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Conserved domains on  [gi|406044698|gb|AFS31290|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Trimerotropis sp. Argentina]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-299 5.55e-113

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 337.88  E-value: 5.55e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 80
Cdd:MTH00165 231 IRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFL 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  81 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 160
Cdd:MTH00165 311 CAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVS 390

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTFFVVIVGSYLGY 240
Cdd:MTH00165 391 YSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY 470

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 406044698 241 LISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW*DF 299
Cdd:MTH00165 471 ELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEY 529
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-299 5.55e-113

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 337.88  E-value: 5.55e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 80
Cdd:MTH00165 231 IRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFL 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  81 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 160
Cdd:MTH00165 311 CAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVS 390

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTFFVVIVGSYLGY 240
Cdd:MTH00165 391 YSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY 470

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 406044698 241 LISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW*DF 299
Cdd:MTH00165 471 ELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEY 529
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-242 2.93e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 158.78  E-value: 2.93e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPML-LT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:COG1009  262 ARLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLF 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  80 MCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFISTGLT 158
Cdd:COG1009  342 LGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLT 420

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 159 ASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYMIVLPWYLSFLTF 229
Cdd:COG1009  421 AFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPL 500

                        250
                 ....*....|...
gi 406044698 230 FVVIVGSYLGYLI 242
Cdd:COG1009  501 LLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-242 1.48e-39

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 145.89  E-value: 1.48e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698    1 IRFSPM-LLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:TIGR01974 264 ARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLF 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTA 159
Cdd:TIGR01974 344 LGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTA 423

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-----------LPWYLSFLT 228
Cdd:TIGR01974 424 FYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSP 503

                         250
                  ....*....|....
gi 406044698  229 FFVVIVGSYLGYLI 242
Cdd:TIGR01974 504 TAVAILGILLAYLL 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 161-296 4.40e-29

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 109.18  E-value: 4.40e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTFFVVIVGSYLGY 240
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 406044698  241 LISDFDYFYGLFSLNFlSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW 296
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGW 135
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-299 5.55e-113

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 337.88  E-value: 5.55e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 80
Cdd:MTH00165 231 IRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFL 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  81 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 160
Cdd:MTH00165 311 CAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVS 390

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTFFVVIVGSYLGY 240
Cdd:MTH00165 391 YSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY 470

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 406044698 241 LISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW*DF 299
Cdd:MTH00165 471 ELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEY 529
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-296 2.29e-74

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 237.82  E-value: 2.29e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPML-LT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00151 227 IRFFPFLsSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLF 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00151 307 LCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTA 386

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTFFVVIVGSYLG 239
Cdd:MTH00151 387 LYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLS 466

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 406044698 240 YLISDFDYFYGLFSLNflsfVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW 296
Cdd:MTH00151 467 FGFWDSGFSSSKMVKL----SFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGW 519
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-296 2.40e-74

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 238.01  E-value: 2.40e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPML-LT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00209 226 IRFFPSLfSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLF 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00209 306 ICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTA 385

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTFFVVIVGSYLG 239
Cdd:MTH00209 386 AYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLM 465

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 406044698 240 YLISDfdyfYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW 296
Cdd:MTH00209 466 YMVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGW 518
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-299 1.23e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 231.19  E-value: 1.23e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLLT*NygWF---LLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKAL 77
Cdd:MTH00207 230 IRFYPFLSSTY--WFnpaLLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKAL 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  78 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGL 157
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 158 TASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTFFVVIVGSY 237
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 406044698 238 LGYLISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW*DF 299
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEM 529
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-299 5.41e-54

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 184.77  E-value: 5.41e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLLT*NY-GWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00211 255 IRLSPLFQNNQLiLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLF 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00211 335 MCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTA 414

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-LPWYLSFLTFFVVIVGSYL 238
Cdd:MTH00211 415 AYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLL 494

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 406044698 239 GylisdFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFG-YNSSKSLNYGW*DF 299
Cdd:MTH00211 495 G-----LELVNLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGqTLSTHLMDLGWYEK 551
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-178 2.11e-52

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 180.74  E-value: 2.11e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLLT*NYGWFL-LLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00004 260 IRTHPLLQNNQTALTIcLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLF 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00004 340 LCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTA 419

                        170
                 ....*....|....*....
gi 406044698 160 SYSFRLFYYSMMGDNNFYP 178
Cdd:MTH00004 420 AYSLRMILLVQTGFPRTPP 438
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-299 1.06e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 174.00  E-value: 1.06e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLlt*NYGWFL---LLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKAL 77
Cdd:MTH00208 287 IRTSPLI--SNSPWFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAM 364

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  78 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGL 157
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 158 TASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPyMIVLPWYLSFLTFFVVIVGSY 237
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAA 523

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 406044698 238 LGYLISdfdYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW*DF 299
Cdd:MTH00208 524 FSFSFL---LSLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSEN 582
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-235 2.42e-47

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 166.95  E-value: 2.42e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLLT*NYGWFLLL-VGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:MTH00108 261 IRFHPLMENNKTIQTLTLcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLF 340

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTA 159
Cdd:MTH00108 341 MCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTA 420

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 406044698 160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFP--VPYMiVLPWYLSFLTFFVVIVG 235
Cdd:MTH00108 421 AYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-243 7.93e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 160.07  E-value: 7.93e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPML------LT*nygwfLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALF 74
Cdd:MTH00066 258 IRFHPLLennqtaLTI-----CLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFF 332

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  75 KALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFIS 154
Cdd:MTH00066 333 KAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIA 412

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 155 TGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-LPWYLSFLTFFVVI 233
Cdd:MTH00066 413 TSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILtMPTFMKLAALLVTL 492

                        250
                 ....*....|
gi 406044698 234 VGSYLGYLIS 243
Cdd:MTH00066 493 LGLLIALDLA 502
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-178 2.81e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 158.84  E-value: 2.81e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPML------LT*nygwfLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALF 74
Cdd:MTH00137 266 IRLSPLMennqtaLTT-----CLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFF 340

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  75 KALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFIS 154
Cdd:MTH00137 341 KAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIA 420

                        170       180
                 ....*....|....*....|....
gi 406044698 155 TGLTASYSFRLFYYSMMGDNNFYP 178
Cdd:MTH00137 421 TSFTAVYSLRVVFFVSMGHPRFNP 444
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-242 2.93e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 158.78  E-value: 2.93e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPML-LT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:COG1009  262 ARLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLF 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  80 MCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFISTGLT 158
Cdd:COG1009  342 LGAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLT 420

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 159 ASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYMIVLPWYLSFLTF 229
Cdd:COG1009  421 AFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPL 500

                        250
                 ....*....|...
gi 406044698 230 FVVIVGSYLGYLI 242
Cdd:COG1009  501 LLSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-242 1.48e-39

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 145.89  E-value: 1.48e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698    1 IRFSPM-LLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:TIGR01974 264 ARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLF 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   80 MCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTA 159
Cdd:TIGR01974 344 LGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTA 423

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  160 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-----------LPWYLSFLT 228
Cdd:TIGR01974 424 FYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSP 503

                         250
                  ....*....|....
gi 406044698  229 FFVVIVGSYLGYLI 242
Cdd:TIGR01974 504 TAVAILGILLAYLL 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 15-242 1.04e-38

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 143.76  E-value: 1.04e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  15 FLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQD 94
Cdd:PRK06590 283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  95 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG-- 172
Cdd:PRK06590 363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGke 441

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 173 -DNNFYPSyffdDKSYFISFGMIGLLFVAVFGG-----SFLSWLIFP-----VPYMIVLPWYLSFLTFFVVIVGSYLGYL 241
Cdd:PRK06590 442 kEKIHHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIALAWL 517


                 .
gi 406044698 242 I 242
Cdd:PRK06590 518 L 518
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 3-298 1.98e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 142.84  E-value: 1.98e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   3 FSPMLLT*nygwFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCA 82
Cdd:MTH00210 270 GSPLALT-----IVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSA 344

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  83 GSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYS 162
Cdd:MTH00210 345 GSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYS 424

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 163 FRLFYYSMMGDNNFYPSYFF--DDKSYFISFGMIGLLFVAVFGGS-----FLSWLIFPvpymiVLPWYLSFLTFFVVIVG 235
Cdd:MTH00210 425 IRLIYLTFITNTNSKKEVFIgvHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPP-----IVPNSIKMIPLLFSLLG 499

