NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|41819548|gb|AAS13295|]
View 

PspC domain protein [Treponema denticola ATCC 35405]

Protein Classification

PspC domain-containing protein( domain architecture ID 10005046)

PspC domain-containing protein similar to Escherichia coli envelope stress response membrane protein PspC that is involved in transcription regulation; the pspC gene is part of phage shock protein (psp) operon that may play a role in the competition for survival under nutrient- or energy-limited conditions

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PspC COG1983
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal ...
 2-46 8.23e-19

Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal transduction mechanisms];


:

Pssm-ID: 441586 [Multi-domain]  Cd Length: 65  Bit Score: 72.11  E-value: 8.23e-19
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*
gi 41819548  2 KKRLCKSSRDKKILGVCAGLAEYLGVDPVLIRLLWIIFALVVGSG 46
Cdd:COG1983  1 RKKLYRSRDDRVIAGVCAGLAEYFGIDPTLVRLIFVLLTLFGGAG 45
 
Name Accession Description Interval E-value
PspC COG1983
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal ...
 2-46 8.23e-19

Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal transduction mechanisms];


Pssm-ID: 441586 [Multi-domain]  Cd Length: 65  Bit Score: 72.11  E-value: 8.23e-19
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*
gi 41819548  2 KKRLCKSSRDKKILGVCAGLAEYLGVDPVLIRLLWIIFALVVGSG 46
Cdd:COG1983  1 RKKLYRSRDDRVIAGVCAGLAEYFGIDPTLVRLIFVLLTLFGGAG 45
PspC pfam04024
PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a ...
 3-46 6.77e-18

PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.


Pssm-ID: 461134  Cd Length: 57  Bit Score: 69.76  E-value: 6.77e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 41819548    3 KRLCKSSRDKKILGVCAGLAEYLGVDPVLIRLLWIIFALVVGSG 46
Cdd:pfam04024  1 KKLYRSRDDRMIAGVCGGLAEYFGIDPTLVRLLFVLLALFGGGG 44
phageshock_pspC TIGR02978
phage shock protein C; All members of this protein family are the phage shock protein PspC. ...
 2-46 3.50e-12

phage shock protein C; All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 132023  Cd Length: 121  Bit Score: 56.87  E-value: 3.50e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 41819548     2 KKRLCKSSRDKKILGVCAGLAEYLGVDPVLIRLLWIIFALVVGSG 46
Cdd:TIGR02978   1 RRELYRDPQNGKIAGVCAGLADYFGVEVWLVRILVVSALLFGGGF 45
PRK10697 PRK10697
envelope stress response membrane protein PspC;
13-43 1.29e-04

envelope stress response membrane protein PspC;


Pssm-ID: 182656  Cd Length: 118  Bit Score: 37.24  E-value: 1.29e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 41819548   13 KILGVCAGLAEYLGVdPV-LIRL---LWIIFALVV 43
Cdd:PRK10697  17 MVKGVCAGIAHYFDV-PVkLVRIivvLSIFFGLFV 50
 
Name Accession Description Interval E-value
PspC COG1983
Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal ...
 2-46 8.23e-19

Phage shock protein PspC (stress-responsive transcriptional regulator) [Transcription, Signal transduction mechanisms];


Pssm-ID: 441586 [Multi-domain]  Cd Length: 65  Bit Score: 72.11  E-value: 8.23e-19
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*
gi 41819548  2 KKRLCKSSRDKKILGVCAGLAEYLGVDPVLIRLLWIIFALVVGSG 46
Cdd:COG1983  1 RKKLYRSRDDRVIAGVCAGLAEYFGIDPTLVRLIFVLLTLFGGAG 45
PspC pfam04024
PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a ...
 3-46 6.77e-18

PspC domain; This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.


Pssm-ID: 461134  Cd Length: 57  Bit Score: 69.76  E-value: 6.77e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 41819548    3 KRLCKSSRDKKILGVCAGLAEYLGVDPVLIRLLWIIFALVVGSG 46
Cdd:pfam04024  1 KKLYRSRDDRMIAGVCGGLAEYFGIDPTLVRLLFVLLALFGGGG 44
phageshock_pspC TIGR02978
phage shock protein C; All members of this protein family are the phage shock protein PspC. ...
 2-46 3.50e-12

phage shock protein C; All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 132023  Cd Length: 121  Bit Score: 56.87  E-value: 3.50e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 41819548     2 KKRLCKSSRDKKILGVCAGLAEYLGVDPVLIRLLWIIFALVVGSG 46
Cdd:TIGR02978   1 RRELYRDPQNGKIAGVCAGLADYFGVEVWLVRILVVSALLFGGGF 45
PRK10697 PRK10697
envelope stress response membrane protein PspC;
13-43 1.29e-04

envelope stress response membrane protein PspC;


Pssm-ID: 182656  Cd Length: 118  Bit Score: 37.24  E-value: 1.29e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 41819548   13 KILGVCAGLAEYLGVdPV-LIRL---LWIIFALVV 43
Cdd:PRK10697  17 MVKGVCAGIAHYFDV-PVkLVRIivvLSIFFGLFV 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH