|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12323 super family |
cl46901 |
DNA polymerase III subunit gamma/tau; |
330-531 |
1.82e-05 |
|
DNA polymerase III subunit gamma/tau;
The actual alignment was detected with superfamily member PRK12323:
Pssm-ID: 481241 [Multi-domain] Cd Length: 700 Bit Score: 48.33 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 330 SPPIASDGPPIEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGDGSSTQPEAMDAKPAPAAQAVSTGS 409
Cdd:PRK12323 390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 410 DAGAPTDSAMlTDSQSDAGEDGTAPGTPSDLQSDPEELEEAPAVRADPdggaapvapaTPAESESEGSRDPAAEPASEAV 489
Cdd:PRK12323 470 RPVAAAAAAA-PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA----------APAGWVAESIPDPATADPDDAF 538
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 41351777 490 PATTAESASGAAPVTQVEPAAAAVSATLAEPAARAAPITPKE 531
Cdd:PRK12323 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| UDM1_RNF168_RNF169-like |
cd22249 |
UDM1 (ubiquitin-dependent DSB recruitment module 1) found in RING finger proteins RNF168, ... |
730-772 |
4.78e-04 |
|
UDM1 (ubiquitin-dependent DSB recruitment module 1) found in RING finger proteins RNF168, RNF169 and similar proteins; This model represents the UDM1 (ubiquitin-dependent double-strand break [DSB] recruitment module 1) found in RING finger proteins, RNF168 and RNF169. RNF168 is an E3 ubiquitin-protein ligase that promotes non-canonical K27 ubiquitination to signal DNA damage. It functions, together with RNF8, as a DNA damage response (DDR) factor that promotes a series of ubiquitylation events on substrates such as H2A and H2AX. With H2AK13/15 ubiquitylation, it facilitates recruitment of repair factors p53-binding protein 1 (53BP1) or the RAP80-BRCA1 complex to sites of double-strand breaks (DSBs), and inhibits homologous recombination (HR) in cells deficient in the tumor suppressor BRCA1. RNF168 also promotes H2A neddylation, which antagonizes ubiquitylation of H2A and regulates DNA damage repair. In addition, RNF168 forms a functional complex with RAD6A or RAD6B during the DNA damage response. RNF169 is an uncharacterized E3 ubiquitin-protein ligase paralogous to RNF168. It functions as a negative regulator of the DNA damage signaling cascade. RNF169 recognizes polyubiquitin structures but does not itself contribute to double-strand break (DSB)-induced chromatin ubiquitylation. It contributes to the regulation of DSB repair pathway utilization via functionally competing with recruiting repair factors, 53BP1 and RAP80-BRCA1, for association with RNF168-modified chromatin, independent of its catalytic activity, limiting the magnitude of the RNF8/RNF168-dependent signaling response to DSBs. The UDM1 domain comprises LRM1 (LR motif 1), UMI (ubiquitin-interacting motif [UIM]- and MIU-related UBD) and MIU1 (motif interacting with ubiquitin 1). Mutations of Ub-interacting residues in UDM1 have little effect on the accumulation of RNF168 to DSB sites, suggesting that it may not be the main site of binding ubiquitylated and polyubiquitylated targets.
:
Pssm-ID: 409016 [Multi-domain] Cd Length: 66 Bit Score: 39.17 E-value: 4.78e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 41351777 730 PGKAKdpmEERRKQMRKEAIEMREQKRADKKRSKLIDKQLEEE 772
Cdd:cd22249 4 PGEIR---EEYEAQLKKLEEERRKEREEEEKASEELIRKLQEE 43
|
|
| PRK12323 super family |
cl46901 |
DNA polymerase III subunit gamma/tau; |
88-310 |
1.59e-03 |
|
DNA polymerase III subunit gamma/tau;
The actual alignment was detected with superfamily member PRK12323:
Pssm-ID: 481241 [Multi-domain] Cd Length: 700 Bit Score: 42.17 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 88 AFEEVRVGGDYSPPPEEAMPFETQQPslgdfwPTLEQPGPSGTPSGLQAFNPAILEPGTPTGASPGLGAYTPPPEEAMPF 167
Cdd:PRK12323 362 AFRPGQSGGGAGPATAAAAPVAQPAP------AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 168 EFNEPAQGDHSQP-------PLQVPDLAPGGPEAL-VPRALPAEPGNIRFENAGFREDYSPPPEESVP--FQVGGEEFGG 237
Cdd:PRK12323 436 ARQASARGPGGAPapapapaAAPAAAARPAAAGPRpVAAAAAAAPARAAPAAAPAPADDDPPPWEELPpeFASPAPAQPD 515
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41351777 238 DSPPPGLPRVIPQIGIG---GEFPTVAVPSALCLAPAENAPPLWVRGAIdRPFREAVRSPPNFACDSPPMEITRPL 310
Cdd:PRK12323 516 AAPAGWVAESIPDPATAdpdDAFETLAPAPAAAPAPRAAAATEPVVAPR-PPRASASGLPDMFDGDWPALAARLPV 590
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
330-531 |
1.82e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.33 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 330 SPPIASDGPPIEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGDGSSTQPEAMDAKPAPAAQAVSTGS 409
Cdd:PRK12323 390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 410 DAGAPTDSAMlTDSQSDAGEDGTAPGTPSDLQSDPEELEEAPAVRADPdggaapvapaTPAESESEGSRDPAAEPASEAV 489
Cdd:PRK12323 470 RPVAAAAAAA-PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA----------APAGWVAESIPDPATADPDDAF 538
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 41351777 490 PATTAESASGAAPVTQVEPAAAAVSATLAEPAARAAPITPKE 531
Cdd:PRK12323 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| UDM1_RNF168_RNF169-like |
cd22249 |
UDM1 (ubiquitin-dependent DSB recruitment module 1) found in RING finger proteins RNF168, ... |
730-772 |
4.78e-04 |
|
UDM1 (ubiquitin-dependent DSB recruitment module 1) found in RING finger proteins RNF168, RNF169 and similar proteins; This model represents the UDM1 (ubiquitin-dependent double-strand break [DSB] recruitment module 1) found in RING finger proteins, RNF168 and RNF169. RNF168 is an E3 ubiquitin-protein ligase that promotes non-canonical K27 ubiquitination to signal DNA damage. It functions, together with RNF8, as a DNA damage response (DDR) factor that promotes a series of ubiquitylation events on substrates such as H2A and H2AX. With H2AK13/15 ubiquitylation, it facilitates recruitment of repair factors p53-binding protein 1 (53BP1) or the RAP80-BRCA1 complex to sites of double-strand breaks (DSBs), and inhibits homologous recombination (HR) in cells deficient in the tumor suppressor BRCA1. RNF168 also promotes H2A neddylation, which antagonizes ubiquitylation of H2A and regulates DNA damage repair. In addition, RNF168 forms a functional complex with RAD6A or RAD6B during the DNA damage response. RNF169 is an uncharacterized E3 ubiquitin-protein ligase paralogous to RNF168. It functions as a negative regulator of the DNA damage signaling cascade. RNF169 recognizes polyubiquitin structures but does not itself contribute to double-strand break (DSB)-induced chromatin ubiquitylation. It contributes to the regulation of DSB repair pathway utilization via functionally competing with recruiting repair factors, 53BP1 and RAP80-BRCA1, for association with RNF168-modified chromatin, independent of its catalytic activity, limiting the magnitude of the RNF8/RNF168-dependent signaling response to DSBs. The UDM1 domain comprises LRM1 (LR motif 1), UMI (ubiquitin-interacting motif [UIM]- and MIU-related UBD) and MIU1 (motif interacting with ubiquitin 1). Mutations of Ub-interacting residues in UDM1 have little effect on the accumulation of RNF168 to DSB sites, suggesting that it may not be the main site of binding ubiquitylated and polyubiquitylated targets.
Pssm-ID: 409016 [Multi-domain] Cd Length: 66 Bit Score: 39.17 E-value: 4.78e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 41351777 730 PGKAKdpmEERRKQMRKEAIEMREQKRADKKRSKLIDKQLEEE 772
Cdd:cd22249 4 PGEIR---EEYEAQLKKLEEERRKEREEEEKASEELIRKLQEE 43
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
88-310 |
1.59e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.17 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 88 AFEEVRVGGDYSPPPEEAMPFETQQPslgdfwPTLEQPGPSGTPSGLQAFNPAILEPGTPTGASPGLGAYTPPPEEAMPF 167
Cdd:PRK12323 362 AFRPGQSGGGAGPATAAAAPVAQPAP------AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 168 EFNEPAQGDHSQP-------PLQVPDLAPGGPEAL-VPRALPAEPGNIRFENAGFREDYSPPPEESVP--FQVGGEEFGG 237
Cdd:PRK12323 436 ARQASARGPGGAPapapapaAAPAAAARPAAAGPRpVAAAAAAAPARAAPAAAPAPADDDPPPWEELPpeFASPAPAQPD 515
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41351777 238 DSPPPGLPRVIPQIGIG---GEFPTVAVPSALCLAPAENAPPLWVRGAIdRPFREAVRSPPNFACDSPPMEITRPL 310
Cdd:PRK12323 516 AAPAGWVAESIPDPATAdpdDAFETLAPAPAAAPAPRAAAATEPVVAPR-PPRASASGLPDMFDGDWPALAARLPV 590
|
|
| G_alpha |
smart00275 |
G protein alpha subunit; Subunit of G proteins that contains the guanine nucleotide binding ... |
759-786 |
4.04e-03 |
|
G protein alpha subunit; Subunit of G proteins that contains the guanine nucleotide binding site
Pssm-ID: 214595 [Multi-domain] Cd Length: 342 Bit Score: 40.25 E-value: 4.04e-03
10 20
....*....|....*....|....*...
gi 41351777 759 KKRSKLIDKQLEEEKMDYMCTHRLLLLG 786
Cdd:smart00275 1 IRRNKEIEKQLEEERKKKKREVKLLLLG 28
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
308-542 |
6.35e-03 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 39.83 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 308 RPLLEIGRASIGVDDDTAVNMDSPPIASDGPPIEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPErgdgs 387
Cdd:COG3266 149 LTLLIVLPLLEEQLLLLALQDIQGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAA----- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 388 stqPEAMDAKPAPAAQAVSTGSDAGAPTDSAMLTDSQSDAGEDGTAPGTPSDLQsdPEELEEAPAVRADPdggaapvapa 467
Cdd:COG3266 224 ---AELAALALLAAGAAEVLTARLVLLLLIIGSALKAPSQASSASAPATTSLGE--QQEVSLPPAVAAQP---------- 288
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41351777 468 tpaesesegSRDPAAEPASEAVPATTAESASGAAPVTQVEPAAAAVSATLAEPAARAAPiTPKEPTTRAVPSARA 542
Cdd:COG3266 289 ---------AAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAP-APEAAAAAAAPAAPA 353
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
330-531 |
1.82e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.33 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 330 SPPIASDGPPIEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGDGSSTQPEAMDAKPAPAAQAVSTGS 409
Cdd:PRK12323 390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 410 DAGAPTDSAMlTDSQSDAGEDGTAPGTPSDLQSDPEELEEAPAVRADPdggaapvapaTPAESESEGSRDPAAEPASEAV 489
Cdd:PRK12323 470 RPVAAAAAAA-PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA----------APAGWVAESIPDPATADPDDAF 538
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 41351777 490 PATTAESASGAAPVTQVEPAAAAVSATLAEPAARAAPITPKE 531
Cdd:PRK12323 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
380-542 |
3.31e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.46 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 380 SPERGDGSSTQPEAMDA---KPAPAAQAVSTGSDAGAPTDSAMLTDSQSDAGEDGTAPGTPSDLQSDPEELEEAPAVRAD 456
Cdd:PRK07003 366 GAPGGGVPARVAGAVPApgaRAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADG 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 457 PDGGAAPVAPATPAES-ESEGSRDPAAEPASEAVPATTAESASGAAPVTQVEPAAAAVSATLAEPAARAAPITPKEPTTR 535
Cdd:PRK07003 446 DAPVPAKANARASADSrCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525
|
....*..
gi 41351777 536 AVPSARA 542
Cdd:PRK07003 526 APPAPEA 532
|
|
| UDM1_RNF168_RNF169-like |
cd22249 |
UDM1 (ubiquitin-dependent DSB recruitment module 1) found in RING finger proteins RNF168, ... |
730-772 |
4.78e-04 |
|
UDM1 (ubiquitin-dependent DSB recruitment module 1) found in RING finger proteins RNF168, RNF169 and similar proteins; This model represents the UDM1 (ubiquitin-dependent double-strand break [DSB] recruitment module 1) found in RING finger proteins, RNF168 and RNF169. RNF168 is an E3 ubiquitin-protein ligase that promotes non-canonical K27 ubiquitination to signal DNA damage. It functions, together with RNF8, as a DNA damage response (DDR) factor that promotes a series of ubiquitylation events on substrates such as H2A and H2AX. With H2AK13/15 ubiquitylation, it facilitates recruitment of repair factors p53-binding protein 1 (53BP1) or the RAP80-BRCA1 complex to sites of double-strand breaks (DSBs), and inhibits homologous recombination (HR) in cells deficient in the tumor suppressor BRCA1. RNF168 also promotes H2A neddylation, which antagonizes ubiquitylation of H2A and regulates DNA damage repair. In addition, RNF168 forms a functional complex with RAD6A or RAD6B during the DNA damage response. RNF169 is an uncharacterized E3 ubiquitin-protein ligase paralogous to RNF168. It functions as a negative regulator of the DNA damage signaling cascade. RNF169 recognizes polyubiquitin structures but does not itself contribute to double-strand break (DSB)-induced chromatin ubiquitylation. It contributes to the regulation of DSB repair pathway utilization via functionally competing with recruiting repair factors, 53BP1 and RAP80-BRCA1, for association with RNF168-modified chromatin, independent of its catalytic activity, limiting the magnitude of the RNF8/RNF168-dependent signaling response to DSBs. The UDM1 domain comprises LRM1 (LR motif 1), UMI (ubiquitin-interacting motif [UIM]- and MIU-related UBD) and MIU1 (motif interacting with ubiquitin 1). Mutations of Ub-interacting residues in UDM1 have little effect on the accumulation of RNF168 to DSB sites, suggesting that it may not be the main site of binding ubiquitylated and polyubiquitylated targets.
Pssm-ID: 409016 [Multi-domain] Cd Length: 66 Bit Score: 39.17 E-value: 4.78e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 41351777 730 PGKAKdpmEERRKQMRKEAIEMREQKRADKKRSKLIDKQLEEE 772
Cdd:cd22249 4 PGEIR---EEYEAQLKKLEEERRKEREEEEKASEELIRKLQEE 43
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
361-542 |
5.06e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.68 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 361 AAEMEGSPTTATAVEGKVPSPERGDGSSTQPEAMDAKPAPAAQAVSTGSDAGAPTDSAMLTDSQSDAGEDGTAPGTPSDL 440
Cdd:PRK07003 369 GGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAP 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 441 QSDPEELEEAPAVRADPDGGAAPVAPATPAESESEGSRDPAAEPASEAVPATTAESASGAAPVTQVEPAAAAVSATLAEP 520
Cdd:PRK07003 449 VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528
|
170 180
....*....|....*....|..
gi 41351777 521 AARAAPITPKEpttrAVPSARA 542
Cdd:PRK07003 529 APEARPPTPAA----AAPAARA 546
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
88-310 |
1.59e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.17 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 88 AFEEVRVGGDYSPPPEEAMPFETQQPslgdfwPTLEQPGPSGTPSGLQAFNPAILEPGTPTGASPGLGAYTPPPEEAMPF 167
Cdd:PRK12323 362 AFRPGQSGGGAGPATAAAAPVAQPAP------AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 168 EFNEPAQGDHSQP-------PLQVPDLAPGGPEAL-VPRALPAEPGNIRFENAGFREDYSPPPEESVP--FQVGGEEFGG 237
Cdd:PRK12323 436 ARQASARGPGGAPapapapaAAPAAAARPAAAGPRpVAAAAAAAPARAAPAAAPAPADDDPPPWEELPpeFASPAPAQPD 515
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41351777 238 DSPPPGLPRVIPQIGIG---GEFPTVAVPSALCLAPAENAPPLWVRGAIdRPFREAVRSPPNFACDSPPMEITRPL 310
Cdd:PRK12323 516 AAPAGWVAESIPDPATAdpdDAFETLAPAPAAAPAPRAAAATEPVVAPR-PPRASASGLPDMFDGDWPALAARLPV 590
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
312-508 |
1.80e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.90 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 312 EIGRASIGVDDDTAVNMDSPPIASDGPPIEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGDGSSTQP 391
Cdd:PRK07764 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGG 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 392 EAMDAKPAPAAQAVSTGSDA-GAPTDSAMLTDSQSDAGEDGTAPGTPSdlQSDPEELEEAPAVRADPDGGAAPVAPATPA 470
Cdd:PRK07764 667 DGWPAKAGGAAPAAPPPAPApAAPAAPAGAAPAQPAPAPAATPPAGQA--DDPAAQPPQAAQGASAPSPAADDPVPLPPE 744
|
170 180 190
....*....|....*....|....*....|....*...
gi 41351777 471 ESESEGSRDPAAEPASEAVPATTAESASGAAPVTQVEP 508
Cdd:PRK07764 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
330-626 |
2.49e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 330 SPPIASDGPPIEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGDGSSTQPEAmDAKPAPAAQAVSTGS 409
Cdd:PRK07764 397 AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA-APSAQPAPAPAAAPE 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 410 DAGAPTDSAMLTDSQSDAGEDGTAPGTPSDlQSDPEELEEA-PAVRADPDGGAAPVAPATPAESESEGSRDPA------- 481
Cdd:PRK07764 476 PTAAPAPAPPAAPAPAAAPAAPAAPAAPAG-ADDAATLRERwPEILAAVPKRSRKTWAILLPEATVLGVRGDTlvlgfst 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 482 -------AEPASE---------------AVPATTAESASGAAPVTQVEPAAAAVSATLAEPAARAAPITPKEPTTRAVPS 539
Cdd:PRK07764 555 gglarrfASPGNAevlvtalaeelggdwQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAA 634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 540 ARAHPAAGAVPGAPAMSASARAAAARAAYAGPLVWGARSLSATPAARASLPARAAAAARAASAARAVAAGRSASAAPSRA 619
Cdd:PRK07764 635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714
|
....*..
gi 41351777 620 HLRPPSP 626
Cdd:PRK07764 715 DDPAAQP 721
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
152-654 |
3.02e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 152 PGLGAYTPPPEEAMPFEFNePAQGDHSQPPlQVPDlAPGGPEALVPRALPAEPGNirfenagfredySPPPEESVPFQVG 231
Cdd:PHA03247 2475 PGAPVYRRPAEARFPFAAG-AAPDPGGGGP-PDPD-APPAPSRLAPAILPDEPVG------------EPVHPRMLTWIRG 2539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 232 GEEFGGDS---PPPGLPrvipqigiggefptvavPSALCLAPAENAPPlwvRGAIDRPFREAVRSPPNFAcDSPPmEITR 308
Cdd:PHA03247 2540 LEELASDDagdPPPPLP-----------------PAAPPAAPDRSVPP---PRPAPRPSEPAVTSRARRP-DAPP-QSAR 2597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 309 PlleigRASIGVDDDTAVNMDSPPIASDGPPIEvSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGD--G 386
Cdd:PHA03247 2598 P-----RAPVDDRGDPRGPAPPSPLPPDTHAPD-PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARrlG 2671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 387 SSTQPEAMDAKPAPAA--QAVSTGSDAGAPTDSAMLTDSQSDAGEDGT-APGTPSDLQSDPEELEEAPAVRADPDGG--- 460
Cdd:PHA03247 2672 RAAQASSPPQRPRRRAarPTVGSLTSLADPPPPPPTPEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVPAGPatp 2751
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 461 AAPVAPATPAESESEGSRDPAAEPASEAVPATTAESASGAAPVTQVEPAAAavsatlaEPAARAAPITPKEPTTRAVPSA 540
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW-------DPADPPAAVLAPAAALPPAASP 2824
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 541 RAHPAAGAVPGAPAMSASARAAAARAAYAGPLVWGAR-SLSATPAARASLPARAAAAARAASAARAVAAGRSASAAPSRA 619
Cdd:PHA03247 2825 AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQ 2904
|
490 500 510
....*....|....*....|....*....|....*
gi 41351777 620 HLRPPSPEIQVADPPTPRPPPRPTAWPDKYERGRS 654
Cdd:PHA03247 2905 PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
100-458 |
4.04e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 100 PPPEEAMPFETQQPSLGDFWPTLEQPGPSGTPSGLQAFNPAILEPGTPTGASPGLGAYTPPPeeampfefnePAQGDHSQ 179
Cdd:PRK07764 435 PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAA----------PAAPAAPA 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 180 PPLQVPDLAPGGPE--------------ALVPRALPAEP-GN---IRFENAGFREDYSPPPEESVPFQVGGEEFGGD--- 238
Cdd:PRK07764 505 GADDAATLRERWPEilaavpkrsrktwaILLPEATVLGVrGDtlvLGFSTGGLARRFASPGNAEVLVTALAEELGGDwqv 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 239 ------SPPPGLPRVIPQIGIGGEFPTVAVPSAlclAPAENAPPLWVRGAIDRPFREAvrsPPNFACDSPPMEITRPLLE 312
Cdd:PRK07764 585 eavvgpAPGAAGGEGPPAPASSGPPEEAARPAA---PAAPAAPAAPAPAGAAAAPAEA---SAAPAPGVAAPEHHPKHVA 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 313 IGRASIGVDDDTAVNMDSPPIASDGPPIEV-----SGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGDGS 387
Cdd:PRK07764 659 VPDASDGGDGWPAKAGGAAPAAPPPAPAPAapaapAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDP 738
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 41351777 388 STQPEAMDAKPAPAAQAVSTGSDAGAPtdsamltdsqsdAGEDGTAPGTPSDLQSDPEELEEAPAVRADPD 458
Cdd:PRK07764 739 VPLPPEPDDPPDPAGAPAQPPPPPAPA------------PAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
|
|
| G_alpha |
smart00275 |
G protein alpha subunit; Subunit of G proteins that contains the guanine nucleotide binding ... |
759-786 |
4.04e-03 |
|
G protein alpha subunit; Subunit of G proteins that contains the guanine nucleotide binding site
Pssm-ID: 214595 [Multi-domain] Cd Length: 342 Bit Score: 40.25 E-value: 4.04e-03
10 20
....*....|....*....|....*...
gi 41351777 759 KKRSKLIDKQLEEEKMDYMCTHRLLLLG 786
Cdd:smart00275 1 IRRNKEIEKQLEEERKKKKREVKLLLLG 28
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
337-524 |
4.08e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.99 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 337 GPPIEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGDGSSTQPEAMDAKPAPAAQAVSTGSDAGAPTD 416
Cdd:PRK07003 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 417 SAMLTDSQSDAGEDGTAPGTPSDlqsdpEELEEAPAVRADPDggaapvaPATPAESESEGSRDPAAEPASEAVPATTAES 496
Cdd:PRK07003 451 AKANARASADSRCDERDAQPPAD-----SGSASAPASDAPPD-------AAFEPAPRAAAPSAATPAAVPDARAPAAASR 518
|
170 180
....*....|....*....|....*...