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 406044698 236 SYLGYLISDFDYFY------GLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYnsskSLNYGW*D 298
Cdd:MTH00210 500 ALLAFVIYNSMVFLikisrrGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGH----LITYRIID 564
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 18-257 9.40e-38

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 140.98  E-value: 9.40e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  18 LVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIRF 97
Cdd:MTH00020 279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  98 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 177
Cdd:MTH00020 359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLK 438

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 178 PSYFFD--DKSYFISFGMIGLLFVAVFGGSFLSWLIF--------PVPYMI-VLPWYLSFL-TFFVVIVGSYLGYLISDF 245
Cdd:MTH00020 439 KAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppIVPLSIkLLPVFLSLGgIGLVIILYFYSSKTFRVP 518

                        250
                 ....*....|..
gi 406044698 246 DYFYGLFSLNFL 257
Cdd:MTH00020 519 FSFIGRNSYTFL 530
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
15-173 1.62e-31

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 123.60  E-value: 1.62e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  15 FLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSD--- 91
Cdd:PRK07376 293 VIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvg 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  92 -----SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLYFISTGLTASYSFRLF 166
Cdd:PRK07376 373 hdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMY 450


                 ....*..
gi 406044698 167 YYSMMGD 173
Cdd:PRK07376 451 FLTFEGE 457
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 161-296 4.40e-29

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 109.18  E-value: 4.40e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  161 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTFFVVIVGSYLGY 240
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 406044698  241 LISDFDYFYGLFSLNFlSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSKSLNYGW 296
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGW 135
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-154 6.46e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.63  E-value: 6.46e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698    1 IRFSPMLLT*NYGW--FLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFK 75
Cdd:pfam00361 133 IRRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFS 212

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 406044698   76 ALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFIS 154
Cdd:pfam00361 213 AGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 18-191 2.24e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 108.83  E-value: 2.24e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  18 LVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNL-------- 89
Cdd:CHL00025 296 LIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgysp 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  90 SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVvclSWVNFLIF-FLYFISTGLTASYSFRLFYY 168
Cdd:CHL00025 376 DKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFaIIAWSTAGLTAFYMFRIYLL 452

                        170       180
                 ....*....|....*....|....*.
gi 406044698 169 SMMGD---NNFYPSYFFDDKSYFISF 191
Cdd:CHL00025 453 TFEGHlrvHFQNYSGKKNSSFYSISL 478
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 3-168 1.56e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 96.37  E-value: 1.56e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   3 FSPMLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLF 79
Cdd:COG0651  262 LFGADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtPLGLagALFHLLNHALAKALLF 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  80 MCAGSMIHNLsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTA 159
Cdd:COG0651  342 LAAGAIERAT-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTL 419


                 ....*....
gi 406044698 160 SYSFRLFYY 168
Cdd:COG0651  420 AYFVRIFGR 428
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 18-299 3.56e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 96.57  E-value: 3.56e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  18 LVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSM-GYYGLAFFHLLTHALFKALLFMCAGSMIHNLS-DSQDI 95
Cdd:MTH00032 294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  96 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCL----------------------------------- 140
Cdd:MTH00032 374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipfgssllkiqgdigikkddrgsiggpegy 453

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 141 -SWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV----- 214
Cdd:MTH00032 454 pSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVGYLIQDIligdi 533

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 215 ------PYMIVLPWYLSFLTFFVVIVGSYLGYLISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFG-YN 287
Cdd:MTH00032 534 ehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAWQGDHLINKLVAIPLFSFGhWG 613

                        330
                 ....*....|..
gi 406044698 288 SSKSLNYGW*DF 299
Cdd:MTH00032 614 IYKTLDRGWLEL 625
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 2-287 8.26e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 92.29  E-value: 8.26e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   2 RFSPMLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 81
Cdd:MTH00095 216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  82 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 161
Cdd:MTH00095 296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 162 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIgllfvaVFGGSFLSWLIFpvpYMIVLPWYLSFLTFFVVIVGSYLGYL 241
Cdd:MTH00095 376 SYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV------FFSVFFLWWLNF---NLLNLPSLFLYLDFYVPLFYLFMIML 446

