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Conserved domains on  [gi|407259475|gb|AFT91364|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Tanygnathus megalorynchos]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-232 1.28e-100

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 296.35  E-value: 1.28e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATAISM 232
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAM 284
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-232 1.28e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 296.35  E-value: 1.28e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATAISM 232
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAM 284
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-216 6.37e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.91  E-value: 6.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475    1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCN-----------LLTTAIAIKLGLAPFHFWFPEVLQG 69
Cdd:pfam00361  32 SEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLILVGFLFKSAQVPFHTWLPDAYEG 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   70 SSLT-TALLLSTMMKLPPISILLLSSHSLNPT-----LLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIII- 142
Cdd:pfam00361 112 APTPvSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALg 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  143 ---IYNPKLTLLTFYIYTLMTASIFL--------TMNTTNTLKLPTLmtsWTKTPALSTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:pfam00361 192 agtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ....*
gi 407259475  212 WSIIQ 216
Cdd:pfam00361 269 FLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-165 4.11e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 76.69  E-value: 4.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLF-SSMTNAwSTGQWDITQ----LTYPPSCN--------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:COG1007  153 EAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGiaaaLAAGGANSpllllglvLVLAGLAFKLSAVPFHMWTPDVYE 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  69 GSSLTTALLLST---------MMKLppISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMT 139
Cdd:COG1007  232 GAPTPVTAFLATapkiaafaaLLRL--LVEAFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLL 309

                        170       180       190
                 ....*....|....*....|....*....|
gi 407259475 140 IIIIYNPKLTL--LTFY--IYTLMTASIFL 165
Cdd:COG1007  310 LGLAAGTPLGVsaALFYllAYLFMNLGAFA 339
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-223 8.87e-15

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 73.06  E-value: 8.87e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475    1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCN------------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYE 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   69 GSSLTTALLLST---------MMKLPPISILLLSSHSLNptLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMT 139
Cdd:TIGR01770 232 GAPTPVTAFFSIvpkiaifavFLRLFLYILFGFSEAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYIL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  140 IIIIYNPKLTL--LTFY--IYTLMTASIFLTMNTTNTLKLP-----TLMTSWTKT-PALSTTLMLTLLSLAGLPPLTGFL 209
Cdd:TIGR01770 310 IGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFF 389

                         250
                  ....*....|....
gi 407259475  210 PKWSIIQELTKQEM 223
Cdd:TIGR01770 390 GKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-232 1.28e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 296.35  E-value: 1.28e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00112  53 TEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00112 133 WQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATAISM 232
Cdd:MTH00112 213 TPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAM 284
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-232 6.91e-90

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 268.98  E-value: 6.91e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00135  53 VEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSlNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00135 133 WQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMT 211

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATAISM 232
Cdd:MTH00135 212 SSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAAL 283
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-232 1.40e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 257.93  E-value: 1.40e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00070  53 TEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00070 133 WQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATAISM 232
Cdd:MTH00070 213 SSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMAL 284
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-232 9.22e-77

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 235.51  E-value: 9.22e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00105  53 TEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLT 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00105 133 WQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATAISM 232
Cdd:MTH00105 213 LTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAI 284
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-232 4.90e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 202.89  E-value: 4.90e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00200  53 VEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILST 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00200 133 WQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIIT 212

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTTTATAISM 232
Cdd:MTH00200 213 LTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLL 284
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-215 5.32e-60

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 192.45  E-value: 5.32e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00041  53 VEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIAT 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00041 133 WQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIIN 212

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00041 213 TSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-225 1.52e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 136.49  E-value: 1.52e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLFSSMTNAWSTGqwditqLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLSTM 81
Cdd:MTH00160  55 ESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTW 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  82 MKLPPISILLLSShslNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMTA 161
Cdd:MTH00160 129 QKIAPLILLSYLI---NNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISL 205

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 407259475 162 SIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEMTT 225
Cdd:MTH00160 206 SIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFF 269
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-223 6.90e-33

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 121.53  E-value: 6.90e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITqltyppscNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00144  53 SESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNP-TLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLM 159
Cdd:MTH00144 125 WQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVS 204