gi 41351777 497 ASGAAPVTQVEPAAAAVSATLAEPAARA 524
Cdd:PRK07003 519 EDAPAAAAPPAPEARPPTPAAAAPAARA 546
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
17-496 |
5.79e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 17 DIPPEvgEQPEQEPLEAPGAAAPGAGAGPAEEMATEPDSEPSNNEPVPDETGS--EISGPPEDSKSDIQSPCQAFEEVRV 94
Cdd:PHA03247 2590 DAPPQ--SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPhpPPTVPPPERPRDDPAPGRVSRPRRA 2667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 95 GGDYSPPPEEAMPFETQQPSLGDFW--------PTLEQPGPSGTPSGLQAFNPAILEPGTPTGASPGLGAY--TPPPEEA 164
Cdd:PHA03247 2668 RRLGRAAQASSPPQRPRRRAARPTVgsltsladPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAApaPPAVPAG 2747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 165 MPFEFNEPAQGDHSQPPLQVPDLAPGGPEALVPRALPAEPGNIRFENAGFREDYSPPPEESVPFQV-GGEEFGGDSPPPG 243
Cdd:PHA03247 2748 PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLApAAALPPAASPAGP 2827
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 244 LPRvipqigiggefPTVAVPSALCLAPAENAPPLWVRGAI-------DRPFREAVRSPPNFACDSPPMEITRPLLEIGRA 316
Cdd:PHA03247 2828 LPP-----------PTSAQPTAPPPPPGPPPPSLPLGGSVapggdvrRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 317 SIGVDDDTAVNMDSPPIASDGPPIEVSGAPDKSECAERPPVEREA-AEMEGSPTTATAVEGKVPSPERG---DGSSTQPE 392
Cdd:PHA03247 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPpLAPTTDPAGAGEPSGAVPQPWLGalvPGRVAVPR 2976
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 393 AMDAKPAPA--AQAVSTGSDAGAPTD------SAMLTDSQSDAG-----------EDGTAPGTPSDLQSDPEELEEAPAV 453
Cdd:PHA03247 2977 FRVPQPAPSreAPASSTPPLTGHSLSrvsswaSSLALHEETDPPpvslkqtlwppDDTEDSDADSLFDSDSERSDLEALD 3056
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 41351777 454 RADPDGGAAPVAPATPAESESEGSRDPAAEPASEAVPATTAES 496
Cdd:PHA03247 3057 PLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPPLSANAALS 3099
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
341-532 |
5.99e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 39.96 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 341 EVSGAPDKSECAERPPVEREAAEmegSPTTATAVEGKVPSPErGDGSSTQPEAMdakpapAAQAVSTGSDAGAPTDSAML 420
Cdd:PRK13108 280 EAPGALRGSEYVVDEALEREPAE---LAAAAVASAASAVGPV-GPGEPNQPDDV------AEAVKAEVAEVTDEVAAESV 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 421 TDSQSDAGEDGTApgtpsdlqsdPEELEEAPAVRADPdgGAAPVAPATPAESESEGSRDPAAEPASEAvpattAESASGA 500
Cdd:PRK13108 350 VQVADRDGESTPA----------VEETSEADIEREQP--GDLAGQAPAAHQVDAEAASAAPEEPAALA-----SEAHDET 412
|
170 180 190
....*....|....*....|....*....|..
gi 41351777 501 APVTQVEPAAAAVSATLAEPAARAAPITPKEP 532
Cdd:PRK13108 413 EPEVPEKAAPIPDPAKPDELAVAGPGDDPAEP 444
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
308-542 |
6.35e-03 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 39.83 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 308 RPLLEIGRASIGVDDDTAVNMDSPPIASDGPPIEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPErgdgs 387
Cdd:COG3266 149 LTLLIVLPLLEEQLLLLALQDIQGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAA----- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 388 stqPEAMDAKPAPAAQAVSTGSDAGAPTDSAMLTDSQSDAGEDGTAPGTPSDLQsdPEELEEAPAVRADPdggaapvapa 467
Cdd:COG3266 224 ---AELAALALLAAGAAEVLTARLVLLLLIIGSALKAPSQASSASAPATTSLGE--QQEVSLPPAVAAQP---------- 288
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41351777 468 tpaesesegSRDPAAEPASEAVPATTAESASGAAPVTQVEPAAAAVSATLAEPAARAAPiTPKEPTTRAVPSARA 542
Cdd:COG3266 289 ---------AAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAP-APEAAAAAAAPAAPA 353
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
340-542 |
7.99e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.97 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 340 IEVSGAPDKSECAERPPVEREAAEMEGSPTTATAVEGKVPSPERGDGSSTQPEAMDAKPAPAAQAVSTGSDAGAPTDSAM 419
