NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|410697634|gb|AFV76702|]
View 

hypothetical protein Theos_1676 [Thermus oshimai JL-2]

Protein Classification

FmdB family zinc ribbon protein( domain architecture ID 10006375)

FmdB family zinc ribbon protein may act as a regulatory protein; similar to Methylophilus methylotrophus regulatory protein FmdB that may be a positive regulator of formamidase

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG2331 COG2331
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction ...
 1-74 1.99e-26

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


:

Pssm-ID: 441902  Cd Length: 77  Bit Score: 91.64  E-value: 1.99e-26
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 410697634  1 MPVYVYKGLETGNYYEFEQGFHDEPLKAHPETGEPLKRVITAPAIIFKGSGWHIKDYAKKSEGKSESGESGEKK 74
Cdd:COG2331   1 MPIYEYRCESCGHEFEVLQKMSDDPLTVCPECGGPLRRLISAPGFVFKGSGFYVTDSRSGSKKSSSSSSGSGSS 74
 
Name Accession Description Interval E-value
COG2331 COG2331
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction ...
 1-74 1.99e-26

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 441902  Cd Length: 77  Bit Score: 91.64  E-value: 1.99e-26
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 410697634  1 MPVYVYKGLETGNYYEFEQGFHDEPLKAHPETGEPLKRVITAPAIIFKGSGWHIKDYAKKSEGKSESGESGEKK 74
Cdd:COG2331   1 MPIYEYRCESCGHEFEVLQKMSDDPLTVCPECGGPLRRLISAPGFVFKGSGFYVTDSRSGSKKSSSSSSGSGSS 74
Zn-ribbon_8 pfam09723
Zinc ribbon domain; This entry represents a region of about 41 amino acids found in a number ...
 1-40 1.44e-07

Zinc ribbon domain; This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.


Pssm-ID: 462856  Cd Length: 41  Bit Score: 42.98  E-value: 1.44e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 410697634   1 MPVYVYKGLETGNYYEFEQGFHDEPLKAHPETG-EPLKRVI 40
Cdd:pfam09723  1 MPIYEYRCEECGHEFEVLQKISDPPLTTCPECGsGDVRRLI 41
CxxC_CXXC_SSSS smart00834
Putative regulatory protein; CxxC_CXXC_SSSS represents a region of about 41 amino acids found ...
 1-41 1.77e-06

Putative regulatory protein; CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.


Pssm-ID: 197903  Cd Length: 41  Bit Score: 40.23  E-value: 1.77e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 410697634    1 MPVYVYKGLETGNYYEFEQGFHDEPLKAHPETGEPLKRVIT 41
Cdd:smart00834  1 MPIYEYRCEDCGHTFEVLQKISDDPLTTCPECGGDVRRLIS 41
 
Name Accession Description Interval E-value
COG2331 COG2331
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction ...
 1-74 1.99e-26

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 441902  Cd Length: 77  Bit Score: 91.64  E-value: 1.99e-26
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 410697634  1 MPVYVYKGLETGNYYEFEQGFHDEPLKAHPETGEPLKRVITAPAIIFKGSGWHIKDYAKKSEGKSESGESGEKK 74
Cdd:COG2331   1 MPIYEYRCESCGHEFEVLQKMSDDPLTVCPECGGPLRRLISAPGFVFKGSGFYVTDSRSGSKKSSSSSSGSGSS 74
Zn-ribbon_8 pfam09723
Zinc ribbon domain; This entry represents a region of about 41 amino acids found in a number ...
 1-40 1.44e-07

Zinc ribbon domain; This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.


Pssm-ID: 462856  Cd Length: 41  Bit Score: 42.98  E-value: 1.44e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 410697634   1 MPVYVYKGLETGNYYEFEQGFHDEPLKAHPETG-EPLKRVI 40
Cdd:pfam09723  1 MPIYEYRCEECGHEFEVLQKISDPPLTTCPECGsGDVRRLI 41
CxxC_CXXC_SSSS smart00834
Putative regulatory protein; CxxC_CXXC_SSSS represents a region of about 41 amino acids found ...
 1-41 1.77e-06

Putative regulatory protein; CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.


Pssm-ID: 197903  Cd Length: 41  Bit Score: 40.23  E-value: 1.77e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 410697634    1 MPVYVYKGLETGNYYEFEQGFHDEPLKAHPETGEPLKRVIT 41
Cdd:smart00834  1 MPIYEYRCEDCGHTFEVLQKISDDPLTTCPECGGDVRRLIS 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH