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Conserved domains on  [gi|403531482|ref|YP_006665867|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Tetrix japonica]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-164 6.54e-33

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 114.13  E-value: 6.54e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482   1 MKMIITMSTMLSMMFMNMKQPMQMIIIILMQTLFTVYMMSMKTKSSWFTYMLLIIFIGGMMVLFIYITSITPNEQNKSNM 80
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482  81 SIIIMMTILISTIMLMMkntkINNNETTNMDTMNMLKTEQLMLNKIFNMPMYMLTIMMMIYLFIALIAVNKISNMKKGPL 160
Cdd:MTH00166  81 KLLILFLLMLLLMLNNF----IKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPL 156


                 ....
gi 403531482 161 RKMS 164
Cdd:MTH00166 157 RSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-164 6.54e-33

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 114.13  E-value: 6.54e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482   1 MKMIITMSTMLSMMFMNMKQPMQMIIIILMQTLFTVYMMSMKTKSSWFTYMLLIIFIGGMMVLFIYITSITPNEQNKSNM 80
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482  81 SIIIMMTILISTIMLMMkntkINNNETTNMDTMNMLKTEQLMLNKIFNMPMYMLTIMMMIYLFIALIAVNKISNMKKGPL 160
Cdd:MTH00166  81 KLLILFLLMLLLMLNNF----IKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPL 156


                 ....
gi 403531482 161 RKMS 164
Cdd:MTH00166 157 RSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-164 6.54e-33

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 114.13  E-value: 6.54e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482   1 MKMIITMSTMLSMMFMNMKQPMQMIIIILMQTLFTVYMMSMKTKSSWFTYMLLIIFIGGMMVLFIYITSITPNEQNKSNM 80
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482  81 SIIIMMTILISTIMLMMkntkINNNETTNMDTMNMLKTEQLMLNKIFNMPMYMLTIMMMIYLFIALIAVNKISNMKKGPL 160
Cdd:MTH00166  81 KLLILFLLMLLLMLNNF----IKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPL 156


                 ....
gi 403531482 161 RKMS 164
Cdd:MTH00166 157 RSKN 160
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-161 3.17e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 52.97  E-value: 3.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482   1 MKMIITMSTMLSMMFMNMKQPMQMIIIILMQTLFTVYMMSMkTKSSWFTYMLLIIFIGGMMVLFIYITSITPNEQNKSNM 80
Cdd:MTH00152   3 LMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGL-TLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482  81 SIIIMMTILISTIMLMMKNTKINNNETTNMDTMNMLKTEQLMLNKIFNMP-MYMLTIMMMIYLFIALIAVNKISNMKKGP 159
Cdd:MTH00152  82 KFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSsGWSIFVFLAVLLLIVMVSVVKICYYEEGS 161


                 ..
gi 403531482 160 LR 161
Cdd:MTH00152 162 LR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-162 3.16e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 50.00  E-value: 3.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482   1 MKMIITMSTMLSMMFM--NMKQPMQMIIIILMQTLFTVYMMSMKTkSSWFTYMLLIIFIGGMMVLFIYITSITPNEQNKS 78
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLfpLSAHPLTLGVSLLLSSLLSCLIITMES-NSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482  79 NMSIIIMMTILISTIMLMMKNTkinnNETTNMDTMNMLKTEqLMLNKIFNMPMYMLTIMMMIYLFIALIAVNKISNMKKG 158
Cdd:MTH00212  80 KKYFKGFGMILISLNLYLLLMT----LGSSNFSPMLNLKLE-LNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKG 154


                 ....
gi 403531482 159 PLRK 162
Cdd:MTH00212 155 PLRP 158
ND6 MTH00015
NADH dehydrogenase subunit 6; Validated
 1-164 5.00e-03

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 164590  Cd Length: 155  Bit Score: 35.60  E-value: 5.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482   1 MKMIITMSTMLSMMFMNMKQPMQMIIIILMQTLFTVYMMSMKTkSSWFTYMLLIIFIGGMMVLFIYITSITPNEQ-NKSN 79
Cdd:MTH00015   3 LSFFLILMISLTCSLFLATTPITLGINILMMALLLATTMASAL-SSWFAFLTFLIYVGGMLVMFAYFLALTPNQQlNLGP 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482  80 MSIIIMMTILISTIMLMMKNTKINNNETTNMDTMNMLKTEQLmlnkifnmpmyMLTIMMMIYLFIALIAVNKISNMKKGP 159
Cdd:MTH00015  82 MAKYTLITLLTLSTTLKLTNPPSPSFFSSTQGNTFLYQPENA-----------PLLIFLALILLLTMVIVVKLTRRSSGP 150


                 ....*
gi 403531482 160 LRKMS 164
Cdd:MTH00015 151 LRPFK 155
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 45-153 6.30e-03

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 35.27  E-value: 6.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531482  45 SSWFTYMLLIIFIGGMMVLFIYITSITPNE-QNKSNMSIIIMMTILISTIMLMMkntkINNNETTNMDTMNMLKTEQLML 123
Cdd:MTH00045  46 LSFLALLLLLIYMGGMLVVFVYSSALSAERyPSVSNLGEVLVLSLLLSLWVFIS----FDNFLELSNNNWSLVSLSDLVG 121

                         90       100       110
                 ....*....|....*....|....*....|
gi 403531482 124 NKIFNMPMYMLTIMMMIYLFIALIAVNKIS 153
Cdd:MTH00045 122 SSELYNSGGLYLLLGGFILLVALVVALVIS 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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