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Conserved domains on  [gi|403531445|ref|YP_006665855|]
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cytochrome b (mitochondrion) [Alulatettix yunnanensis]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 659.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  12 IKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  92 FICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 172 DNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLISLMYPYIM 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 252 GDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQIMFWIMVT 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 403531445 332 TVILLTWVGKQPVEEPYITTGQILTMMYFTFFMMN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 659.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  12 IKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  92 FICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 172 DNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLISLMYPYIM 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 252 GDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQIMFWIMVT 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 403531445 332 TVILLTWVGKQPVEEPYITTGQILTMMYFTFFMMN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-363 6.56e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 347.55  E-value: 6.56e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  12 IKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  92 FICLYLHVGRGLYYNSFllKE----TWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWG 167
Cdd:COG1290  100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 168 GFAVDNPTLSRFFSLH-FILPFVIAALTMIHLLFLHQSGSNNPLG----MNSNSEKIPFHPFFSIKDSITMLLLLMVLML 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 243 ISLMYPyiMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAITLIMPFYNKANFQGNQFYP 320
Cdd:COG1290  258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 403531445 321 INQIMFWIMVTTVILLTWVGKQPveEPYITTGQILTMMYFTFF 363
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFF 376
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.86e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 272.32  E-value: 2.86e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  10 PLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  90 MFFICLYLHVGRGLYYNSF--LLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 403531445 168 GFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 3.22e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.84  E-value: 3.22e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   19 LMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   99 VGRGLYYNSF--LLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 403531445  177 SRFFSLHFILPFVIAALTMIHLLFLHQSG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 2.43e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.57  E-value: 2.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  259 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKAN-FQGNQFYPINQIMFwiMVTTVILLt 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNkFQNPFRRPVATTVF--LFGTVVAL- 141


                  ...
gi 403531445  338 WVG 340
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 659.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  12 IKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  92 FICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 172 DNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLISLMYPYIM 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 252 GDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQIMFWIMVT 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 403531445 332 TVILLTWVGKQPVEEPYITTGQILTMMYFTFFMMN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 613.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   1 MKNPLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLI 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  81 RTLHMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQ 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 161 IVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 241 MLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 403531445 321 INQIMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFMMNTSINKMWDQTIM 378
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILD 378
CYTB MTH00119
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 606.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   1 MKNPLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  81 RTLHMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQ 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 161 IVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 241 MLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 403531445 321 INQIMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFMM 365
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 599.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   5 LRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  85 MNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 165 IWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLIS 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 245 LMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 403531445 325 MFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFMM 365
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 4-361 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 593.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   4 PLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTL 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  84 HMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQ 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 164 WIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLI 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 244 SLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 403531445 324 IMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFT 361
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00131
cytochrome b; Provisional
 5-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 591.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   5 LRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLH 84
Cdd:MTH00131   4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  85 MNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQW 164
Cdd:MTH00131  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 165 IWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLIS 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 245 LMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQI 324
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 403531445 325 MFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFM 364
Cdd:MTH00131 324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 589.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   1 MKNPLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  81 RTLHMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQ 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 161 IVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 241 MLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 403531445 321 INQIMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFMMNTSINKMWDQTIM 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00074
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 585.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   1 MKNPLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  81 RTLHMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQ 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 161 IVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 241 MLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 403531445 321 INQIMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFMMNTSINKMWDQTIM 378
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLL 378
CYTB MTH00034
cytochrome b; Validated
 3-364 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 567.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   3 NPLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRT 82
Cdd:MTH00034   2 GPLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  83 LHMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIV 162
Cdd:MTH00034  82 IHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 163 QWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLML 242
Cdd:MTH00034 162 QWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 243 ISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPIN 322
Cdd:MTH00034 242 LALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLS 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 403531445 323 QIMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFM 364
Cdd:MTH00034 322 QIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
CYTB MTH00224
cytochrome b; Provisional
 1-377 1.14e-180

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 506.38  E-value: 1.14e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   1 MKNPLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  81 RTLHMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQ 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 161 IVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 241 MLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 403531445 321 INQIMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFMMNTSINKMWDQTI 377
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 4-365 1.44e-174

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 490.75  E-value: 1.44e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   4 PLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTL 83
Cdd:MTH00022   2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  84 HMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQ 163
Cdd:MTH00022  82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 164 WIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLI 243
Cdd:MTH00022 162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 244 SLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQ 323
Cdd:MTH00022 242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 403531445 324 IMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFMM 365
Cdd:MTH00022 322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-369 3.95e-170

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 479.59  E-value: 3.95e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   1 MKNPLRKNHPLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  81 RTLHMNGASMFFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQ 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 161 IVQWIWGGFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 241 MLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 403531445 321 INQIMFWIMVTTVILLTWVGKQPVEEPYITTGQILTMMYFTFFMMNTSI 369
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPL 369
CYTB MTH00033
cytochrome b; Provisional
 17-365 8.04e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 380.05  E-value: 8.04e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  17 NSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMFFICLY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  97 LHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 177 SRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDsITMLLLLMVLMLISLMYPYI---MGD 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKD-ILGFLILFGVFVIIGIEPRIetlLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 254 PDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQIMFWIMVTTV 333
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350
                 ....*....|....*....|....*....|...
gi 403531445 334 ILLTWVGKQPV-EEPYITTGQILTMMYFTFFMM 365
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 13-365 1.72e-126