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 407259475 160 TASIFLTMNTTNTlKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEM 223
Cdd:MTH00144 205 SGFLFFSLWSGDS-GSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-223 1.70e-32

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 120.65  E-value: 1.70e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSmtnawsTGQWDITQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00011  55 SEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILST 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00011 129 WQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIIT 208

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQELTKQEM 223
Cdd:MTH00011 209 TPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-218 1.32e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 115.54  E-value: 1.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTgqwditqLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLST 80
Cdd:MTH00197  47 NEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLAT 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  81 MMKLPPISILLLSSHslNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYTLMT 160
Cdd:MTH00197 120 WQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIM 197

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 407259475 161 ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:MTH00197 198 FMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 2-215 1.61e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 91.63  E-value: 1.61e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLFSSMTNAWSTGQWDI-------------TQLTYPPSCNLLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:MTH00196  44 EAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  69 GSSLTTALLLSTMMKLPPISILLLSSHSLNPTLLTALstLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIII----IY 144
Cdd:MTH00196 124 GAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGL--FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFE 201

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 407259475 145 NPKLTLLTFYIYTLMTASIFLTMNTTNTLK--LPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00196 202 SIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-216 6.37e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 88.91  E-value: 6.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475    1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCN-----------LLTTAIAIKLGLAPFHFWFPEVLQG 69
Cdd:pfam00361  32 SEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssgllllflLILVGFLFKSAQVPFHTWLPDAYEG 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   70 SSLT-TALLLSTMMKLPPISILLLSSHSLNPT-----LLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIII- 142
Cdd:pfam00361 112 APTPvSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALg 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  143 ---IYNPKLTLLTFYIYTLMTASIFL--------TMNTTNTLKLPTLmtsWTKTPALSTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:pfam00361 192 agtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL---AKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ....*
gi 407259475  212 WSIIQ 216
Cdd:pfam00361 269 FLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-215 2.15e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 86.22  E-value: 2.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCN----LLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALL 77
Cdd:MTH00199 148 EAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGDvgkiLITISLLFKLSAAPFHMWAPDVYEGAPTITTAL 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  78 LSTMMKLPPISILLLSSHSLNPTLLTAlsTLSIALGGWAGLNQTQTRKILAFSSISHMGW----MTIIIIYNPKLTLLTF 153
Cdd:MTH00199 228 LATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYM 305

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 407259475 154 YIYTLMTA---SIFLTMNTTNTLKLPTLMTSwTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00199 306 IIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-165 4.11e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 76.69  E-value: 4.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLF-SSMTNAwSTGQWDITQ----LTYPPSCN--------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:COG1007  153 EAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGiaaaLAAGGANSpllllglvLVLAGLAFKLSAVPFHMWTPDVYE 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  69 GSSLTTALLLST---------MMKLppISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMT 139
Cdd:COG1007  232 GAPTPVTAFLATapkiaafaaLLRL--LVEAFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLL 309

                        170       180       190
                 ....*....|....*....|....*....|
gi 407259475 140 IIIIYNPKLTL--LTFY--IYTLMTASIFL 165
Cdd:COG1007  310 LGLAAGTPLGVsaALFYllAYLFMNLGAFA 339
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-223 8.87e-15

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 73.06  E-value: 8.87e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475    1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCN------------LLTTAIAIKLGLAPFHFWFPEVLQ 68
Cdd:TIGR01770 152 TEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYE 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   69 GSSLTTALLLST---------MMKLPPISILLLSSHSLNptLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMT 139
Cdd:TIGR01770 232 GAPTPVTAFFSIvpkiaifavFLRLFLYILFGFSEAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYIL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  140 IIIIYNPKLTL--LTFY--IYTLMTASIFLTMNTTNTLKLP-----TLMTSWTKT-PALSTTLMLTLLSLAGLPPLTGFL 209
Cdd:TIGR01770 310 IGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDEwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFF 389

