRTLAAFRG-------EPQGAVISFASPEMLWQTLTRKRWELLKAMTGRGPMTIRALSRELDRDVK 75
Cdd:COG4190    2 KTLKIGIASLEEFRARALAAARGadagekpEPAEPVLSFESPESLARVLTPKRLELLRAIAEEGPESIRELARRLGRDVK 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 430009721  76 GVHGDVHALLDAGVLDRTEEGRILFP---YDAVHVDFELE 112
Cdd:COG4190   82 NVHRDLKTLEELGLVELEEDGRAKRPvvpYDEIEIDFPLR 121
 
Name Accession Description Interval E-value
COG4190 COG4190
Predicted transcriptional regulator, contains HTH domain [Transcription];
3-112 1.30e-41

Predicted transcriptional regulator, contains HTH domain [Transcription];


Pssm-ID: 443344  Cd Length: 121  Bit Score: 133.10  E-value: 1.30e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430009721   3 NKVTLTVSSREAVTNRTLAAFRG-------EPQGAVISFASPEMLWQTLTRKRWELLKAMTGRGPMTIRALSRELDRDVK 75
Cdd:COG4190    2 KTLKIGIASLEEFRARALAAARGadagekpEPAEPVLSFESPESLARVLTPKRLELLRAIAEEGPESIRELARRLGRDVK 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 430009721  76 GVHGDVHALLDAGVLDRTEEGRILFP---YDAVHVDFELE 112
Cdd:COG4190   82 NVHRDLKTLEELGLVELEEDGRAKRPvvpYDEIEIDFPLR 121
HTH_20 pfam12840
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ...
 48-97 1.97e-03

Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.


Pssm-ID: 432824 [Multi-domain]  Cd Length: 61  Bit Score: 34.05  E-value: 1.97e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 430009721   48 RWELLKAMTGRGPMTIRALSRELDRDVKGVHGDVHALLDAGVLDRTEEGR 97
Cdd:pfam12840  12 RLRILRALVGDEPLTASELARRLDISRNTLSYHLRKLEEAGLVEVVREGR 61
 
Name Accession Description Interval E-value
COG4190 COG4190
Predicted transcriptional regulator, contains HTH domain [Transcription];
3-112 1.30e-41

Predicted transcriptional regulator, contains HTH domain [Transcription];


Pssm-ID: 443344  Cd Length: 121  Bit Score: 133.10  E-value: 1.30e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430009721   3 NKVTLTVSSREAVTNRTLAAFRG-------EPQGAVISFASPEMLWQTLTRKRWELLKAMTGRGPMTIRALSRELDRDVK 75
Cdd:COG4190    2 KTLKIGIASLEEFRARALAAARGadagekpEPAEPVLSFESPESLARVLTPKRLELLRAIAEEGPESIRELARRLGRDVK 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 430009721  76 GVHGDVHALLDAGVLDRTEEGRILFP---YDAVHVDFELE 112
Cdd:COG4190   82 NVHRDLKTLEELGLVELEEDGRAKRPvvpYDEIEIDFPLR 121
HTH_20 pfam12840
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ...
 48-97 1.97e-03

Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.


Pssm-ID: 432824 [Multi-domain]  Cd Length: 61  Bit Score: 34.05  E-value: 1.97e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 430009721   48 RWELLKAMTGRGPMTIRALSRELDRDVKGVHGDVHALLDAGVLDRTEEGR 97
Cdd:pfam12840  12 RLRILRALVGDEPLTASELARRLDISRNTLSYHLRKLEEAGLVEVVREGR 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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