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Conserved domains on  [gi|406044700|gb|AFS31291|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Trimerotropis sp. Argentina]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-275 2.84e-105

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 317.08  E-value: 2.84e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 80
Cdd:MTH00165 231 IRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFL 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  81 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTAS 160
Cdd:MTH00165 311 CAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVS 390

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 240
Cdd:MTH00165 391 YSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY 470

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 406044700 241 LISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTN 275
Cdd:MTH00165 471 ELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTY 505
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-275 2.84e-105

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 317.08  E-value: 2.84e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 80
Cdd:MTH00165 231 IRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFL 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  81 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTAS 160
Cdd:MTH00165 311 CAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVS 390

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 240
Cdd:MTH00165 391 YSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY 470

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 406044700 241 LISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTN 275
Cdd:MTH00165 471 ELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTY 505
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-242 7.22e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 159.55  E-value: 7.22e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:COG1009  262 ARLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLF 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  80 MCAGSMIHNLSdSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILE-VLCLSWVNFLIFFLYFISTGLT 158
Cdd:COG1009  342 LGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLT 420

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 159 ASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWL---------IFPVPYMIVLPWYLSFLTL 229
Cdd:COG1009  421 AFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPL 500

                        250
                 ....*....|...
gi 406044700 230 FVVIVGSYLGYLI 242
Cdd:COG1009  501 LLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-242 6.62e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 140.49  E-value: 6.62e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700    1 IRFSPM-LLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:TIGR01974 264 ARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLF 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTA 159
Cdd:TIGR01974 344 LGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTA 423

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIV-----------LPWYLSFLT 228
Cdd:TIGR01974 424 FYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSP 503

                         250
                  ....*....|....
gi 406044700  229 LFVVIVGSYLGYLI 242
Cdd:TIGR01974 504 TAVAILGILLAYLL 517
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-154 1.09e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 1.09e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700    1 IRFSPMLLTYNYGW--FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFK 75
Cdd:pfam00361 133 IRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFS 212

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 406044700   76 ALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFIS 154
Cdd:pfam00361 213 AGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-275 2.84e-105

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 317.08  E-value: 2.84e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 80
Cdd:MTH00165 231 IRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFL 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  81 CAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTAS 160
Cdd:MTH00165 311 CAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVS 390

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 240
Cdd:MTH00165 391 YSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY 470

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 406044700 241 LISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTN 275
Cdd:MTH00165 471 ELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTY 505
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-274 4.62e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 228.38  E-value: 4.62e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00209 226 IRFFPSLfSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLF 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00209 306 ICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTA 385

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLG 239
Cdd:MTH00209 386 AYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLM 465

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 406044700 240 YLISDfdyfYGLFSLNFLSFVSFVGSMWFMPFLST 274
Cdd:MTH00209 466 YMVLK----KNFFLIKGYKVNYFLSQMWFLPDLSS 496
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-275 4.99e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 228.19  E-value: 4.99e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00151 227 IRFFPFLsSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLF 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00151 307 LCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTA 386

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLG 239
Cdd:MTH00151 387 LYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLS 466

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 406044700 240 YLISDFDYFYGLFSLNflsfVSFVGSMWFMPFLSTN 275
Cdd:MTH00151 467 FGFWDSGFSSSKMVKL----SFFFSSMWFLSPLSSQ 498
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-274 1.13e-65

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 214.63  E-value: 1.13e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00207 230 IRFYPFLsSTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLF 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00207 310 VCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTA 389

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLG 239
Cdd:MTH00207 390 AYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLA 469

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 406044700 240 YLISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLST 274
Cdd:MTH00207 470 WLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSS 504
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-262 6.14e-53

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 181.30  E-value: 6.14e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLLTYNY-GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00211 255 IRLSPLFQNNQLiLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLF 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00211 335 MCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTA 414

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIV-LPWYLSFLTLFVVIVGSYL 238
Cdd:MTH00211 415 AYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLL 494

                        250       260
                 ....*....|....*....|....*
gi 406044700 239 G-YLISDFDYFYGLFSLNFLSFVSF 262
Cdd:MTH00211 495 GlELVNLTHKQLKTSTLSFSNMLGY 519
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-178 1.42e-52

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 180.36  E-value: 1.42e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLLTYNYGWFL-LLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00004 260 IRTHPLLQNNQTALTIcLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLF 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00004 340 LCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTA 419

