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Conserved domains on  [gi|402086083|gb|EJT80981|]
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hypothetical protein GGTG_00971 [Gaeumannomyces tritici R3-111a-1]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 1000017)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
PubMed:  10322433|8090199|30069656|29026209
SCOP:  4002744

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
WD40 super family cl29593
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 110-338 3.72e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


The actual alignment was detected with superfamily member cd00200:

Pssm-ID: 475233 [Multi-domain]  Cd Length: 289  Bit Score: 50.80  E-value: 3.72e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 110 ASIASLACAPGVNVVCAGTEhvDNQASLvfWDVrrASEPVIQYNEVHSDDITELNFHPtDTNLLLSGSTDGLVNVYDLki 189
Cdd:cd00200   10 GGVTCVAFSPDGKLLATGSG--DGTIKV--WDL--ETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDL-- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 190 tdEDEVVIQTFN-HDASIHHSGFLNQSELFALSH-DEKFALYDLAEEQEKGSATANFGDTRetlgcqyianvlpkSVADG 267
Cdd:cd00200   81 --ETGECVRTLTgHTSYVSSVAFSPDGRILSSSSrDKTIKVWDVETGKCLTTLRGHTDWVN--------------SVAFS 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 402086083 268 PAAAVIGAGTLDQQkfelVHLskgaasWGFDSSSLVGLPGAHgSEVVRSFRVLDRERVVLTAGEDGQIKTW 338
Cdd:cd00200  145 PDGTFVASSSQDGT----IKL------WDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 110-338 3.72e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 50.80  E-value: 3.72e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 110 ASIASLACAPGVNVVCAGTEhvDNQASLvfWDVrrASEPVIQYNEVHSDDITELNFHPtDTNLLLSGSTDGLVNVYDLki 189
Cdd:cd00200   10 GGVTCVAFSPDGKLLATGSG--DGTIKV--WDL--ETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDL-- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 190 tdEDEVVIQTFN-HDASIHHSGFLNQSELFALSH-DEKFALYDLAEEQEKGSATANFGDTRetlgcqyianvlpkSVADG 267
Cdd:cd00200   81 --ETGECVRTLTgHTSYVSSVAFSPDGRILSSSSrDKTIKVWDVETGKCLTTLRGHTDWVN--------------SVAFS 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 402086083 268 PAAAVIGAGTLDQQkfelVHLskgaasWGFDSSSLVGLPGAHgSEVVRSFRVLDRERVVLTAGEDGQIKTW 338
Cdd:cd00200  145 PDGTFVASSSQDGT----IKL------WDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
WD40 COG2319
WD40 repeat [General function prediction only];
79-342 2.75e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 48.75  E-value: 2.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083  79 TAGSDGSVAIWDLRAagvnpAQATRQIGSVHASIASLACAP-GVNVVCAGTehvDNQASLvfWDVrrASEPVIQYNEVHS 157
Cdd:COG2319  179 SGSDDGTVRLWDLAT-----GKLLRTLTGHTGAVRSVAFSPdGKLLASGSA---DGTVRL--WDL--ATGKLLRTLTGHS 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 158 DDITELNFHPtDTNLLLSGSTDGLVNVYDLkitdEDEVVIQTFNHDASIHHS-GFLNQSELFAL-SHDEKFALYDLAEEQ 235
Cdd:COG2319  247 GSVRSVAFSP-DGRLLASGSADGTVRLWDL----ATGELLRTLTGHSGGVNSvAFSPDGKLLASgSDDGTVRLWDLATGK 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 236 EKGSATANFGDTRetlgcqyianvlpkSVADGPAAAVIGAGTLDQQkfelVHLskgaasWGFDSSSLVGLPGAHGSEvVR 315
Cdd:COG2319  322 LLRTLTGHTGAVR--------------SVAFSPDGKTLASGSDDGT----VRL------WDLATGELLRTLTGHTGA-VT 376

                        250       260
                 ....*....|....*....|....*..
gi 402086083 316 SFRVLDRERVVLTAGEDGQIKTWGAQG 342
Cdd:COG2319  377 SVAFSPDGRTLASGSADGTVRLWDLAT 403
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 156-186 2.61e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 35.37  E-value: 2.61e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 402086083   156 HSDDITELNFHPtDTNLLLSGSTDGLVNVYD 186
Cdd:smart00320  11 HTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
156-186 3.97e-03

