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Conserved domains on  [gi|429316004|ref|YP_007183254|]
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COOH.NH2 ligase [Pseudomonas phage vB_PaeP_p2-10_Or1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COOH-NH2_lig super family cl16852
Phage phiEco32-like COOH.NH2 ligase-type 2; A family of COOH-NH2 ligases/GCS superfamily found ...
 137-213 1.79e-05

Phage phiEco32-like COOH.NH2 ligase-type 2; A family of COOH-NH2 ligases/GCS superfamily found in the neighborhood of YheC/D-like ATP-grasp and the CotE family of proteins in the firmicutes. Contextual analysis suggests that it might be involved in cell wall modification and spore coat biosynthesis.


The actual alignment was detected with superfamily member pfam14395:

Pssm-ID: 373045  Cd Length: 253  Bit Score: 44.96  E-value: 1.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429316004  137 GGHIHIGfadDLPVTKAncraVIQACDIYLGLASVLI-DGDTD--RKLLYGKAGACRYKPY-GVEYRTLSNfWIFSDELI 212
Cdd:pfam14395  94 GGHIHFS---GVPLTSR----LLRALDNYLALPLALIeDPERArrRRPRYGFLGDFRRKPHgGFEYRTLPS-WLVSPAIA 165


                  .
gi 429316004  213 K 213
Cdd:pfam14395 166 R 166
 
Name Accession Description Interval E-value
COOH-NH2_lig pfam14395
Phage phiEco32-like COOH.NH2 ligase-type 2; A family of COOH-NH2 ligases/GCS superfamily found ...
 137-213 1.79e-05

Phage phiEco32-like COOH.NH2 ligase-type 2; A family of COOH-NH2 ligases/GCS superfamily found in the neighborhood of YheC/D-like ATP-grasp and the CotE family of proteins in the firmicutes. Contextual analysis suggests that it might be involved in cell wall modification and spore coat biosynthesis.


Pssm-ID: 373045  Cd Length: 253  Bit Score: 44.96  E-value: 1.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429316004  137 GGHIHIGfadDLPVTKAncraVIQACDIYLGLASVLI-DGDTD--RKLLYGKAGACRYKPY-GVEYRTLSNfWIFSDELI 212
Cdd:pfam14395  94 GGHIHFS---GVPLTSR----LLRALDNYLALPLALIeDPERArrRRPRYGFLGDFRRKPHgGFEYRTLPS-WLVSPAIA 165


                  .
gi 429316004  213 K 213
Cdd:pfam14395 166 R 166
 
Name Accession Description Interval E-value
COOH-NH2_lig pfam14395
Phage phiEco32-like COOH.NH2 ligase-type 2; A family of COOH-NH2 ligases/GCS superfamily found ...
 137-213 1.79e-05

Phage phiEco32-like COOH.NH2 ligase-type 2; A family of COOH-NH2 ligases/GCS superfamily found in the neighborhood of YheC/D-like ATP-grasp and the CotE family of proteins in the firmicutes. Contextual analysis suggests that it might be involved in cell wall modification and spore coat biosynthesis.


Pssm-ID: 373045  Cd Length: 253  Bit Score: 44.96  E-value: 1.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429316004  137 GGHIHIGfadDLPVTKAncraVIQACDIYLGLASVLI-DGDTD--RKLLYGKAGACRYKPY-GVEYRTLSNfWIFSDELI 212
Cdd:pfam14395  94 GGHIHFS---GVPLTSR----LLRALDNYLALPLALIeDPERArrRRPRYGFLGDFRRKPHgGFEYRTLPS-WLVSPAIA 165


                  .
gi 429316004  213 K 213
Cdd:pfam14395 166 R 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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