                        170
                 ....*....|....*....
gi 406044700 160 SYSFRLFYYSMMGDNNFYP 178
Cdd:MTH00004 420 AYSLRMILLVQTGFPRTPP 438
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-262 2.57e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 169.38  E-value: 2.57e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLltYNYGWFL---LLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKAL 77
Cdd:MTH00208 287 IRTSPLI--SNSPWFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAM 364

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  78 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGL 157
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 158 TASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPyMIVLPWYLSFLTLFVVIVGSY 237
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAA 523

                        250       260
                 ....*....|....*....|....*
gi 406044700 238 LGYLISDFdYFYGLFSLNFLSFVSF 262
Cdd:MTH00208 524 FSFSFLLS-LSSNPINSNFFSFLSN 547
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-235 1.16e-47

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 166.95  E-value: 1.16e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLLTYNYGWFLLL-VGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00108 261 IRFHPLMENNKTIQTLTLcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLF 340

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00108 341 MCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTA 420

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 406044700 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFP--VPYMiVLPWYLSFLTLFVVIVG 235
Cdd:MTH00108 421 AYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-243 5.13e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 160.07  E-value: 5.13e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPML------LTynygwFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALF 74
Cdd:MTH00066 258 IRFHPLLennqtaLT-----ICLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFF 332

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  75 KALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFIS 154
Cdd:MTH00066 333 KAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIA 412

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 155 TGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIV-LPWYLSFLTLFVVI 233
Cdd:MTH00066 413 TSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILtMPTFMKLAALLVTL 492

                        250
                 ....*....|
gi 406044700 234 VGSYLGYLIS 243
Cdd:MTH00066 493 LGLLIALDLA 502
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-242 7.22e-45

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 159.55  E-value: 7.22e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:COG1009  262 ARLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLF 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  80 MCAGSMIHNLSdSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILE-VLCLSWVNFLIFFLYFISTGLT 158
Cdd:COG1009  342 LGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLT 420

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 159 ASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWL---------IFPVPYMIVLPWYLSFLTL 229
Cdd:COG1009  421 AFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPL 500

                        250
                 ....*....|...
gi 406044700 230 FVVIVGSYLGYLI 242
Cdd:COG1009  501 LLSLLGIALGYLL 513
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 36-178 9.29e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 159.23  E-value: 9.29e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  36 DLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVS 115
Cdd:MTH00137 302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 406044700 116 SLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYP 178
Cdd:MTH00137 382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNP 444
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-242 6.62e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 140.49  E-value: 6.62e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700    1 IRFSPM-LLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:TIGR01974 264 ARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLF 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTA 159
Cdd:TIGR01974 344 LGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTA 423

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIV-----------LPWYLSFLT 228
Cdd:TIGR01974 424 FYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSP 503

                         250
                  ....*....|....
gi 406044700  229 LFVVIVGSYLGYLI 242
Cdd:TIGR01974 504 TAVAILGILLAYLL 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 15-242 1.34e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 139.91  E-value: 1.34e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  15 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQD 94
Cdd:PRK06590 283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  95 IRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVlCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG-- 172
Cdd:PRK06590 363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEA-AFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGke 441

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 173 -DNNFYPSyffdDKSYFISFGMIGLLFVAVFGG-----KFLSWLIFP-----VPYMIVLPWYLSFLTLFVVIVGSYLGYL 241
Cdd:PRK06590 442 kEKIHHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIALAWL 517


                 .
gi 406044700 242 I 242
Cdd:PRK06590 518 L 518
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 18-257 4.13e-37

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 138.29  E-value: 4.13e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  18 LVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIRF 97
Cdd:MTH00020 279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  98 MGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 177
Cdd:MTH00020 359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLK 438

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 178 PSYFFD--DKSYFISFGMIGLLFVAVFGGKFLSWLIF--------PVPYMI-VLPWYLSFLTLFVVIV-GSYLGYLISDF 245
Cdd:MTH00020 439 KAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppIVPLSIkLLPVFLSLGGIGLVIIlYFYSSKTFRVP 518

                        250
                 ....*....|..
gi 406044700 246 DYFYGLFSLNFL 257
Cdd:MTH00020 519 FSFIGRNSYTFL 530
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 3-267 9.50e-37

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 137.45  E-value: 9.50e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   3 FSPMLLTynygwFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCA 82
Cdd:MTH00210 270 GSPLALT-----IVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSA 344

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  83 GSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTASYS 162
Cdd:MTH00210 345 GSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYS 424