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 34.63  E-value: 3.97e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 402086083  156 HSDDITELNFHPtDTNLLLSGSTDGLVNVYD 186
Cdd:pfam00400  10 HTGSVTSLAFSP-DGKLLASGSDDGTVKVWD 39
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 110-338 3.72e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 50.80  E-value: 3.72e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 110 ASIASLACAPGVNVVCAGTEhvDNQASLvfWDVrrASEPVIQYNEVHSDDITELNFHPtDTNLLLSGSTDGLVNVYDLki 189
Cdd:cd00200   10 GGVTCVAFSPDGKLLATGSG--DGTIKV--WDL--ETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDL-- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 190 tdEDEVVIQTFN-HDASIHHSGFLNQSELFALSH-DEKFALYDLAEEQEKGSATANFGDTRetlgcqyianvlpkSVADG 267
Cdd:cd00200   81 --ETGECVRTLTgHTSYVSSVAFSPDGRILSSSSrDKTIKVWDVETGKCLTTLRGHTDWVN--------------SVAFS 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 402086083 268 PAAAVIGAGTLDQQkfelVHLskgaasWGFDSSSLVGLPGAHgSEVVRSFRVLDRERVVLTAGEDGQIKTW 338
Cdd:cd00200  145 PDGTFVASSSQDGT----IKL------WDLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 51-230 5.81e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 50.41  E-value: 5.81e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083  51 KGPVRSFKTSHGNLTVArpfdlsqsavcTAGSDGSVAIWDLRAAGVNpAQATRQIGSVHasiaSLACAPGVNVVCAGTEh 130
Cdd:cd00200  135 TDWVNSVAFSPDGTFVA-----------SSSQDGTIKLWDLRTGKCV-ATLTGHTGEVN----SVAFSPDGEKLLSSSS- 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 131 vDNQASLvfWDVRraSEPVIQYNEVHSDDITELNFHPtDTNLLLSGSTDGLVNVYDLkitdEDEVVIQTF-NHDASIHHS 209
Cdd:cd00200  198 -DGTIKL--WDLS--TGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDL----RTGECVQTLsGHTNSVTSL 267

                        170       180
                 ....*....|....*....|..
gi 402086083 210 GFLNQ-SELFALSHDEKFALYD 230
Cdd:cd00200  268 AWSPDgKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
79-342 2.75e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 48.75  E-value: 2.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083  79 TAGSDGSVAIWDLRAagvnpAQATRQIGSVHASIASLACAP-GVNVVCAGTehvDNQASLvfWDVrrASEPVIQYNEVHS 157
Cdd:COG2319  179 SGSDDGTVRLWDLAT-----GKLLRTLTGHTGAVRSVAFSPdGKLLASGSA---DGTVRL--WDL--ATGKLLRTLTGHS 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 158 DDITELNFHPtDTNLLLSGSTDGLVNVYDLkitdEDEVVIQTFNHDASIHHS-GFLNQSELFAL-SHDEKFALYDLAEEQ 235
Cdd:COG2319  247 GSVRSVAFSP-DGRLLASGSADGTVRLWDL----ATGELLRTLTGHSGGVNSvAFSPDGKLLASgSDDGTVRLWDLATGK 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 236 EKGSATANFGDTRetlgcqyianvlpkSVADGPAAAVIGAGTLDQQkfelVHLskgaasWGFDSSSLVGLPGAHGSEvVR 315
Cdd:COG2319  322 LLRTLTGHTGAVR--------------SVAFSPDGKTLASGSDDGT----VRL------WDLATGELLRTLTGHTGA-VT 376

