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Conserved domains on  [gi|417677|sp|P32969|]
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RecName: Full=Large ribosomal subunit protein uL6; AltName: Full=60S ribosomal protein L9

Protein Classification

large ribosomal subunit protein uL6( domain architecture ID 1903905)

large ribosomal subunit protein uL6 is a component of the large ribosomal subunit

CATH:  3.90.930.12
Gene Ontology:  GO:0003735|GO:0003723|GO:0006412
PubMed:  11114498

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PTZ00027 super family cl44316
60S ribosomal protein L6; Provisional
1-191 4.89e-83

60S ribosomal protein L6; Provisional


The actual alignment was detected with superfamily member PTZ00027:

Pssm-ID: 240234 [Multi-domain]  Cd Length: 190  Bit Score: 243.91  E-value: 4.89e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLlGKKKKRLRVDKWWGNRKELATVRTICSHVQNM 80
Cdd:PTZ00027   1 MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKL-SKDGKYIKVEMWFGTPSHLACIRTVCSHIKNM 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677     81 IKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAAL 160
Cdd:PTZ00027  80 MTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAAL 159
                        170       180       190
                 ....*....|....*....|....*....|.
gi 417677    161 IQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191
Cdd:PTZ00027 160 IHQSTLVRNKDIRKFLDGIYVSEKGTVDKDE 190
 
Name Accession Description Interval E-value
PTZ00027 PTZ00027
60S ribosomal protein L6; Provisional
1-191 4.89e-83

60S ribosomal protein L6; Provisional


Pssm-ID: 240234 [Multi-domain]  Cd Length: 190  Bit Score: 243.91  E-value: 4.89e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLlGKKKKRLRVDKWWGNRKELATVRTICSHVQNM 80
Cdd:PTZ00027   1 MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKL-SKDGKYIKVEMWFGTPSHLACIRTVCSHIKNM 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677     81 IKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAAL 160
Cdd:PTZ00027  80 MTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAAL 159
                        170       180       190
                 ....*....|....*....|....*....|.
gi 417677    161 IQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191
Cdd:PTZ00027 160 IHQSTLVRNKDIRKFLDGIYVSEKGTVDKDE 190
uL6_arch TIGR03653
ribosomal protein uL6, archaeal form; Members of this protein family are the archaeal form ...
10-184 1.45e-59

ribosomal protein uL6, archaeal form; Members of this protein family are the archaeal form ofribosomal protein uL6 (previously L9 in yeast and human). The top-scoring proteins not selected by this model are eukaryotic cytosolic uL6. Bacterial ribosomal protein L6 scores lower and is described by a distinct model. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274702 [Multi-domain]  Cd Length: 170  Bit Score: 183.64  E-value: 1.45e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      10 VDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKkkrLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFR 89
Cdd:TIGR03653   4 IEIPEGVSVTIEGNIVTVKGPKGEVTREFWYPGIEISVEDGK---VVIETDFARKKDKAMVGTFRSHIKNMIKGVTEGFE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      90 YKMRSVYAHFPINVVIQenGSLVEIRNFLGEKYIRRVRMRPGVACSVSQaqkDELILEGNDIELVSNSAALIQQATTVKN 169
Cdd:TIGR03653  81 YKMKVVYSHFPMQVKVE--GNKVIIENFLGEKAPRRAKILGGVKVKVKG---EEVIVEGIDKEDVGQTAANIEQATRIKG 155
                         170
                  ....*....|....*
gi 417677     170 KDIRKFLDGIYVSEK 184
Cdd:TIGR03653 156 RDPRVFQDGIYIVEK 170
Ribosomal_L6 pfam00347
Ribosomal protein L6;
99-178 1.61e-16

Ribosomal protein L6;


Pssm-ID: 425625  Cd Length: 78  Bit Score: 70.74  E-value: 1.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      99 FPINVVIQENGslVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDG 178
Cdd:pfam00347   1 IPVGVRVSLKG--VNLVLVKGPKGELTREIPPGVTVEVEGNKVTVIVVSGIDKEKVGQFAALIGTVRALIPNMGKGVTEG 78
RplF COG0097
Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
10-92 2.16e-11

Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L6P/L9E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439867 [Multi-domain]  Cd Length: 177  Bit Score: 59.64  E-value: 2.16e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677    10 VDIPENVDITLKGRTVIVKGPRGTLRRDFNHiNVELSLLGKK--------KKRLRvdKWWGnrkelaTVRticSHVQNMI 81
Cdd:COG0097   8 IPIPAGVEVTIDGNTVTVKGPKGELSRTLHP-DVKVKVEDNKltvtrpsdSKEAR--ALHG------TTR---ALINNMV 75
                        90
                ....*....|.
gi 417677    82 KGVTLGFRYKM 92
Cdd:COG0097  76 EGVTEGFEKKL 86
 
Name Accession Description Interval E-value
PTZ00027 PTZ00027
60S ribosomal protein L6; Provisional
1-191 4.89e-83

60S ribosomal protein L6; Provisional


Pssm-ID: 240234 [Multi-domain]  Cd Length: 190  Bit Score: 243.91  E-value: 4.89e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLlGKKKKRLRVDKWWGNRKELATVRTICSHVQNM 80
Cdd:PTZ00027   1 MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKL-SKDGKYIKVEMWFGTPSHLACIRTVCSHIKNM 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677     81 IKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAAL 160
Cdd:PTZ00027  80 MTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAAL 159
                        170       180       190
                 ....*....|....*....|....*....|.
gi 417677    161 IQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191
Cdd:PTZ00027 160 IHQSTLVRNKDIRKFLDGIYVSEKGTVDKDE 190
rpl6p PRK05518
50S ribosomal protein L6P; Reviewed
1-185 4.47e-63

50S ribosomal protein L6P; Reviewed


Pssm-ID: 235496 [Multi-domain]  Cd Length: 180  Bit Score: 192.75  E-value: 4.47e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKkkrLRVDKWWGNRKELATVRTICSHVQNM 80
Cdd:PRK05518   1 MVAAYIREEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISVEDGK---VVIETEFARKKTKAMVGTFASHIKNM 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677     81 IKGVTLGFRYKMRSVYAHFPINVVIQenGSLVEIRNFLGEKYIRRVRMRPGVACSVSqaqKDELILEGNDIELVSNSAAL 160
Cdd:PRK05518  78 IKGVTEGFEYKLKIVYSHFPMQVKVQ--GNEVVIENFLGEKSPRRAKILGGVKVKVK---GEDVIVEGIDKEDVGQTAAN 152
                        170       180
                 ....*....|....*....|....*
gi 417677    161 IQQATTVKNKDIRKFLDGIYVSEKG 185
Cdd:PRK05518 153 IEQATKIKGFDRRVFQDGIYIVEKE 177
uL6_arch TIGR03653
ribosomal protein uL6, archaeal form; Members of this protein family are the archaeal form ...
10-184 1.45e-59

ribosomal protein uL6, archaeal form; Members of this protein family are the archaeal form ofribosomal protein uL6 (previously L9 in yeast and human). The top-scoring proteins not selected by this model are eukaryotic cytosolic uL6. Bacterial ribosomal protein L6 scores lower and is described by a distinct model. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274702 [Multi-domain]  Cd Length: 170  Bit Score: 183.64  E-value: 1.45e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      10 VDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKkkrLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFR 89
Cdd:TIGR03653   4 IEIPEGVSVTIEGNIVTVKGPKGEVTREFWYPGIEISVEDGK---VVIETDFARKKDKAMVGTFRSHIKNMIKGVTEGFE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      90 YKMRSVYAHFPINVVIQenGSLVEIRNFLGEKYIRRVRMRPGVACSVSQaqkDELILEGNDIELVSNSAALIQQATTVKN 169
Cdd:TIGR03653  81 YKMKVVYSHFPMQVKVE--GNKVIIENFLGEKAPRRAKILGGVKVKVKG---EEVIVEGIDKEDVGQTAANIEQATRIKG 155
                         170
                  ....*....|....*
gi 417677     170 KDIRKFLDGIYVSEK 184
Cdd:TIGR03653 156 RDPRVFQDGIYIVEK 170
PTZ00179 PTZ00179
60S ribosomal protein L9; Provisional
4-191 4.95e-58