                         250
                  ....*....|....
gi 407259475  210 PKWSIIQELTKQEM 223
Cdd:TIGR01770 390 GKFYVFFALLKSGL 403
ndhB CHL00049
NADH dehydrogenase subunit 2
 2-211 2.01e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 68.88  E-value: 2.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLFS-SMTNAWSTGQWDI---------TQLTYPPSCNL----LTTAIAIKLGLAPFHFWFPEVL 67
Cdd:CHL00049 162 EATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVY 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  68 QGSSLTTALLLSTMMKLPPISILLLSSHSLNPT-------LLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTI 140
Cdd:CHL00049 242 EGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVII 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 141 III-------YNPKLTLLTFYIY-TLMT-ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:CHL00049 322 GIIvgdsndgYASMITYMLFYIFmNLGTfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
2-227 4.93e-13

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 67.92  E-value: 4.93e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQLTYPPSCN------------LLTTAIAIKLGLAPFHFWFPEVLQG 69
Cdd:PRK05777 154 EAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADGsgnsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEG 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  70 SSLTTALLLST---------MMKLppISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTI 140
Cdd:PRK05777 234 APTPVTAFLATapkiaafavLLRL--LVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLV 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 141 IIIYNPKLTL--LTFY--IYTLMTASIF--LTMNTTNTLKLPTLmTSWT----KTPALSTTLMLTLLSLAGLPPLTGFLP 210
Cdd:PRK05777 312 GLAAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGEAESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWG 390

                        250
                 ....*....|....*..
gi 407259475 211 KWSIIQELTKQEMTTTA 227
Cdd:PRK05777 391 KFYVFEAAVEAGLWWLA 407
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-216 7.62e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 64.01  E-value: 7.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQL-----TYPPS-----CNLLTTAIAIKLGLAPFHFWFPEVL-QG 69
Cdd:COG0651  156 LRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaELDPGlllaaFALLLVGFGIKAALFPLHFWLPDAYpAA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  70 SSLTTALLLSTMMK-------------LPPISILLLSshslnpTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMG 136
Cdd:COG0651  236 PSPVSALLSGLLTKvgvyailrvltllFGADPALFLG------TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIG 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 137 WMTIII-IYNPK-LTLLTFYI--YTLMTASIFLT----MNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGF 208
Cdd:COG0651  310 YILLGLgLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGF 389


                 ....*...
gi 407259475 209 LPKWSIIQ 216
Cdd:COG0651  390 VSKWLLLQ 397
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 45-215 2.87e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 59.87  E-value: 2.87e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  45 LLTTAIAIKLGLAPFHFWFPEVLQGSSLTTALLLSTMMKLppISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTR 124
Cdd:MTH00198 304 FITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIK 381

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 125 KILAFSSISHMGWMTIII-------IYNPKLTLLTFYIYTLMTASIFLTMNTTNTL------------------KLPTLM 179
Cdd:MTH00198 382 RLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGTRtptsrqrdgsfgnynlvrRLVDLT 461

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 407259475 180 TSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:MTH00198 462 ILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-140 3.42e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 56.24  E-value: 3.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMTNAWSTGQW-----DITQLTYPPSCN-----LLTTAIAIKLGLAPFHFWFPEVL-QG 69
Cdd:COG1008  160 IYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAQlllflAFFIAFAVKVPMFPFHTWLPDAHvEA 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  70 SSLTTALLLSTMMK----------LP--PISILLLSshslnpTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGW 137
Cdd:COG1008  240 PTAGSVLLAGVLLKmggygllrfaLPlfPEASAYFA------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                 ...
gi 407259475 138 MTI 140
Cdd:COG1008  314 VLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
2-211 3.67e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.52  E-value: 3.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLF-SSMTNAWSTGQWDIT----QLTYPPSCNLLTT------AIAIKLGLAPFHFWFPEVLQGS 70
Cdd:PRK02504 161 EAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDVYEGS 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  71 SLTTALLLSTMMKLPPISILLLSSHSLNP-------TLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIII 143
Cdd:PRK02504 241 PTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLV 320

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 407259475 144 YNPK--LTLLTFY--IYTLMT----ASIFLTMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:PRK02504 321 AGTEagYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-142 7.02e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 7.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475    1 IEATTKYFLVQAAASALVLFS----SMTNAWSTGQWDITQLTYPPSCNLLT-----TAIAIKLGLAPFHFWFPEV-LQGS 70
Cdd:TIGR01972 155 IYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhVEAP 234

