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Conserved domains on  [gi|401889623|gb|AFQ31088|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Sphingonotus finotianus]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-332 1.91e-126

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 373.71  E-value: 1.91e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165 232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 161 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGYL 240
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 241 VSDFDYFYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLYD 320
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                        330
                 ....*....|..
gi 401889623 321 SNFKVYLLTFIF 332
Cdd:MTH00165 552 NNLKIYLLSFLL 563
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-332 1.91e-126

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 373.71  E-value: 1.91e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165 232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 161 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGYL 240
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 241 VSDFDYFYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLYD 320
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                        330
                 ....*....|..
gi 401889623 321 SNFKVYLLTFIF 332
Cdd:MTH00165 552 NNLKIYLLSFLL 563
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 4.41e-43

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.85  E-value: 4.41e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:COG1009  263 RLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  80 CAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-IVCLSWVNFLIFFLYFISTGLTA 158
Cdd:COG1009  343 GAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 159 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLPWYLKFLTMF 229
Cdd:COG1009  422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                        250
                 ....*....|..
gi 401889623 230 VVIMGSYLGYLV 241
Cdd:COG1009  502 LSLLGIALGYLL 513
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-332 3.05e-39

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 136.91  E-value: 3.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  240 LVSDFDYFYGLFSLSFlSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLY 319
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|...
gi 401889623  320 DSNFKVYLLTFIF 332
Cdd:pfam06455 160 KGLIKIYLLSFLL 172
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-241 1.75e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 143.96  E-value: 1.75e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623    1 RFSPM-LLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:TIGR01974 265 RTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFL 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:TIGR01974 345 GAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAF 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-----------LPWYLKFLTM 228
Cdd:TIGR01974 425 YSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPT 504

                         250
                  ....*....|...
gi 401889623  229 FVVIMGSYLGYLV 241
Cdd:TIGR01974 505 AVAILGILLAYLL 517
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-332 1.91e-126

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 373.71  E-value: 1.91e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165 232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 161 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGYL 240
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 241 VSDFDYFYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLYD 320
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQN 551

                        330
                 ....*....|..
gi 401889623 321 SNFKVYLLTFIF 332
Cdd:MTH00165 552 NNLKIYLLSFLL 563
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-332 2.63e-83

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 262.47  E-value: 2.63e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:MTH00151 228 RFFPFLsSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFL 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00151 308 CAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTAL 387

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGY 239
Cdd:MTH00151 388 YSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSF 467

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 240 LVSDFDYFYGLFSLSflsfVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLY 319
Cdd:MTH00151 468 GFWDSGFSSSKMVKL----SFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWP 543

                        330
                 ....*....|...
gi 401889623 320 DSNFKVYLLTFIF 332
Cdd:MTH00151 544 VKWFNFFIGLILL 556
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-332 1.06e-82

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 261.12  E-value: 1.06e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:MTH00209 227 RFFPSLfSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFI 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00209 307 CAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAA 386

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGY 239
Cdd:MTH00209 387 YSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 240 LVSDfdyfYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLY 319
Cdd:MTH00209 467 MVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQ 542

                        330
                 ....*....|...
gi 401889623 320 DSNFKVYLLTFIF 332
Cdd:MTH00209 543 NNSLKLFVTFMML 555
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-308 6.68e-78

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 248.53  E-value: 6.68e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:MTH00207 231 RFYPFLsSTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFV 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00207 311 CAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAA 390

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGY 239
Cdd:MTH00207 391 YSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 401889623 240 LVSDFDYFYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFF 308
Cdd:MTH00207 471 LFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMF 539
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-332 2.42e-61

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 205.96  E-value: 2.42e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLLTYNY-GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:MTH00211 256 RLSPLFQNNQLiLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFM 335

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00211 336 CSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAA 415

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-LPWYLKFLTMFVVIMGSYLG 238
Cdd:MTH00211 416 YSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLG 495

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 239 YLVSdfdyfYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLS-KSFDYGWGELLGGQGLYSFFLYMIDYIQS 317
Cdd:MTH00211 496 LELV-----NLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLStHLMDLGWYEKLGPKGLGVNQKKLIKLVTS 570

                        330
                 ....*....|....*
gi 401889623 318 LYDSNFKVYLLTFIF 332
Cdd:MTH00211 571 PQQGLIKSYLALLLL 585
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 10-332 2.20e-58