                        250       260
                 ....*....|....*....|....*..
gi 402086083 316 SFRVLDRERVVLTAGEDGQIKTWGAQG 342
Cdd:COG2319  377 SVAFSPDGRTLASGSADGTVRLWDLAT 403
WD40 COG2319
WD40 repeat [General function prediction only];
30-338 5.75e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 47.60  E-value: 5.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083  30 SGLTAISSDQSLSLFDLSSLSKGPVRSFKTSHGNLTVARPFDLSQSAVCTAGSDGSVAIWDLRAagvnpAQATRQIGSVH 109
Cdd:COG2319   46 PDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLAT-----GLLLRTLTGHT 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 110 ASIASLACAP-GVNVVCAGTEHvdnqaSLVFWDVRRASEPVIQynEVHSDDITELNFHPtDTNLLLSGSTDGLVNVYDLk 188
Cdd:COG2319  121 GAVRSVAFSPdGKTLASGSADG-----TVRLWDLATGKLLRTL--TGHSGAVTSVAFSP-DGKLLASGSDDGTVRLWDL- 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 189 itdEDEVVIQTFN-HDASIHHSGFLNQSELFAL-SHDEKFALYDLAEEQEKGSATanfGDTREtlgcqyianvlPKSVA- 265
Cdd:COG2319  192 ---ATGKLLRTLTgHTGAVRSVAFSPDGKLLASgSADGTVRLWDLATGKLLRTLT---GHSGS-----------VRSVAf 254

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 402086083 266 --DGPAAAvigAGTLDQQkfelVHLskgaasWGFDSSSLVGLPGAHGSEvVRSFRVLDRERVVLTAGEDGQIKTW 338
Cdd:COG2319  255 spDGRLLA---SGSADGT----VRL------WDLATGELLRTLTGHSGG-VNSVAFSPDGKLLASGSDDGTVRLW 315
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 77-208 2.56e-05

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 45.40  E-value: 2.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083  77 VCTAGSDGSVAIWDLRaagvNPAQATRQIGSVHASIASLACAPGVNVVCAGTehvDNQASLvfWDVRraSEPVIQYNEVH 156
Cdd:cd00200   24 LATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRL--WDLE--TGECVRTLTGH 92

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 402086083 157 SDDITELNFHPtDTNLLLSGSTDGLVNVYDLkitdEDEVVIQTFN-HDASIHH 208
Cdd:cd00200   93 TSYVSSVAFSP-DGRILSSSSRDKTIKVWDV----ETGKCLTTLRgHTDWVNS 140
WD40 COG2319
WD40 repeat [General function prediction only];
32-342 1.76e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 39.89  E-value: 1.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083  32 LTAISSDQSLSLFDLSSLSKGPVRSFKTSHGNLTVARPFDLSQSAVCTAGSDGSVAIWDLRAAgvnpaQATRQIGSVHAS 111
Cdd:COG2319    6 GAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAG-----ALLATLLGHTAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 112 IASLACAPGVNVVCAGtehvDNQASLVFWDVRRASEPVIQYNevHSDDITELNFHPtDTNLLLSGSTDGLVNVYDLkitd 191
Cdd:COG2319   81 VLSVAFSPDGRLLASA----SADGTVRLWDLATGLLLRTLTG--HTGAVRSVAFSP-DGKTLASGSADGTVRLWDL---- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402086083 192 EDEVVIQTFN-HDASIHHSGFLNQSELFAL-SHDEKFALYDLAEeqekgsatanfGDTRETLGCQyiaNVLPKSVADGPA 269
Cdd:COG2319  150 ATGKLLRTLTgHSGAVTSVAFSPDGKLLASgSDDGTVRLWDLAT-----------GKLLRTLTGH---TGAVRSVAFSPD 215

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 402086083 270 AAVIGAGTLDQQkfelVHLskgaasWGFDSSSLVGLPGAHGSEvVRSFRVLDRERVVLTAGEDGQIKTWGAQG 342
Cdd:COG2319  216 GKLLASGSADGT----VRL------WDLATGKLLRTLTGHSGS-VRSVAFSPDGRLLASGSADGTVRLWDLAT 277
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 156-186 2.61e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 35.37  E-value: 2.61e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 402086083   156 HSDDITELNFHPtDTNLLLSGSTDGLVNVYD 186
Cdd:smart00320  11 HTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
156-186 3.97e-03

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 34.63  E-value: 3.97e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 402086083  156 HSDDITELNFHPtDTNLLLSGSTDGLVNVYD 186
Cdd:pfam00400  10 HTGSVTSLAFSP-DGKLLASGSDDGTVKVWD 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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