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 163 FRLFYYSMMGDNNFYPSYFF--DDKSYFISFGMIGLLFVAVF---GGK--FLSWLIFPvpymiVLPWYLSFLTLFVVIVG 235
Cdd:MTH00210 425 IRLIYLTFITNTNSKKEVFIgvHESSWNITFPLLLLAFGSIFvgyLGKevVLSNVIPP-----IVPNSIKMIPLLFSLLG 499

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 406044700 236 SYLGYLISDFDYFY------GLFSLNFLSFVSFVGSMW 267
Cdd:MTH00210 500 ALLAFVIYNSMVFLikisrrGVSIRLYHVIYTFLNSAW 537
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
15-173 2.17e-31

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 122.44  E-value: 2.17e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  15 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSD--- 91
Cdd:PRK07376 293 VIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvg 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  92 -----SQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSwvNFLIFFLYFISTGLTASYSFRLF 166
Cdd:PRK07376 373 hdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMY 450


                 ....*..
gi 406044700 167 YYSMMGD 173
Cdd:PRK07376 451 FLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 18-191 1.03e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 109.21  E-value: 1.03e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  18 LVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNL-------- 89
Cdd:CHL00025 296 LIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgysp 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  90 SDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDlilEVLCLSWVNFLIF-FLYFISTGLTASYSFRLFYY 168
Cdd:CHL00025 376 DKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSWLYSPIFaIIAWSTAGLTAFYMFRIYLL 452

                        170       180
                 ....*....|....*....|....*.
gi 406044700 169 SMMGD---NNFYPSYFFDDKSYFISF 191
Cdd:CHL00025 453 TFEGHlrvHFQNYSGKKNSSFYSISL 478
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-154 1.09e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 1.09e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700    1 IRFSPMLLTYNYGW--FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFK 75
Cdd:pfam00361 133 IRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFS 212

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 406044700   76 ALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFIS 154
Cdd:pfam00361 213 AGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 12-168 1.00e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 96.37  E-value: 1.00e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  12 YGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCAGSMIHN 88
Cdd:COG0651  271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtPLGLagALFHLLNHALAKALLFLAAGAIERA 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  89 LsDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLcLSWVNFLIFFLYFISTGLTASYSFRLFYY 168
Cdd:COG0651  351 T-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 18-137 5.98e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 95.03  E-value: 5.98e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  18 LVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSM-GYYGLAFFHLLTHALFKALLFMCAGSMIHNLS-DSQDI 95
Cdd:MTH00032 294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 406044700  96 RFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEV 137
Cdd:MTH00032 374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 161-275 7.72e-22

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 89.53  E-value: 7.72e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 240
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 406044700  241 LISDFDYFYGLFSLNFlSFVSFVGSMWFMPFLSTN 275
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHR 114
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 2-262 1.70e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 90.75  E-value: 1.70e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   2 RFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 81
Cdd:MTH00095 216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  82 AGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTASY 161
Cdd:MTH00095 296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 162 SFRLFYysmmgdnNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIfpVPYMIVLPWYLSFLTLFVVIVGSYLGYL 241
Cdd:MTH00095 376 SYRLWK-------SFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVFFLWWL--NFNLLNLPSLFLYLDFYVPLFYLFMIML 446

                        250       260
                 ....*....|....*....|.
gi 406044700 242 ISDFDYFYGLFSLNFLSFVSF 262
Cdd:MTH00095 447 FSFFFFKLLFKELKYKFFVDY 467
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-172 9.30e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 85.32  E-value: 9.30e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  11 NYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLG---LMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIH 87
Cdd:PRK08375 269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  88 NlSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSK-DLILEVLCLSWVNFLIFFLyfISTGLTASYSFRLF 166
Cdd:PRK08375 349 T-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                 ....*.
gi 406044700 167 YYSMMG 172
Cdd:PRK08375 426 YRAFFG 431
PRK12646 PRK12646
DUF4040 family protein;
2-138 5.58e-18

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 83.65  E-value: 5.58e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   2 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-------------YYGL---- 63
Cdd:PRK12646 262 RFTPLLgLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfa 341

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 406044700  64 AFFHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVL 138
Cdd:PRK12646 342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDAL 415
PRK12650 PRK12650
DUF4040 family protein;
1-138 6.34e-18

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 83.55  E-value: 6.34e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPML---LTYNygWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALF 74
Cdd:PRK12650 259 LRFSPVFhdvAVWN--WLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpfaLTAAVVHTLAHALF 336

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 406044700  75 KALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVL 138
Cdd:PRK12650 337 KSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAF 399
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 14-172 1.12e-17

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 82.67  E-value: 1.12e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  14 WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG------------YYGLAF----FHLLTHALFKAL 77
Cdd:PRK12645 275 WTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHLINHATFKGS 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  78 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILE-VLCLSWVNF--------LIF 148
Cdd:PRK12645 355 LFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsMLNATEANLfsldtwgvLFP 433

                        170       180
                 ....*....|....*....|....
gi 406044700 149 FLYFISTGLTASYSFRLFYYSMMG 172
Cdd:PRK12645 434 VIAWVASVFTFVYSIIFIFKTFFG 457
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-164 2.30e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 78.69  E-value: 2.30e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  14 WFLL--LVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHN 88
Cdd:PRK12648 270 WFWIvgGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSpLAAvaAIFHIINHATFKASLFMAAGIIDHE 349

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  89 lSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDL----ILEVLCLSWVNFLIFFLYFISTGLTASYSFR 164
Cdd:PRK12648 350 -TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-167 1.32e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 76.50  E-value: 1.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  14 WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-----YYGLAFfhLLTHALFKALLFMCAGSMIHN 88
Cdd:PRK12644 268 PTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGtrdaaLAGLAM--LLAHALFKAALFLVVGIIDHS 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  89 lSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVL----CLSWVNFLIFFLYFISTGLTASYSFR 164
Cdd:PRK12644 346 -TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLR 424


                 ...
gi 406044700 165 LFY 167
Cdd:PRK12644 425 FLW 427
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 16-167 1.99e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 75.78  E-value: 1.99e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  16 LLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNlSDS 92
Cdd:PRK12667 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTqLGLaaALFHIINHAIAKSLLFLASGVFIHA-AGT 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 406044700  93 QDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSwvNFLIFFLY-FISTGLTASYSFRLFY 167
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASAISLVGYFRAWY 450
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 2-138 4.56e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 74.96  E-value: 4.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   2 RFSPML-LTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKAL 77
Cdd:PRK12647 247 RLNPVLgGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGA 326

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 406044700  78 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVL 138
Cdd:PRK12647 327 LFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAL 386
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-136 9.37e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 74.09  E-value: 9.37e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  14 WFLLL--VGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYY-------GLAFFHLLTHALFKALLFMCAGS 84
Cdd:PRK12649 277 WFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYhepglgvAAATFHLLNHATFKACLFLVAGI 356

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406044700  85 MIHNLSdSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK12649 357 VAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-172 6.16e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 71.28  E-value: 6.16e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   3 FSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---------------AFFH 67
Cdd:PRK08376 277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  68 LLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLswVNFLI 147
Cdd:PRK08376 357 IVNHALYKALLFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                        170       180
                 ....*....|....*....|....*
gi 406044700 148 FFLYFISTGLTASYSFRLFYYSMMG 172
Cdd:PRK08376 434 GVIAMIGSVLTLASFVKVFHTAFFG 458
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 15-159 6.67e-14

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 71.09  E-value: 6.67e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  15 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNlSDSQD 94
Cdd:PRK07390 286 VLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQD 364

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 406044700  95 IRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLclsWVNFLIFFLYFIST-GLTA 159
Cdd:PRK07390 365 LTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWALLRLADGL---WAVSPWLVGVLLLVnALTA 427
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 14-165 1.22e-12

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 67.48  E-value: 1.22e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  14 WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKALLFMCAGSMIHNLS 90
Cdd:PRK08377 274 KLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLG 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 406044700  91 DSQDIRFMGSIVNfMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILeVLCLSWVNFLIFFLYFISTGLTASYSFRL 165
Cdd:PRK08377 354 GTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 12-138 6.24e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 65.52  E-value: 6.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  12 YGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSM----GYYGL----------AFFHLLTHALFKAL 77
Cdd:PRK08667 269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifGVYGLdtlallalggALFHSLNHALFKSL 348

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 406044700  78 LFMCAGSMIHNLSDsQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVL 138
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESF 408
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 13-141 3.12e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 63.37  E-value: 3.12e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  13 GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLA--------------FFHLLTHALFKALL 78
Cdd:PRK06521 276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFIAygmpllaalaltaaLYHLLNHALFKSLL 355