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 198.66  E-value: 2.20e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  10 NYGWFL---LMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIH 86
Cdd:MTH00208 295 NSPWFLslcLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIH 374

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  87 NLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASYSFRLFY 166
Cdd:MTH00208 375 SLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIF 454

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 167 YSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPyVIVLPWYLKFLTMFVVIMGSYLGYLvsdFDY 246
Cdd:MTH00208 455 FCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFS---FLL 530

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 247 FYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLYDSNFKVY 326
Cdd:MTH00208 531 SLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQY 610


                 ....*.
gi 401889623 327 LLTFIF 332
Cdd:MTH00208 611 LLSSTL 616
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-238 3.24e-53

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 184.21  E-value: 3.24e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLLTYNYGWFL-LMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:MTH00004 261 RTHPLLQNNQTALTIcLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFL 340

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00004 341 CSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAA 420

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV-PYVIVLPWYLKFLTMFVVIMGSYLG 238
Cdd:MTH00004 421 YSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLA 500
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 16-332 9.80e-52

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 180.10  E-value: 9.80e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  16 LMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIR 95
Cdd:MTH00066 275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  96 FMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 175
Cdd:MTH00066 355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 176 YPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV-PYVIVLPWYLKFLTMFVVIMGSYLGYLVSDFDYFYGLFSLS 254
Cdd:MTH00066 435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTKM 514

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 401889623 255 FlsfvSFVGSMWFMPFLSTNYISYLPLSAGHNLSKS-FDYGWGELLGGQGLYSFFLYMIDYIQSLYDSNFKVYLLTFIF 332
Cdd:MTH00066 515 H----SFSNLLAFFPTIIHRLSPKTNLNSGQNIATHlTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLI 589
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-234 1.56e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 171.57  E-value: 1.56e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLltYNYGWFLLMIGCM----TMFMAgLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKAL 76
Cdd:MTH00108 262 RFHPLM--ENNKTIQTLTLCLgaitTLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAM 338

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  77 LFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGL 156
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 401889623 157 TASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYV-IVLPWYLKFLTMFVVIMG 234
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPqMTMPLYLKLTALAVTILG 497
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 35-177 3.17e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 162.69  E-value: 3.17e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  35 DLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVS 114
Cdd:MTH00137 302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 401889623 115 SLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYP 177
Cdd:MTH00137 382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNP 444
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 4.41e-43

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.85  E-value: 4.41e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:COG1009  263 RLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  80 CAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-IVCLSWVNFLIFFLYFISTGLTA 158
Cdd:COG1009  343 GAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 159 SYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYVIVLPWYLKFLTMF 229
Cdd:COG1009  422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                        250
                 ....*....|..
gi 401889623 230 VVIMGSYLGYLV 241
Cdd:COG1009  502 LSLLGIALGYLL 513
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 2-332 6.72e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 148.23  E-value: 6.72e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   2 FSPMLLTynygwFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCA 81
Cdd:MTH00210 270 GSPLALT-----IVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSA 344

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  82 GSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASYS 161
Cdd:MTH00210 345 GSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYS 424

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 162 FRLFYYSMMGDNNFYPSYFF--DDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGY 239
Cdd:MTH00210 425 IRLIYLTFITNTNSKKEVFIgvHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAF 504

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 240 LVSDFDYFY------GLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLS-KSFDYGWGELLGGQGLYSFFLYMI 312
Cdd:MTH00210 505 VIYNSMVFLikisrrGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGHLITyRIIDRGLLEIIGPRGISKVLIKLT 584

                        330       340
                 ....*....|....*....|
gi 401889623 313 DYIQSLYDSNFKVYLLTFIF 332
Cdd:MTH00210 585 QKISNLQSGMVFNYALIMII 604
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-332 3.05e-39

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 136.91  E-value: 3.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  240 LVSDFDYFYGLFSLSFlSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLY 319
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159

                         170
                  ....*....|...
gi 401889623  320 DSNFKVYLLTFIF 332
Cdd:pfam06455 160 KGLIKIYLLSFLL 172
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 1-241 1.75e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 143.96  E-value: 1.75e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623    1 RFSPM-LLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:TIGR01974 265 RTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFL 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   80 CAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:TIGR01974 345 GAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAF 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  160 YSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPVPYVIV-----------LPWYLKFLTM 228
Cdd:TIGR01974 425 YSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPT 504

                         250
                  ....*....|...
gi 401889623  229 FVVIMGSYLGYLV 241
Cdd:TIGR01974 505 AVAILGILLAYLL 517
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 17-319 4.61e-38

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 142.91  E-value: 4.61e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  17 MIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQDIRF 96
Cdd:MTH00020 279 IVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRK 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  97 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFY 176
Cdd:MTH00020 359 MGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLK 438

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 177 PSYFFD--DKSYFISFGMIGLLFVAVFGGSFLSWLI--FPVPYVIVLPWYLKFLTMFVVIMGSYLGYLVSDF--DYFYGL 250
Cdd:MTH00020 439 KAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSLGGIGLVIILYFYssKTFRVP 518

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 251 FSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLS-KSFDYGWGELLGGQGLYSFFLYMIDYIQSLY 319
Cdd:MTH00020 519 FSFIGRNSYTFLGSAWQFNYILNYFLIKKIWKGGHLISyRTIDKGVLELVGPKGISNFLIILTQGLSSLQ 588
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 14-240 1.69e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 141.45  E-value: 1.69e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  14 FLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLSDSQD 93
Cdd:PRK06590 283 FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQD 362

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  94 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMG-- 171
Cdd:PRK06590 363 IRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGke 441

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 172 -DNNFYPSyffdDKSYFISFGMIGLLFVAVFGG-----SFLSWLIFPVPYVIV-----LPWYLKFLTMFVVIMGSYLGYL 240
Cdd:PRK06590 442 kEKIHHPH----ESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLPVWVALLPLVVALAGIALAWL 517
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
18-172 2.78e-31

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 123.98  E-value: 2.78e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  18 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNLSD------- 90
Cdd:PRK07376 297 TGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpv 376

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  91 -SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSwvNFLIFFLYFISTGLTASYSFRLFYYSM 169
Cdd:PRK07376 377 lAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLTF 454


                 ...
gi 401889623 170 MGD 172
Cdd:PRK07376 455 EGE 457
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 17-331 1.52e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 113.13  E-value: 1.52e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  17 MIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYSGLAFFHLLTHALFKALLFMCAGSMIHNLS-DSQDI 94
Cdd:MTH00032 294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  95 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCL----------------------------------- 139
Cdd:MTH00032 374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILELTYSgrnmgipfgssllkiqgdigikkddrgsiggpegy 453

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 140 -SWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIFPV----- 213
Cdd:MTH00032 454 pSRGSAFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVGYLIQDIligdi 533

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 214 ------PYVIVLPWYLKFLTMFVVIMGSYLGYLVSDFDYFYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGH-N 286
Cdd:MTH00032 534 ehpivpPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAWQGDHLINKLVAIPLFSFGHwG 613

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 401889623 287 LSKSFDYGWGELLGGQGLYSFFLYMIDYIQSLYDSNFKVYLLTFI 331
Cdd:MTH00032 614 IYKTLDRGWLELFGPQGISTIALRVSQFISNLQSGVISRYALVLL 658
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-153 3.10e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 108.17  E-value: 3.10e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623    1 RFSPMLLTYNYGW--FLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSG---LAFFHLLTHALFKA 75
Cdd:pfam00361 134 RRSLLYLPSSPFIqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSA 213

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 401889623   76 LLFMCAGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFIS 153
Cdd:pfam00361 214 GLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 18-190 6.34e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 108.44  E-value: 6.34e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  18 IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNL--------S 89
Cdd:CHL00025 297 IGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspD 376

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  90 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDlilEIVCLSWVNFLIF-FLYFISTGLTASYSFRLFYYS 168
Cdd:CHL00025 377 KSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSWLYSPIFaIIAWSTAGLTAFYMFRIYLLT 453