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 367.73  E-value: 1.72e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  13 KIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  93 ICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 173 NPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSITmLLLLMVLMLISLMYPYIMG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 253 DPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYnkaNFQGNQFYPINQIMFWIMVTT 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 403531445 333 VILLTWVGKQPVEEPYITTGQILTMMYFTFFMM 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-363 6.56e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 347.55  E-value: 6.56e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  12 IKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  92 FICLYLHVGRGLYYNSFllKE----TWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWG 167
Cdd:COG1290  100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 168 GFAVDNPTLSRFFSLH-FILPFVIAALTMIHLLFLHQSGSNNPLG----MNSNSEKIPFHPFFSIKDSITMLLLLMVLML 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 243 ISLMYPyiMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAITLIMPFYNKANFQGNQFYP 320
Cdd:COG1290  258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 403531445 321 INQIMFWIMVTTVILLTWVGKQPveEPYITTGQILTMMYFTFF 363
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFF 376
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.86e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 272.32  E-value: 2.86e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  10 PLIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  90 MFFICLYLHVGRGLYYNSF--LLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 403531445 168 GFAVDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-365 5.48e-88

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 269.55  E-value: 5.48e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  11 LIKIINNSLMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASM 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  91 FFICLYLHVGRGLYYNSFLLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFA 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 171 VDNPTLSRFFSLHFILPFVIAALTMIHLLFLHQSGSNNPL-GMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLISLMYPY 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLfSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 250 IMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIaLVMSIAITLIMPfynkaNFQGNQFYPI-NQIMFWI 328
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVP-----TFNGSSVYSVwRQVNFWL 314

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 403531445 329 MVTTVILLTWVGKQPVEEPYITTGQILTMMyFTFFMM 365
Cdd:MTH00046 315 IVSLFFSLSYLGGCHPEYPYLLISQLFSVL-MVLLLF 350
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 3.22e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.84  E-value: 3.22e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   19 LMDLPTPMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   99 VGRGLYYNSF--LLKETWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 403531445  177 SRFFSLHFILPFVIAALTMIHLLFLHQSG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 5.49e-46

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 154.34  E-value: 5.49e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 208 NPLGMNSNSEKIPFHPFFSIKDSITMLLLLMVLMLISLMYPYIMGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 403531445 288 KLGGVIALVMSIAITLIMPFYNKANFQgNQFYPINQIMFWIMVTTVILLTWVGKQPVEEPYITTGQI 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 3.48e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.00  E-value: 3.48e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  259 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQFYPINQIMFWIMVTTVILLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 403531445  339 VGKQPVEEPYITTGQILTMMY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 1.48e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 140.23  E-value: 1.48e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  34 FGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMFFICLYLHVGRGLYYNSFLLKE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 113 -TWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFSLH-FILPFVI 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 403531445 191 AALTMIHLLFLHQSGSNNPL 210
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-231 2.51e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 137.76  E-value: 2.51e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445   89 SMFFICLYLHVGRGLYYNSFLLKE--TWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 403531445  167 GGFAVDNPTLSRFFSLHF-ILPFVIAALTMIHLLFLHQSGSNNPLGMNSNSEKIPFHPFFSIKDSI 231
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLL 146
petB CHL00070
cytochrome b6
 25-210 1.08e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.45  E-value: 1.08e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  25 PMNISMWWNFGSLLGMCLMIQIITGLFLAMHYTADIEMAFKSVIHICRDVNNGWLIRTLHMNGASMFFICLYLHVGRgLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR-VY 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 105 YNSFLLKE---TWTVGVIILFMTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYMGNQIVQWIWGGFAVDNPTLSRFFS 181
Cdd:CHL00070 106 LTGGFKKPrelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185

                        170       180       190
                 ....*....|....*....|....*....|
gi 403531445 182 LH-FILPFVIAALTMIHLLFLHQSGSNNPL 210
Cdd:CHL00070 186 LHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 248-336 2.93e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.47  E-value: 2.93e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 248 PYIMGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKANFQGNQF-YPINQIMF 326
Cdd:CHL00058  59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVF 133

                         90
                 ....*....|
gi 403531445 327 WIMVTTVILL 336
Cdd:CHL00058 134 LIGTAVALWL 143
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 248-340 1.81e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 55.96  E-value: 1.81e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445 248 PYIMGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVmSIAITLIM-PFYNKAN-FQGNQFYPINQIM 325
Cdd:COG5679   60 PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMA-AIPLGLMLvPFIENVNkFQNPFRRPVATAV 133

                         90
                 ....*....|....*
gi 403531445 326 FwiMVTTVILLtWVG 340
Cdd:COG5679  134 F--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 2.43e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.57  E-value: 2.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 403531445  259 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAITLIMPFYNKAN-FQGNQFYPINQIMFwiMVTTVILLt 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNkFQNPFRRPVATTVF--LFGTVVAL- 141


                  ...
gi 403531445  338 WVG 340
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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