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 406044700  79 FMCAGSMIHNLSdSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLS 141
Cdd:PRK06521 356 FLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-201 4.02e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 62.91  E-value: 4.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  13 GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMM---SILSMGYYGLAFFHLLTHALFKALLFMCAGSmIHNL 89
Cdd:PRK06589 280 FNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSL 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  90 SDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLS---WVNFLIFFLYFISTGLTASYSFRLF 166
Cdd:PRK06589 359 KKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKIL 438

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 406044700 167 YysmmgdNNFYPSYffdDKSYFISFGMIGLLFVAV 201
Cdd:PRK06589 439 S------SIYKPSL---SENSFITKSLPYLMQISV 464
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 12-128 4.03e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 62.92  E-value: 4.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  12 YGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLA--------------FFHLLTHALFKAL 77
Cdd:PRK08042 244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 406044700  78 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGF 128
Cdd:PRK08042 324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 13-167 5.95e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 62.32  E-value: 5.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  13 GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILSMGYYGLA--FFHLLTHALFKALLFMCAGSMIHNL 89
Cdd:PRK08668 272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGyILVGLGLGTSLGFAggLFHVFNHALFKGLFFLIFAAVIYRT 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 406044700  90 SDSQdIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLcLSWVNFLIFFLYFISTGLTASYSFRLFY 167
Cdd:PRK08668 352 GTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-172 1.11e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.64  E-value: 1.11e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLL---TYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALF 74
Cdd:COG1008  260 LRFALPLFpeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLI 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  75 KALLFMCAGsMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILevLCLSWVNFLIFFLYFIS 154
Cdd:COG1008  340 TAALFLLVG-VLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALG 416

                        170
                 ....*....|....*...
gi 406044700 155 TGLTASYSFRLFYYSMMG 172
Cdd:COG1008  417 LILTAAYLLWMYQRVFFG 434
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-161 1.18e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 61.51  E-value: 1.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   7 LLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGyyglAFFHLlTHALFKALLFMCAGSmI 86
Cdd:PRK07234 239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGA-L 312

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 406044700  87 HNLSDSQDIRFMGSIVNFMPLTs*cfnVSSLSLCGMPFLAGFYSKDLILEVLcLSWVNFLIfflyFISTGLTASY 161
Cdd:PRK07234 313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLKNL-LPWQAIAL----NLAAVGTAAS 377
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 13-135 2.53e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 60.37  E-value: 2.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  13 GWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL------AFFHLLTHALFKALLFMCAGSMI 86
Cdd:PRK06525 272 GYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlalegSIAYIFNHAFAKSLFFLVAGALS 351

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406044700  87 HNLSdSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLIL 135
Cdd:PRK06525 352 YSCG-TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-178 5.58e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 59.19  E-value: 5.58e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  15 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHnLSD 91
Cdd:PRK07691 277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  92 SQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVlCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMM 171
Cdd:PRK07691 356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEG-TFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFW 434


                 ....*..
gi 406044700 172 GDNNFYP 178
Cdd:PRK07691 435 GEPKGYD 441
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 2-244 6.70e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 59.12  E-value: 6.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   2 RFSPMLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 81
Cdd:MTH00063 209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  82 AGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYFISTGLTASY 161
Cdd:MTH00063 289 VGDVMSGSGGSQSSNCVYSSILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLY 368

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700 162 SFRLFYYSMMGDNNFYPSYFFDdksYFISFGMigllfvaVFGGKFLSWLIFP-VPYMIVLPWYLSFLTLFVVIVGSYLGY 240
Cdd:MTH00063 369 SFRLCLILFGVKSSLSSGVRFL---FFNSGLM-------VFLWLFINYYVFLlLDEVVYLGVFISLVLLLVQLLGLLVGV 438


                 ....
gi 406044700 241 LISD 244
Cdd:MTH00063 439 LFYD 442
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
25-135 2.09e-09

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 57.60  E-value: 2.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  25 FMAGLGANF---EFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNLSDSqDIRFM 98
Cdd:PRK12668 249 AMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIGTaLAIngAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KLTEL 327

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 406044700  99 GSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLIL 135
Cdd:PRK12668 328 GGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-84 2.51e-09

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 57.40  E-value: 2.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   1 IRFSPMLLTYNYG-WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:PRK08168 250 IRFAPLLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAF 329