                        170       180
                 ....*....|....*....|....*
gi 401889623 169 MMGD---NNFYPSYFFDDKSYFISF 190
Cdd:CHL00025 454 FEGHlrvHFQNYSGKKNSSFYSISL 478
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-167 5.87e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 98.68  E-value: 5.87e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  11 YGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSGL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG0651  271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtPLGLagALFHLLNHALAKALLFLAAGAIERA 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  88 LsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVcLSWVNFLIFFLYFISTGLTASYSFRLFYY 167
Cdd:COG0651  351 T-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-293 1.51e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 92.29  E-value: 1.51e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00095 216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  81 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00095 296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 161 SFRLFYYSMMGDNNFYPSYFFDDKSYFISFGMIglLFVAVFGGSFLSWLIFPVPYVIVLPWYLKFLTMFVVIMGSYLGYL 240
Cdd:MTH00095 376 SYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV--FFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFK 453

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 401889623 241 VSDFDYFYGLFSLSFLSFVSFVGSMWFMPFLSTNYISYLPLSAGHNLSKSFDY 293
Cdd:MTH00095 454 LLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSFFFFS 506
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-171 1.15e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 89.55  E-value: 1.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  10 NYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSGL--AFFHLLTHALFKALLFMCAGSMIH 86
Cdd:PRK08375 269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLtPLALaaGLLHLLHHALMKGALFLAAGAIEV 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  87 NlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILEIVCLSWVNFLIFFLyfISTGLTASYSFRLF 165
Cdd:PRK08375 349 T-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                 ....*.
gi 401889623 166 YYSMMG 171
Cdd:PRK08375 426 YRAFFG 431
PRK12650 PRK12650
DUF4040 family protein;
1-135 4.46e-19

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 88.18  E-value: 4.46e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPmLLTYNYGWFLLMIGC--MTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---GLAFFHLLTHALFKA 75
Cdd:PRK12650 260 RFSP-VFHDVAVWNWLLIIVgmITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKS 338

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  76 LLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12650 339 SLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-163 1.61e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 83.70  E-value: 1.61e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  13 WFLL--MIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySGLA----FFHLLTHALFKALLFMCAGSMIH 86
Cdd:PRK12648 270 WFWIvgGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAGIIDH 348

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  87 NlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILEIVCLSWVNFLIFFLYFISTGLTASYSF 162
Cdd:PRK12648 349 E-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSL 427


                 .
gi 401889623 163 R 163
Cdd:PRK12648 428 R 428
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-166 1.29e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 80.74  E-value: 1.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  13 WFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS-----GLAFfhLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12644 268 PTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalaGLAM--LLAHALFKAALFLVVGIIDHS 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  88 lSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIV----CLSWVNFLIFFLYFISTGLTASYSFR 163
Cdd:PRK12644 346 -TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLR 424


                 ...
gi 401889623 164 LFY 166
Cdd:PRK12644 425 FLW 427
PRK12646 PRK12646
DUF4040 family protein;
1-135 1.33e-16

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 80.57  E-value: 1.33e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySGLA---------------- 63
Cdd:PRK12646 262 RFTPLLgLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIG-GGYAqhqqdaiasiyvfvlf 340

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 401889623  64 --FFHLLTHALFKALLFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12646 341 aaLFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 13-171 2.39e-16

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 79.97  E-value: 2.39e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  13 WFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGL----------------AFFHLLTHALFKAL 76
Cdd:PRK12645 275 WTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaaitaAIFHLINHATFKGS 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  77 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE---------IVCLSWVNFLIF 147
Cdd:PRK12645 355 LFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlnateanLFSLDTWGVLFP 433

                        170       180
                 ....*....|....*....|....
gi 401889623 148 FLYFISTGLTASYSFRLFYYSMMG 171
Cdd:PRK12645 434 VIAWVASVFTFVYSIIFIFKTFFG 457
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-135 8.10e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 78.42  E-value: 8.10e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPML-LTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGL---AFFHLLTHALFKAL 76
Cdd:PRK12647 247 RLNPVLgGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGA 326

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 401889623  77 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12647 327 LFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-166 2.22e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 76.55  E-value: 2.22e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  15 LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---GLAFFHLLTHALFKALLFMCAGSMIHNlSDS 91
Cdd:PRK12667 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQlglAAALFHIINHAIAKSLLFLASGVFIHA-AGT 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 401889623  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLSwvNFLIFFLY-FISTGLTASYSFRLFY 166
Cdd:PRK12667 377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASAISLVGYFRAWY 450
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-171 4.56e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 75.90  E-value: 4.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   2 FSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGL---------------AFFH 66
Cdd:PRK08376 277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  67 LLTHALFKALLFMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLswVNFLI 146
Cdd:PRK08376 357 IVNHALYKALLFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                        170       180
                 ....*....|....*....|....*
gi 401889623 147 FFLYFISTGLTASYSFRLFYYSMMG 171
Cdd:PRK08376 434 GVIAMIGSVLTLASFVKVFHTAFFG 458
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 14-158 7.63e-15