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 406044698 242 ISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYN 287
Cdd:MTH00095 447 FSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYK 492
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-172 1.58e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 85.32  E-value: 1.58e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  11 NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLG---LMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIH 87
Cdd:PRK08375 269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  88 NlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEVVCLSWVNFLIFFLyfISTGLTASYSFRLF 166
Cdd:PRK08375 349 T-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                 ....*.
gi 406044698 167 YYSMMG 172
Cdd:PRK08375 426 YRAFFG 431
PRK12650 PRK12650
DUF4040 family protein;
1-136 6.73e-18

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 83.94  E-value: 6.73e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLL-T*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFKA 76
Cdd:PRK12650 259 LRFSPVFHdVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpfaLTAAVVHTLAHALFKS 338

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  77 LLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK12650 339 SLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK12646 PRK12646
DUF4040 family protein;
2-136 7.83e-17

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 80.57  E-value: 7.83e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   2 RFSPML-LT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMG-------------YYGL---- 63
Cdd:PRK12646 262 RFTPLLgLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfa 341

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 406044698  64 AFFHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK12646 342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 2-172 1.59e-16

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 79.58  E-value: 1.59e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   2 RFSPmLLT*NYGWFLL--LVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMG------------YYGLAF-- 65
Cdd:PRK12645 262 RFTP-IFAGSQVWFWTvtLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAIta 340

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  66 --FHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVC---- 139
Cdd:PRK12645 341 aiFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLnate 419

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 406044698 140 -----LSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG 172
Cdd:PRK12645 420 anlfsLDTWGVLFPVIAWVASVFTFVYSIIFIFKTFFG 457
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 16-167 1.30e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 76.93  E-value: 1.30e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  16 LLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNlSDS 92
Cdd:PRK12667 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTqLGLaaALFHIINHAIAKSLLFLASGVFIHA-AGT 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 406044698  93 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLY-FISTGLTASYSFRLFY 167
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASAISLVGYFRAWY 450
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-164 1.64e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 76.77  E-value: 1.64e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  14 WFLL--LVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHN 88
Cdd:PRK12648 270 WFWIvgGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSpLAAvaAIFHIINHATFKASLFMAAGIIDHE 349

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  89 lSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEVVCLSWVNFLIFFLYFISTGLTASYSFR 164
Cdd:PRK12648 350 -TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-167 3.26e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 73.03  E-value: 3.26e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  14 WFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMG-----YYGLAFfhLLTHALFKALLFMCAGSMIHN 88
Cdd:PRK12644 268 PTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGtrdaaLAGLAM--LLAHALFKAALFLVVGIIDHS 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  89 lSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV----CLSWVNFLIFFLYFISTGLTASYSFR 164
Cdd:PRK12644 346 -TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLR 424


                 ...
gi 406044698 165 LFY 167
Cdd:PRK12644 425 FLW 427
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-136 3.41e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 72.94  E-value: 3.41e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  14 WFLLL--VGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYY-------GLAFFHLLTHALFKALLFMCAGS 84
Cdd:PRK12649 277 WFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYhepglgvAAATFHLLNHATFKACLFLVAGI 356

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 406044698  85 MIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK12649 357 VAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-172 5.93e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 71.67  E-value: 5.93e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   3 FSPMLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGL---------------AFFH 67
Cdd:PRK08376 277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  68 LLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLswVNFLI 147
Cdd:PRK08376 357 IVNHALYKALLFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                        170       180
                 ....*....|....*....|....*
gi 406044698 148 FFLYFISTGLTASYSFRLFYYSMMG 172
Cdd:PRK08376 434 GVIAMIGSVLTLASFVKVFHTAFFG 458
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 15-130 6.25e-14

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 71.86  E-value: 6.25e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  15 FLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNlSDSQD 94
Cdd:PRK07390 286 VLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQD 364

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 406044698  95 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 130
Cdd:PRK07390 365 LTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 2-138 1.57e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 70.72  E-value: 1.57e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   2 RFSPML-LT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKAL 77
Cdd:PRK12647 247 RLNPVLgGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGA 326

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 406044698  78 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV 138
Cdd:PRK12647 327 LFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAL 386
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 14-165 2.93e-13

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 69.80  E-value: 2.93e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  14 WFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKALLFMCAGSMIHNLS 90
Cdd:PRK08377 274 KLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLG 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 406044698  91 DSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeVVCLSWVNFLIFFLYFISTGLTASYSFRL 165
Cdd:PRK08377 354 GTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 12-136 4.21e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 66.29  E-value: 4.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  12 YGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSM----GYYGL----------AFFHLLTHALFKAL 77
Cdd:PRK08667 269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifGVYGLdtlallalggALFHSLNHALFKSL 348

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 406044698  78 LFMCAGSMIHNLSDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 12-128 1.26e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 64.85  E-value: 1.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  12 YGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLA--------------FFHLLTHALFKAL 77
Cdd:PRK08042 244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 406044698  78 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 128
Cdd:PRK08042 324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-201 1.59e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 64.45  E-value: 1.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  13 GWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMM---SILSMGYYGLAFFHLLTHALFKALLFMCAGSmIHNL 89
Cdd:PRK06589 280 FNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSL 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  90 SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS---WVNFLIFFLYFISTGLTASYSFRLF 166
Cdd:PRK06589 359 KKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKIL 438

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 406044698 167 YysmmgdNNFYPSYffdDKSYFISFGMIGLLFVAV 201
Cdd:PRK06589 439 S------SIYKPSL---SENSFITKSLPYLMQISV 464
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 13-167 2.18e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.25  E-value: 2.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  13 GWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLG-LMMSILSMGYYGLA--FFHLLTHALFKALLFMCAGSMIHNL 89
Cdd:PRK08668 272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGyILVGLGLGTSLGFAggLFHVFNHALFKGLFFLIFAAVIYRT 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 406044698  90 SDSQdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFY 167
Cdd:PRK08668 352 GTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-172 5.94e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.79  E-value: 5.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLL---T*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALF 74
Cdd:COG1008  260 LRFALPLFpeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLI 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  75 KALLFMCAGsMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFIS 154
Cdd:COG1008  340 TAALFLLVG-VLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALG 416

                        170
                 ....*....|....*...
gi 406044698 155 TGLTASYSFRLFYYSMMG 172
Cdd:COG1008  417 LILTAAYLLWMYQRVFFG 434
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 13-141 8.66e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 62.21  E-value: 8.66e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  13 GWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMsiLSMGY------YGL----------AFFHLLTHALFKA 76
Cdd:PRK06521 276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIF--VGLGLamvfiaYGMpllaalaltaALYHLLNHALFKS 353

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 406044698  77 LLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLS 141
Cdd:PRK06521 354 LLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-136 2.75e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 60.74  E-value: 2.75e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  18 LVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGyyglAFFHLlTHALFKALLFMCAGSmIHNLSDSQDIRF 97
Cdd:PRK07234 250 IFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGA-LPSRNFTELISQ 323

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 406044698  98 MGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK07234 324 MLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 2-244 3.08e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 60.66  E-value: 3.08e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   2 RFSPMLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 81
Cdd:MTH00063 209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  82 AGSMIHNLSDSQDIR-----FMGSIVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTG 156
Cdd:MTH00063 289 VGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVF 363

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698 157 LTASYSFRLFYYSMMGDNNFYPSYFFDdksYFISFGMigllfvaVFGGSFLSWLIFP-VPYMIVLPWYLSFLTFFVVIVG 235
Cdd:MTH00063 364 LSYLYSFRLCLILFGVKSSLSSGVRFL---FFNSGLM-------VFLWLFINYYVFLlLDEVVYLGVFISLVLLLVQLLG 433


                 ....*....
gi 406044698 236 SYLGYLISD 244
Cdd:MTH00063 434 LLVGVLFYD 442
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 13-135 4.74e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 59.99  E-value: 4.74e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  13 GWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGL------AFFHLLTHALFKALLFMCAGSMI 86
Cdd:PRK06525 272 GYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlalegSIAYIFNHAFAKSLFFLVAGALS 351

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 406044698  87 HNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 135
Cdd:PRK06525 352 YSCG-TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
22-135 5.12e-10

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 59.91  E-value: 5.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  22 MTVFMAGLGANF---EFD*KSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNLSDSqDI 95
Cdd:PRK12668 246 IGAAMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIGTaLAIngAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KL 324

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 406044698  96 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 135
Cdd:PRK12668 325 TELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-84 7.85e-10

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 59.33  E-value: 7.85e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   1 IRFSPMLLT*NYG-WFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLF 79
Cdd:PRK08168 250 IRFAPLLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAF 329