                 ....*
gi 406044700  80 MCAGS 84
Cdd:PRK08168 330 LSASE 334
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 36-173 5.97e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 53.28  E-value: 5.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  36 DLKSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTS*CF 112
Cdd:PRK05846 300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 406044700 113 NVSSLSLCGMPFLAGFYSKDLILevLCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGD 173
Cdd:PRK05846 379 LFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGP 437
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-137 2.30e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.19  E-value: 2.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   6 MLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCA 82
Cdd:PRK12662 272 VFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVS 351

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 406044700  83 GSMIHNLsDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEV 137
Cdd:PRK12662 352 GSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDA 405
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-136 2.05e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 45.34  E-value: 2.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  15 FLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFKALLFMCAGsMIHNLSD 91
Cdd:PRK12665 275 LLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAG 353

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406044700  92 SQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK12665 354 SSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 2-84 2.07e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 45.41  E-value: 2.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   2 RFSPmLLTYNYGWFLLLVGCMTMFMAGLGANF-EFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 80
Cdd:PRK08601 255 RFSP-LFHDDIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                 ....
gi 406044700  81 CAGS 84
Cdd:PRK08601 334 QSGS 337
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
16-175 2.27e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 2.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  16 LLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKALLFMCAGSMIHnLSDS 92
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  93 QDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVlCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG 172
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQG-ALDNGAYILLALMLITSLITMYSLFRIFFLAYWG 432


                 ...
gi 406044700 173 DNN 175
Cdd:PRK12663 433 DKD 435
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 6-212 4.61e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 40.96  E-value: 4.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   6 MLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSM 85
Cdd:MTH00160 136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  86 IHNLSDSQDIRFMGSIVNFMPLTS*cfnvssLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLyFISTGLTASYSFRL 165
Cdd:MTH00160 216 IFFLNQLFNSNNKSKKIKFLLFLNL------LSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL-IMSSLITLYFYLRI 288

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 406044700 166 FYYSMMGdNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGKFLSWLIF 212
Cdd:MTH00160 289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 36-135 5.48e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 41.07  E-value: 5.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  36 DLKSIIALSTLSQLGLMMSILSMGYyGLAFF----HLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTS*C 111
Cdd:PRK06458 304 DIKRLFAYSSIEHMGLIAFALGIGG-PLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWG 381

                         90       100
                 ....*....|....*....|....
gi 406044700 112 FNVSSLSLCGMPFLAGFYSKDLIL 135
Cdd:PRK06458 382 LMLGALAIAGMPPFGVFISEFLIL 405
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-212 8.66e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 40.48  E-value: 8.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   6 MLLTYNYGWFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-----YGLAFFHLLTHALFKALLFM 80
Cdd:PRK12664 194 LLLFFSGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGssgvaIGILILQIVLSVVYQTLLFM 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  81 CAGSMIhNLSDSQDIRFMGSIVNfMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLCLSWVNFLIFFLYF--ISTGLT 158
Cdd:PRK12664 274 VADSVI-NRTRKFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLF 351

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 406044700 159 ASYSFRLFYYSMMGDNNFYPSYffdDKSYFIS-FGMIGLLFVAVFGGKFLSWLIF 212
Cdd:PRK12664 352 ASVGLKFFWYAFISKSKSKPEA---EKVYIGSkLSMIILVLICVVLGMFNSYLLF 403
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-131 1.26e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 39.71  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700   3 FSPMLLTYNYGWFLLLVG--CMTMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKAL 77
Cdd:COG1007  257 LVEAFPGLAADWQLLLAVlaVLSMTVGNLAALAQTNVKRMLAYSSIAHAGyLLLGLAAGTPLGVsaALFYLLAYLFMNLG 336

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 406044700  78 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSK 131
Cdd:COG1007  337 AFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 16-166 1.33e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 39.74  E-value: 1.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  16 LLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAF---FHLLTHALFKALLFMCAGsMIHNLSDS 92
Cdd:PRK08676 276 LIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRS 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 406044700  93 QDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILEVLC--LSWVNFLIFFLYFISTGLTASYSFRLF 166
Cdd:PRK08676 355 DRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGgiSVWLVLAVLLLLLLAASSFAIFLLKAF 430
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
14-136 3.12e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.86  E-value: 3.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044700  14 WFLLLVGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGLA--FFHLLTHALFKALLFMCAGSmIHNLS 90
Cdd:PRK06277 267 GVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTpLGIVagIFHAINHVIYKSALFLGAGI-VSYRT 345

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 406044700  91 DSQDIRFMGSIVNFMPLTS*CFNVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK06277 346 KTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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