60S ribosomal protein L9; Provisional


Pssm-ID: 140206 [Multi-domain]  Cd Length: 189  Bit Score: 180.51  E-value: 4.95e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      4 ILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLlGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKG 83
Cdd:PTZ00179   3 IKSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRV-NKKNRTFTAVRWFGSKIPNSTINTALSHVRNMITG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677     84 VTLGFRYKMRSVYAHFPINVVIQenGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQ--KDELILEGNDIELVSNSAALI 161
Cdd:PTZ00179  82 VTKGFRFKVRFAYAHFPISVSVE--NQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSkvKDELVLEGNDLEQVSREAAVM 159
                        170       180       190
                 ....*....|....*....|....*....|
gi 417677    162 QQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191
Cdd:PTZ00179 160 HQLCLVKKKDIRKFLDGIYVQTKTNVEAEE 189
Ribosomal_L6 pfam00347
Ribosomal protein L6;
99-178 1.61e-16

Ribosomal protein L6;


Pssm-ID: 425625  Cd Length: 78  Bit Score: 70.74  E-value: 1.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      99 FPINVVIQENGslVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDG 178
Cdd:pfam00347   1 IPVGVRVSLKG--VNLVLVKGPKGELTREIPPGVTVEVEGNKVTVIVVSGIDKEKVGQFAALIGTVRALIPNMGKGVTEG 78
RplF COG0097
Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
10-92 2.16e-11

Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L6P/L9E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439867 [Multi-domain]  Cd Length: 177  Bit Score: 59.64  E-value: 2.16e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677    10 VDIPENVDITLKGRTVIVKGPRGTLRRDFNHiNVELSLLGKK--------KKRLRvdKWWGnrkelaTVRticSHVQNMI 81
Cdd:COG0097   8 IPIPAGVEVTIDGNTVTVKGPKGELSRTLHP-DVKVKVEDNKltvtrpsdSKEAR--ALHG------TTR---ALINNMV 75
                        90
                ....*....|.
gi 417677    82 KGVTLGFRYKM 92
Cdd:COG0097  76 EGVTEGFEKKL 86
Ribosomal_L6 pfam00347
Ribosomal protein L6;
12-87 2.11e-10

Ribosomal protein L6;


Pssm-ID: 425625  Cd Length: 78  Bit Score: 54.56  E-value: 2.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677      12 IPENVDITLKGRTVI-VKGPRGTLRRDFNHiNVELSLLGKKKKRLRVDkwwGNRKEL-----ATVRTICSHVQNMIKGVT 85
Cdd:pfam00347   1 IPVGVRVSLKGVNLVlVKGPKGELTREIPP-GVTVEVEGNKVTVIVVS---GIDKEKvgqfaALIGTVRALIPNMGKGVT 76

                  ..
gi 417677      86 LG 87
Cdd:pfam00347  77 EG 78
rpl6 CHL00140
ribosomal protein L6; Validated
10-93 8.59e-08

ribosomal protein L6; Validated


Pssm-ID: 177062 [Multi-domain]  Cd Length: 178  Bit Score: 49.91  E-value: 8.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417677     10 VDIPENVDITLKGRTVIVKGPRGTLRRDF----------NHINVELSLLGKKKKRLRvdkwwgnrkelATVRTIcshVQN 79
Cdd:CHL00140   9 IKIPDNVNVSIDDQIIKVKGPKGTLSRKIpdlitieiqdNSLFVSKKDESKKARALH-----------GLYRTL---INN 74
                         90
                 ....*....|....
gi 417677     80 MIKGVTLGFRYKMR 93
Cdd:CHL00140  75 MVIGVSEGFEKKLE 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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