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Conserved domains on  [gi|406655177|gb|AFS49944|]
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cytochrome b, partial (mitochondrion) [Mesoplodon hotaula]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-128 2.46e-96

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 281.53  E-value: 2.46e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 406655177  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAF 128
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-128 2.46e-96

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 281.53  E-value: 2.46e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 406655177  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAF 128
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-128 4.96e-52

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 162.92  E-value: 4.96e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   9 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 406655177  89 MFFICLYAHIGRGLYYGSYI--FQDTWNIGVILLFTVMATAF 128
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAF 122
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-128 9.03e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 151.77  E-value: 9.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   18 FIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 406655177   98 IGRGLYYG--SYIFQDTWNIGVILLFTVMATAF 128
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAF 113
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-128 2.47e-43

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 146.09  E-value: 2.47e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIIN---------NAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 406655177  72 DVNYGWIIRNLHANGASMFFICLYAHIGRGLYYGSYIF--QDTWNIGVILLFTVMATAF 128
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAF 139
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-128 2.46e-96

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 281.53  E-value: 2.46e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 406655177  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAF 128
CYTB MTH00131
cytochrome b; Provisional
 1-128 7.04e-89

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 262.67  E-value: 7.04e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 406655177  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAF 128
CYTB MTH00074
cytochrome b; Provisional
 1-128 1.15e-86

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 256.92  E-value: 1.15e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 406655177  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAF 129
CYTB MTH00119
cytochrome b; Provisional
 1-128 5.31e-86

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 255.21  E-value: 5.31e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 406655177  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAF 129
CYTB MTH00191
cytochrome b; Provisional
 4-128 8.24e-81

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 241.36  E-value: 8.24e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406655177  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAF 125
CYTB MTH00034
cytochrome b; Validated
 4-128 8.45e-77

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 231.90  E-value: 8.45e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406655177  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAF 128
CYTB MTH00145
cytochrome b; Provisional
 1-128 1.48e-76

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 230.95  E-value: 1.48e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 406655177  81 NLHANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAF 129
CYTB MTH00156
cytochrome b; Provisional
 11-128 4.05e-76

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 229.28  E-value: 4.05e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177  11 MKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 406655177  91 FICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAF 118
CYTB MTH00016
cytochrome b; Validated
 4-128 3.96e-72

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 219.93  E-value: 3.96e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406655177  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAF 129
CYTB MTH00224
cytochrome b; Provisional
 4-128 2.03e-61

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 192.44  E-value: 2.03e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406655177  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAF 129
CYTB MTH00022
cytochrome b; Validated
 4-128 6.70e-60

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 188.37  E-value: 6.70e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406655177  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAF 127
CYTB MTH00053
cytochrome b; Provisional
 4-128 2.74e-58

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 184.52  E-value: 2.74e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   4 IRKTHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406655177  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAF 129
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-128 4.96e-52

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 162.92  E-value: 4.96e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   9 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 406655177  89 MFFICLYAHIGRGLYYGSYI--FQDTWNIGVILLFTVMATAF 128
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAF 122
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-128 9.03e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 151.77  E-value: 9.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   18 FIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 406655177   98 IGRGLYYG--SYIFQDTWNIGVILLFTVMATAF 128
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAF 113
CYTB MTH00033
cytochrome b; Provisional
 4-128 1.24e-45

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 151.63  E-value: 1.24e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   4 IRKTHPLMKIinNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLH 83
Cdd:MTH00033   3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406655177  84 ANGASMFFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAF 125
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-128 2.47e-43

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 146.09  E-value: 2.47e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177   1 MTNIRKTHPLMKIIN---------NAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 406655177  72 DVNYGWIIRNLHANGASMFFICLYAHIGRGLYYGSYIF--QDTWNIGVILLFTVMATAF 128
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAF 139
CYTB MTH00086
cytochrome b; Provisional
 12-128 7.60e-35

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 123.13  E-value: 7.60e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177  12 KIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 406655177  92 ICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAF 117
CYTB MTH00046
cytochrome b; Validated
 10-128 3.83e-23

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 91.97  E-value: 3.83e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177  10 LMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 406655177  90 FFICLYAHIGRGLYYGSYIFQDTWNIGVILLFTVMATAF 128
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAF 119
PRK03735 PRK03735
cytochrome b6; Provisional
 33-128 3.48e-19

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 79.37  E-value: 3.48e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177  33 FGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAHIGRGLYYGSYI--FQ 110
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                         90
                 ....*....|....*...
gi 406655177 111 DTWNIGVILLFTVMATAF 128
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGF 141
petB CHL00070
cytochrome b6
 24-119 9.25e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 64.74  E-value: 9.25e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406655177  24 PSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRNLHANGASMFFICLYAHIGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90
                 ....*....|....*...
gi 406655177 104 YGSYI--FQDTWNIGVIL 119
Cdd:CHL00070 107 TGGFKkpRELTWVTGVVL 124
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-128 1.18e-05

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 42.23  E-value: 1.18e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 406655177   88 SMFFICLYAHIGRGLYYGSYIF--QDTWNIGVILLFTVMATAF 128
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGF 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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