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 407259475   71 SLTTALLLSTMMKLPP------ISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIII 142
Cdd:TIGR01972 235 TAGSVILAGVLLKMGTygflrfNLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 312
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 28-211 9.95e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 9.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  28 STGQWDITQL-TYPPSCNLLTTAIAI-------KLGLAPFHFWFPEVLQGSSLTTALLLSTMM---------KLPPISIL 90
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPGFAD 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  91 LLSSHslnPTLLTaLSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPK------LTLLTfyIYTLMTASIF 164
Cdd:PRK12644 263 VPVWR---PTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLL--AHALFKAALF 336

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 407259475 165 LTM----NTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPK 211
Cdd:PRK12644 337 LVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 45-218 3.61e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.18  E-value: 3.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  45 LLTTAIAIKLGLAPFHFWFPEVLQG-SSLTTALLLSTMMKLP---------PISILLLSSHSLNPTLLTALSTLSIALGG 114
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyaliriyfTVFGGDFRFALGLGWLLAVLALLSMLVGS 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 115 WAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLL--TFYI--YTLMTASIFLT----MNTTNTLKLPTLMTSWTKTP 186
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMP 366

                        170       180       190
                 ....*....|....*....|....*....|..
gi 407259475 187 ALSTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-214 5.31e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.01  E-value: 5.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSmtnAWSTGQWDITQLTY--------PPSCN-----LLTTAIAIKLGLAPFHFWFPEVL 67
Cdd:PRK08376 171 IEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYlavkmsenPTVVAkialaLFIAGLAMKSGAVPVHMWLPDAY 247

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  68 QG--SSLTTALLLST------MMKLPPISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWM- 138
Cdd:PRK08376 248 PAapSSISAMLLVIKqaglyaLARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMl 327

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 139 -----TIIIIYNPKLTLL--------TFYI--YTLMTASIFLT----MNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSL 199
Cdd:PRK08376 328 lglgvGLAALGDPAMASYgeialaggIYHIvnHALYKALLFLTagavIYETGTRNLNELGGLARTMPKTTIAFLIGAAAI 407

                        250
                 ....*....|....*
gi 407259475 200 AGLPPLTGFLPKWSI 214
Cdd:PRK08376 408 VGLPPFNGFASKWLI 422
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 3-226 7.28e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.56  E-value: 7.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   3 ATTKYFLVQAAASALVLFSSMTNAWSTGQ--WDITQLT---YPPSCNLLT-----TAIAIKLGLAPFHFWFPE------- 65
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  66 ----VLQGSSLTT---ALLLSTMMKLPPISILLLsshslnpTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWM 138
Cdd:PRK12561 218 pvsmILAGVLLKMggyALIRFNVQMLPDAHVYFA-------PALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 139 TIIIIYNPKL----TLLTFYIYTLMTASIFL----TMNTTNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLP 210
Cdd:PRK12561 291 LLGIAAFTDLgisgAMLQMISHGLIAAALFFltgvTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370

                        250
                 ....*....|....*.
gi 407259475 211 KWSIIQELTKQEMTTT 226
Cdd:PRK12561 371 ELTVFLGITSSDVYSS 386
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-158 1.60e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.52  E-value: 1.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAA------SALVLFSSMTNAWSTGQWDITQLT-----YPPSCNLLT-----TAIAIKLGLAPFHFWFP 64
Cdd:PRK08676 151 IDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLP 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  65 EV-LQGSSLTTALLLSTMMKLP-------PISILLLSSHSLNPTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMG 136
Cdd:PRK08676 231 AAyAKAPSVVSALLSGTVLNIGiygilrlSALLRQSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMG 310

                        170       180
                 ....*....|....*....|..
gi 407259475 137 WMTIIIIYNPKLTLLTFYIYTL 158
Cdd:PRK08676 311 LMLLGIGIGTPLALFWMLFHML 332
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-142 2.72e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 2.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   1 IEATTKYFLVQAAASALVLFSSMT----NAWSTGQWDITQL-TYPPSCNLLT-------TAIAIKLGLAPFHFWFPEVLQ 68
Cdd:PRK05846 160 IYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLlNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPDAHV 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  69 -----GSSLTTALLLST--------MMKLPPISILLLSshslnpTLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHM 135
Cdd:PRK05846 240 qaptaGSVLLAGILLKMgaygllrfSLPLFPDASHEFA------PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHM 313