                 ....*
gi 406044698  80 MCAGS 84
Cdd:PRK08168 330 LSASE 334
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-178 1.15e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 58.81  E-value: 1.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  15 FLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHnLSD 91
Cdd:PRK07691 277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  92 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMM 171
Cdd:PRK07691 356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGT-FEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFW 434


                 ....*..
gi 406044698 172 GDNNFYP 178
Cdd:PRK07691 435 GEPKGYD 441
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 14-173 2.90e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 54.44  E-value: 2.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  14 WFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLS 90
Cdd:PRK05846 278 PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH 357

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  91 dSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSM 170
Cdd:PRK05846 358 -TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVM 434


                 ...
gi 406044698 171 MGD 173
Cdd:PRK05846 435 FGP 437
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-138 8.61e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 50.12  E-value: 8.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   6 MLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCA 82
Cdd:PRK12662 272 VFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVS 351

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 406044698  83 GSMIHNLsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVV 138
Cdd:PRK12662 352 GSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 2-84 9.77e-06

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 46.57  E-value: 9.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   2 RFSPmLLT*NYGWFLLLVGCMTVFMAGLGANF-EFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 80
Cdd:PRK08601 255 RFSP-LFHDDIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                 ....
gi 406044698  81 CAGS 84
Cdd:PRK08601 334 QSGS 337
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
16-175 6.06e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.17  E-value: 6.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  16 LLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKALLFMCAGSMIHnLSDS 92
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  93 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFIsTGLTASYS-FRLFYYSMM 171
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGA-LDNGAYILLALMLI-TSLITMYSlFRIFFLAYW 431


                 ....
gi 406044698 172 GDNN 175
Cdd:PRK12663 432 GDKD 435
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-136 1.52e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.03  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  15 FLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFKALLFMCAGsMIHNLSD 91
Cdd:PRK12665 275 LLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAG 353

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 406044698  92 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 136
Cdd:PRK12665 354 SSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 16-135 1.94e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 42.61  E-value: 1.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  16 LLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYyGLAFF----HLLTHALFKALLFMCAGSMIHNlSD 91
Cdd:PRK06458 284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGG-PLGIFaallHMLNHSLTKSAIFFASGNVLQK-YG 361

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 406044698  92 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 135
Cdd:PRK06458 362 TRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 16-212 3.87e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 41.64  E-value: 3.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  16 LLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGY-----YGLAFFHLLTHALFKALLFMCAGSMIhNLS 90
Cdd:PRK12664 204 LLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGssgvaIGILILQIVLSVVYQTLLFMVADSVI-NRT 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  91 DSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYF--ISTGLTASYSFRLFYY 168
Cdd:PRK12664 283 RKFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLFASVGLKFFWY 361

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 406044698 169 SMMGDNNFYPSYffdDKSYFIS-FGMIGLLFVAVFGGSFLSWLIF 212
Cdd:PRK12664 362 AFISKSKSKPEA---EKVYIGSkLSMIILVLICVVLGMFNSYLLF 403
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 16-166 9.45e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.51  E-value: 9.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  16 LLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAF---FHLLTHALFKALLFMCAGsMIHNLSDS 92
Cdd:PRK08676 276 LIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRS 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 406044698  93 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EVVCLS-WVNFLIFFLYFISTGLTASYSFRLF 166
Cdd:PRK08676 355 DRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 6-212 1.99e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 39.42  E-value: 1.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698   6 MLLT*NYGWFLLLVGCMTVFMAGLGANFEFD*KSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSM 85
Cdd:MTH00160 136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  86 IHNLSDSQDIRFMGSIVNFMpltsvcFNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLyFISTGLTASYSFRL 165
Cdd:MTH00160 216 IFFLNQLFNSNNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL-IMSSLITLYFYLRI 288

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 406044698 166 FYYSMMGdNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIF 212
Cdd:MTH00160 289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 36-131 2.50e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 39.33  E-value: 2.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 406044698  36 D*KSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCF 112
Cdd:COG1007  292 NVKRMLAYSSIAHAGyLLLGLAAGTPLGVsaALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAM 371

                         90
                 ....*....|....*....
gi 406044698 113 NVSSLSLCGMPFLAGFYSK 131
Cdd:COG1007  372 TIFLLSLAGIPPTAGFFGK 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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