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Conserved domains on  [gi|406856111|gb|AFS64006|]
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ORF1, partial [Torque teno sus virus 1a]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TT_ORF1 super family cl20238
TT viral orf 1; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of ...
 8-87 2.63e-28

TT viral orf 1; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein. The N-terminal half of this protein corresponds to the capsid protein.


The actual alignment was detected with superfamily member pfam02956:

Pssm-ID: 367272  Cd Length: 526  Bit Score: 105.44  E-value: 2.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406856111    8 QYGGGWGSGTITLEGLFNDNELWRNVWSRSNDGMDLARYFGCKLTLYPTEDQDYLFWYDTD--FDQTQLnnLQEYTQPSV 85
Cdd:pfam02956 108 PFGGGFSTETFTLRVLYDEYLRHRNRWTKSNDDLDLARYLGCKFTFYRHPDVDFIVTYDRQppFKDTKL--TYPSTHPGM 185


                  ..
gi 406856111   86 ML 87
Cdd:pfam02956 186 LL 187
 
Name Accession Description Interval E-value
TT_ORF1 pfam02956
TT viral orf 1; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of ...
 8-87 2.63e-28

TT viral orf 1; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein. The N-terminal half of this protein corresponds to the capsid protein.


Pssm-ID: 367272  Cd Length: 526  Bit Score: 105.44  E-value: 2.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406856111    8 QYGGGWGSGTITLEGLFNDNELWRNVWSRSNDGMDLARYFGCKLTLYPTEDQDYLFWYDTD--FDQTQLnnLQEYTQPSV 85
Cdd:pfam02956 108 PFGGGFSTETFTLRVLYDEYLRHRNRWTKSNDDLDLARYLGCKFTFYRHPDVDFIVTYDRQppFKDTKL--TYPSTHPGM 185


                  ..
gi 406856111   86 ML 87
Cdd:pfam02956 186 LL 187
 
Name Accession Description Interval E-value
TT_ORF1 pfam02956
TT viral orf 1; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of ...
 8-87 2.63e-28

TT viral orf 1; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein. The N-terminal half of this protein corresponds to the capsid protein.


Pssm-ID: 367272  Cd Length: 526  Bit Score: 105.44  E-value: 2.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406856111    8 QYGGGWGSGTITLEGLFNDNELWRNVWSRSNDGMDLARYFGCKLTLYPTEDQDYLFWYDTD--FDQTQLnnLQEYTQPSV 85
Cdd:pfam02956 108 PFGGGFSTETFTLRVLYDEYLRHRNRWTKSNDDLDLARYLGCKFTFYRHPDVDFIVTYDRQppFKDTKL--TYPSTHPGM 185


                  ..
gi 406856111   86 ML 87
Cdd:pfam02956 186 LL 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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