Cdd:PRK07764 584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAS 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 420 LTDSQSDAGEDGTAPGTPSDLQSDPEELEEAPAVRADPDGGAAPVAPATPAESESEGSRDPAAEPAS------EAVPATT 493
Cdd:PRK07764 664 DGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASApspaadDPVPLPP 743
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 41351777 494 AESASGAAPVTQVEPAAAAVSATLAEPAARAAPITPKEPTTRAVPSARA 542
Cdd:PRK07764 744 EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
98-646 |
8.54e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.92 E-value: 8.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 98 YSPPPEEAMPFETQQPSlgdfwptleQPGPSGTPSGLQAFNPAILEPGTPTGASPGlgAYTPPPEEAMPFEFNEPAQGDH 177
Cdd:PHA03247 2480 YRRPAEARFPFAAGAAP---------DPGGGGPPDPDAPPAPSRLAPAILPDEPVG--EPVHPRMLTWIRGLEELASDDA 2548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 178 SQP-PLQVPDLAPGGPEALVPRALPA-EPGNIRFENAGFREDysPPPEESVPFQVGGEEfgGDSPPPGLPRVIPqigigg 255
Cdd:PHA03247 2549 GDPpPPLPPAAPPAAPDRSVPPPRPApRPSEPAVTSRARRPD--APPQSARPRAPVDDR--GDPRGPAPPSPLP------ 2618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 256 efPTVAVPSALCLAPAENAPPLWVRGAIDRPFREAVRSPPNFACDSPPMEITRPlleiGRASigvdddtavNMDSPPIAS 335
Cdd:PHA03247 2619 --PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL----GRAA---------QASSPPQRP 2683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 336 DGPPIEVSGAPDKSeCAERPPVEREAaemEGSPTTATAVEGKVPSPERGDGSSTQPEAMDAKPAPAAQAVSTGSDAGAPT 415
Cdd:PHA03247 2684 RRRAARPTVGSLTS-LADPPPPPPTP---EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 416 DSAMLTDSQSdagedgTAPGTPSdlqsdpeeleEAPAVRADPDGGAAPVAPATPAESESEGSRDPAAEPASEAVPATTAE 495
Cdd:PHA03247 2760 PPTTAGPPAP------APPAAPA----------AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS 2823
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 496 SASGAAPVTQVEPAAAAVSATLAEPA------------------ARAAPITPKEPTTRAVPSARAHPAAGAVPGAPAMSA 557
Cdd:PHA03247 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSlplggsvapggdvrrrppSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 558 SARAAAARAAYAGPLVWGARSLSATPAARASLPARAAAAARAASAARAVAAGRSASAAPSRAHLRP----------PSPE 627
Cdd:PHA03247 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgrvavprfrvPQPA 2983
|
570
....*....|....*....
gi 41351777 628 IQVADPPTPRPPPRPTAWP 646
Cdd:PHA03247 2984 PSREAPASSTPPLTGHSLS 3002
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
295-663 |
9.75e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 39.77 E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 295 PNFACDSPPMEITRPLLEIGRASIGVDDDtAVNMDSPPIASDG--PPIEVSGAPDKSECAERPPVEREAAEMEGSPTTAT 372
Cdd:PHA03307 19 EFFPRPPATPGDAADDLLSGSQGQLVSDS-AELAAVTVVAGAAacDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 373 AVEGKVPSPERGDGSST-------QPEAMDAKPAPAAQAVSTGSDAGAPTDSAML---TDSQSDAGEDGTAPGTPSDLQS 442
Cdd:PHA03307 98 ASPAREGSPTPPGPSSPdpppptpPPASPPPSPAPDLSEMLRPVGSPGPPPAASPpaaGASPAAVASDAASSRQAALPLS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 443 DPEELEEAP-----AVRADPDGGAAPVAPATPAESESEGSRDPAAEPASEAVPATTAESASGAAPvtqvEPAAAAVSATL 517
Cdd:PHA03307 178 SPEETARAPssppaEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS----ESSGCGWGPEN 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41351777 518 AEPAARAAPITPKEPTTRAVPSARAHPAAGAVPGAPAMSASARAAAARAAYAGPLVWGARSLSATpAARASLPARAAAAA 597
Cdd:PHA03307 254 ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSS-SSSRESSSSSTSSS 332
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41351777 598 RAASAARAVAAGRSASAAPSRAHLRPPSPEIQVADPPTPRPPPRPTAWPDKYERGRSCCRYEASSG 663
Cdd:PHA03307 333 SESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRA 398
|
|
| |