                 ....*..
gi 407259475 136 GWMTIII 142
Cdd:PRK05846 314 GFVTLGI 320
PRK12650 PRK12650
DUF4040 family protein;
46-215 1.32e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 42.72  E-value: 1.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  46 LTTAIAIKLGLA--------PFHFWFPEVLQGSSLTTALL-LSTMMKLPPISILLLSSHSLNPT----LLTALSTLSIAL 112
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLhAAAVVKAGIYLLLRFSPVFHDVAvwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 113 GGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIYT----LMTASIFLTM----NTTNTLKLPTLMTSWTK 184
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                        170       180       190
                 ....*....|....*....|....*....|.
gi 407259475 185 TPALSTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSKEGML 396
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-230 8.58e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 39.98  E-value: 8.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   2 EATTKYFLVQAAASALVLFSSMTNAWSTGQWDITQ----LTYPPSCN-------LLTTAIAIKLGLAPFHFWFPE----- 65
Cdd:PRK08668 147 KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTSTGfalivflFLLAFGVAKAGIFPLHVWAPDaysea 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  66 ------VLQG--SSLTTALLLSTMMKLPPISILLLSSHSLNPTLLT----ALSTLSIALGGWAGLNQTQTRKILAFSSIS 133
Cdd:PRK08668 227 pqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSEFGTYRGVPLFNyilaWLGNISIIVGTLMAILQEDIKKLIAYSSVA 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 134 HMGWMTIIIIYNPKLTLL--TFYIYT--LMTASIFLTMNT----TNTLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPL 205
Cdd:PRK08668 307 NGGYILVGLGLGTSLGFAggLFHVFNhaLFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPM 386

                        250       260
                 ....*....|....*....|....*
gi 407259475 206 TGFLPKWSIIQELTKQEMTTTATAI 230
Cdd:PRK08668 387 SGFASKWLIFEALISKGMPITAFMA 411
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 100-218 2.01e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.98  E-value: 2.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 100 TLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIiynpKLTLLTFYIYTLMT-----ASIFL-------TM 167
Cdd:COG1009  276 TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLThaffkALLFLgagsvihAT 351

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 407259475 168 NTTNTLKLPTLmtsWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSIIQEL 218
Cdd:COG1009  352 GTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
3-138 2.02e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.91  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475   3 ATTKYFLVQAAASALVLFSSMTNAWSTG--QWDITQL---TYPPSCNLLTTA-----IAIKLGLAPFHFWFPEV-LQGSS 71
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 407259475  72 LTTALLLSTMMKLPP-------ISILLLSSHSLNPTLLTaLSTLSIALGGWAGLNQTQTRKILAFSSISHMGWM 138
Cdd:PRK06473 238 PVSVLLAGVLLKLGTygllrfgVGLFPEAWVYLAPWLAT-WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 100-215 2.89e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.56  E-value: 2.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 100 TLLTALSTLSIALGGWAGLNQTQTRKILAFSSISHMGWMTIIIIYNPKLTLLTFYIY----TLMTASIFLTMNTT----N 171
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 407259475 172 TLKLPTLMTSWTKTPALSTTLMLTLLSLAGLPPLTGFLPKWSII 215
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 58-211 3.13e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 38.36  E-value: 3.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475  58 PFHFWFPEVLQGSSLTTALLLS-TM--------MKLPPISILLLSSHslnpTLLTALSTLSIALGGWAGLNQTQTRKILA 128
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSaTMvkagiyllARLNPVLGGTPLWQ----TILPLFGGLTMLTGALLAVRQTDLKLILA 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 407259475 129 FSSISHMGWMTIIIIYNPKLTLLTFYIY----TLMTASIFLTMNT----TNTLKLPTLMTSWTKTPALSTTLMLTLLSLA 200
Cdd:PRK12647 289 YSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSMA 368

                        170
                 ....*....|.
gi 407259475 201 GLPPLTGFLPK 211
Cdd:PRK12647 369 GLPPLFGFLAK 379
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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