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Conserved domains on  [gi|40807111|gb|AAH65210|]
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C9orf80 protein [Homo sapiens]

Protein Classification

SOSSC domain-containing protein( domain architecture ID 11239855)

SOSSC domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SOSSC super family cl24483
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 18-101 1.19e-21

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


The actual alignment was detected with superfamily member pfam15925:

Pssm-ID: 464945  Cd Length: 101  Bit Score: 81.57  E-value: 1.19e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40807111    18 ILAELDKeKRKLLMQNQ-----SSTNHPGASIA---------LSRPSLNKDFRDHAEQQHIA----AQQKAALQHAHAHS 79
Cdd:pfam15925   1 ILEEIQK-KKQLLMQGQivlglSATNGPQLATPssvpqqprsLPGPTNVTGPPDLAGNTSVSsnhkASQRQALQHAHSTS 79

                          90       100
                  ....*....|....*....|..
gi 40807111    80 SGYFITQDSAFGNLILPVLPRL 101
Cdd:pfam15925  80 PGFFITQDSAFGNLILPVLPRF 101
 
Name Accession Description Interval E-value
SOSSC pfam15925
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 18-101 1.19e-21

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


Pssm-ID: 464945  Cd Length: 101  Bit Score: 81.57  E-value: 1.19e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40807111    18 ILAELDKeKRKLLMQNQ-----SSTNHPGASIA---------LSRPSLNKDFRDHAEQQHIA----AQQKAALQHAHAHS 79
Cdd:pfam15925   1 ILEEIQK-KKQLLMQGQivlglSATNGPQLATPssvpqqprsLPGPTNVTGPPDLAGNTSVSsnhkASQRQALQHAHSTS 79

                          90       100
                  ....*....|....*....|..
gi 40807111    80 SGYFITQDSAFGNLILPVLPRL 101
Cdd:pfam15925  80 PGFFITQDSAFGNLILPVLPRF 101
 
Name Accession Description Interval E-value
SOSSC pfam15925
SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a ...
 18-101 1.19e-21

SOSS complex subunit C; SOSS complex subunit C is a component of the SOSS complex, a single-stranded DNA binding complex involved in genomic stability, double-stranded break repair and ataxia telangiectasia-mutated-dependent signaling pathways.


Pssm-ID: 464945  Cd Length: 101  Bit Score: 81.57  E-value: 1.19e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40807111    18 ILAELDKeKRKLLMQNQ-----SSTNHPGASIA---------LSRPSLNKDFRDHAEQQHIA----AQQKAALQHAHAHS 79
Cdd:pfam15925   1 ILEEIQK-KKQLLMQGQivlglSATNGPQLATPssvpqqprsLPGPTNVTGPPDLAGNTSVSsnhkASQRQALQHAHSTS 79

                          90       100
                  ....*....|....*....|..
gi 40807111    80 SGYFITQDSAFGNLILPVLPRL 101
Cdd:pfam15925  80 PGFFITQDSAFGNLILPVLPRF 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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