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Conserved domains on  [gi|41327259|gb|AAS00131|]
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cytochrome b (mitochondrion) [Varecia rubra]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 738.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    1 MTNTRKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   81 YLHANGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  161 VEWIWGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTV 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  241 TLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41327259  321 SQYLFWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 738.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    1 MTNTRKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   81 YLHANGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  161 VEWIWGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTV 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  241 TLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41327259  321 SQYLFWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-373 6.55e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 362.57  E-value: 6.55e-124
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   9 PLMKIMNNSLiDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGAS 88
Cdd:COG1290  19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  89 MFFLCLFIHIGRGLYYGSFT----LLetWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWI 164
Cdd:COG1290  98 LFFAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259 165 WGGFSVDKATLTRFFAFH-FILPFIIMALVMVHLLFLHETGSNNPLGI----PSNSDKIPFHPYYTIKDFLGLLLLILLT 239
Cdd:COG1290 176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259 240 VTLVLFSPDLltDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALFFSILILAIIPLLHTAKQQSMIF 317
Cdd:COG1290 256 ALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRY 333

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 41327259 318 RPLSQYLFWILIANLFILTWIGGQPVehPYTIIGQTASILYFSLILIIMPLVNLIE 373
Cdd:COG1290 334 RPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.71e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 285.80  E-value: 1.71e-96
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   9 PLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  89 MFFLCLFIHIGRGLYYGSF--TLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 41327259 167 GFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 6.07e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 261.16  E-value: 6.07e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    18 LIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGASMFFLCLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    98 IGRGLYYGSF--TLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 41327259   176 TRFFAFHFILPFIIMALVMVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-294 6.87e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.64  E-value: 6.87e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 41327259   258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 294
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLM 101
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 738.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    1 MTNTRKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   81 YLHANGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  161 VEWIWGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTV 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  241 TLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41327259  321 SQYLFWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKMLKW 379
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 669.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    1 MTNTRKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   81 YLHANGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  161 VEWIWGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTV 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  241 TLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPL 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41327259  321 SQYLFWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKMLKW 379
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 651.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    1 MTNTRKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   81 YLHANGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  161 VEWIWGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTV 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  241 TLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41327259  321 SQYLFWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKMLKW 379
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 634.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    1 MTNTRKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   81 YLHANGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  161 VEWIWGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTV 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  241 TLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPL 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41327259  321 SQYLFWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKMLKW 379
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 5-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 606.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    5 RKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHA 84
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   85 NGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWI 164
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  165 WGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVL 244
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  245 FSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPLSQYL 324
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 41327259  325 FWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPL 368
Cdd:MTH00191 322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 11-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 589.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   11 MKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   91 FLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWGGFSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  171 DKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVLFSPDLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  251 TDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPLSQYLFWILIA 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 41327259  331 NLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIM 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 581.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    1 MTNTRKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   81 YLHANGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  161 VEWIWGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTV 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  241 TLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPL 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 41327259  321 SQYLFWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIImPLVNLIENKML 377
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 5-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 578.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    5 RKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHA 84
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   85 NGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWI 164
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  165 WGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVL 244
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  245 FSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPLSQYL 324
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 41327259  325 FWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKML 377
Cdd:MTH00034 325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 5-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 548.12  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    5 RKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHA 84
Cdd:MTH00016   6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   85 NGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWI 164
Cdd:MTH00016  86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  165 WGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVL 244
Cdd:MTH00016 166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  245 FSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPLSQYL 324
Cdd:MTH00016 246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQIL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 41327259  325 FWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSlILIIMPLVNLIENKMLK 378
Cdd:MTH00016 326 FWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 5-378 5.43e-179

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 501.92  E-value: 5.43e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    5 RKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHA 84
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   85 NGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWI 164
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  165 WGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVL 244
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  245 FSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPLSQYL 324
Cdd:MTH00022 244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 41327259  325 FWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKMLK 378
Cdd:MTH00022 324 FWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-378 4.20e-176

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 495.00  E-value: 4.20e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    1 MTNT-RKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWII 79
Cdd:MTH00053   1 MTKTiRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   80 RYLHANGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGIN 159
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  160 LVEWIWGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLT 239
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  240 VTLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRP 319
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 41327259  320 LSQYLFWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVNLIENKMLK 378
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 5-378 8.00e-174

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 489.05  E-value: 8.00e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    5 RKNHPLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHA 84
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   85 NGASMFFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWI 164
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  165 WGGFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVL 244
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  245 FSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPLSQYL 324
Cdd:MTH00224 246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 41327259  325 FWILIANLFILTWIGGQPVEHPYTIIGQTASILYFSLiLIIMPLVNLIENKMLK 378
Cdd:MTH00224 326 FWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSY-FIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 16-374 8.59e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 387.76  E-value: 8.59e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   16 NSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGASMFFLCLF 95
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   96 IHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWGGFSVDKATL 175
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  176 TRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVLFS--PDLLTDP 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  254 DNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPLSQYLFWILIANLF 333
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 41327259  334 ILTWIGGQPV-EHPYTIIGQTASILYFSLILIIMPLVNLIEN 374
Cdd:MTH00033 333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-373 6.55e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 362.57  E-value: 6.55e-124
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   9 PLMKIMNNSLiDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGAS 88
Cdd:COG1290  19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  89 MFFLCLFIHIGRGLYYGSFT----LLetWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWI 164
Cdd:COG1290  98 LFFAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259 165 WGGFSVDKATLTRFFAFH-FILPFIIMALVMVHLLFLHETGSNNPLGI----PSNSDKIPFHPYYTIKDFLGLLLLILLT 239
Cdd:COG1290 176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVF 255

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259 240 VTLVLFSPDLltDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALFFSILILAIIPLLHTAKQQSMIF 317
Cdd:COG1290 256 ALLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRY 333

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 41327259 318 RPLSQYLFWILIANLFILTWIGGQPVehPYTIIGQTASILYFSLILIIMPLVNLIE 373
Cdd:COG1290 334 RPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 12-370 4.05e-118

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 346.54  E-value: 4.05e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   12 KIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   92 LCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWGGFSVD 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  172 KATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFlGLLLLILLTVTLVLFSPDLLT 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA-YNIIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  252 DPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLhtaKQQSMIFRPLSQYLFWILIAN 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 41327259  332 LFILTWIGGQPVEHPYTIIGQTASILYFSLILIIMPLVN 370
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 1.71e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 285.80  E-value: 1.71e-96
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   9 PLMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  89 MFFLCLFIHIGRGLYYGSF--TLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 41327259 167 GFSVDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 10-364 3.92e-95

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 288.03  E-value: 3.92e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   10 LMKIMNNSLIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   90 FFLCLFIHIGRGLYYGSFTLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWGGFS 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  170 VDKATLTRFFAFHFILPFIIMALVMVHLLFLHETGSNNPLGIPSN-SDKIPFHPYYTIKDFLGLLLLILLTVTLVLFSPD 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  249 LLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG-VLALFFSILILAiipllhTAKQQSMIFRPLSQYLFWI 327
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGlVLVLSFLFFLWV------PTFNGSSVYSVWRQVNFWL 314

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 41327259  328 LIANLFILTWIGGQPVEHPYTIIGQTASILYFSLILI 364
Cdd:MTH00046 315 IVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 6.07e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 261.16  E-value: 6.07e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    18 LIDLPAPSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGASMFFLCLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    98 IGRGLYYGSF--TLLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 41327259   176 TRFFAFHFILPFIIMALVMVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 1.30e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 150.87  E-value: 1.30e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259 207 NPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVLFSPDLLTDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 41327259 287 KLGGVLALFFSILILAIIPLLHTAKQQSMiFRPLSQYLFWILIANLFILTWIGGQPVEHPYTIIGQTA 354
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 4.45e-40

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 137.22  E-value: 4.45e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALFFSILILAIIPLLHTAKQQSMIFRPLSQYLFWILIANLFILTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 41327259   338 IGGQPVEHPYTIIGQTASILY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 1.02e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 138.91  E-value: 1.02e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259    88 SMFFLCLFIHIGRGLYYGSFTLLE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   166 GGFSVDKATLTRFFAFHF-ILPFIIMALVMVHLLFLHETGSNNPLGIPSNSDKIPFHPYYTIKDFLGLLLLILLTVTLVL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 41327259   245 FSPDLLTDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 33-209 2.41e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 137.15  E-value: 2.41e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   33 FGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLYYGSFTLLE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  112 -TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWGGFSVDKATLTRFFAFH-FILPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 41327259  190 MALVMVHLLFLHETGSNNPL 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 24-209 1.63e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 126.76  E-value: 1.63e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259   24 PSNISSWWNFGSLLGACLTLQVITGLFLAMHYTADTTTAFSSITHICRDVNYGWIIRYLHANGASMFFLCLFIHIGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41327259  104 YGSFTLLE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGINLVEWIWGGFSVDKATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 41327259  182 H-FILPFIIMALVMVHLLFLHETGSNNPL 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 258-294 2.79e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 52.70  E-value: 2.79e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 41327259  258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 294
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLM 101
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 258-294 4.33e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.10  E-value: 4.33e-08
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 41327259 258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 294
Cdd:COG5679  66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMM 102
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-294 6.87e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.64  E-value: 6.87e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 41327259   258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 294
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLM 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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