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 75.33  E-value: 7.63e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  14 FLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSMIHNlSDSQD 93
Cdd:PRK07390 286 VLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQD 364

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 401889623  94 IRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILEIVCLSWVNFLIFFLYFIST-GLTA 158
Cdd:PRK07390 365 LTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVnALTA 427
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-135 7.78e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 75.25  E-value: 7.78e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  13 WFLLM--IGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIlsMGYS---------GLAFFHLLTHALFKALLFMCA 81
Cdd:PRK12649 277 WFILVsgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTtyhepglgvAAATFHLLNHATFKACLFLVA 354

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 401889623  82 GSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12649 355 GIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 13-164 1.43e-13

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 71.34  E-value: 1.43e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  13 WFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSG---LAFFHLLTHALFKALLFMCAGSMIHNLS 89
Cdd:PRK08377 274 KLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLG 353

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 401889623  90 DSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeIVCLSWVNFLIFFLYFISTGLTASYSFRL 164
Cdd:PRK08377 354 GTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-200 2.12e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 67.53  E-value: 2.12e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  12 GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGYSGLAFFHLLTHALFKALLFMCAGSmIHNL 88
Cdd:PRK06589 280 FNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSL 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  89 SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLS---WVNFLIFFLYFISTGLTASYSFRLF 165
Cdd:PRK06589 359 KKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKIL 438

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 401889623 166 YysmmgdNNFYPSYffdDKSYFISFGMIGLLFVAV 200
Cdd:PRK06589 439 S------SIYKPSL---SENSFITKSLPYLMQISV 464
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-140 2.98e-12

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 67.22  E-value: 2.98e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  12 GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLA--------------FFHLLTHALFKALL 77
Cdd:PRK06521 276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFIAygmpllaalaltaaLYHLLNHALFKSLL 355

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 401889623  78 FMCAGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVCLS 140
Cdd:PRK06521 356 FLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 11-127 4.23e-12

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 66.77  E-value: 4.23e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  11 YGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLA--------------FFHLLTHALFKAL 76
Cdd:PRK08042 244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 401889623  77 LFMCAGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGF 127
Cdd:PRK08042 324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 11-135 4.55e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 66.68  E-value: 4.55e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  11 YGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM--------------SILSMGYSGLAFFHLLTHALFKAL 76
Cdd:PRK08667 269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILmgiglyvifgvyglDTLALLALGGALFHSLNHALFKSL 348

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 401889623  77 LFMCAGSMIHNLSDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 12-166 1.71e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 65.02  E-value: 1.71e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  12 GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---GLAFFHLLTHALFKALLFMCAGSMIHNL 88
Cdd:PRK08668 272 NYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYRT 351

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 401889623  89 SDSQdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEIVcLSWVNFLIFFLYFISTGLTASYSFRLFY 166
Cdd:PRK08668 352 GTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-171 2.17e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 64.33  E-value: 2.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  11 YGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM----SILSMGYSGlAFFHLLTHALFKALLFMCAGsMIH 86
Cdd:COG1008  274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLlgifALNPLGLQG-AVLQMVSHGLITAALFLLVG-VLY 351

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  87 NLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeiVCLSWVNFLIFFLYFISTGLTASYSFRLFY 166
Cdd:COG1008  352 DRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLILTAAYLLWMYQ 429


                 ....*
gi 401889623 167 YSMMG 171
Cdd:COG1008  430 RVFFG 434
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-177 7.17e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 63.04  E-value: 7.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  14 FLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSGL--AFFHLLTHALFKALLFMCAGSMIHnLSD 90
Cdd:PRK07691 277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITG 355

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  91 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMM 170
Cdd:PRK07691 356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE-GTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFW 434


                 ....*..
gi 401889623 171 GDNNFYP 177
Cdd:PRK07691 435 GEPKGYD 441
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-135 1.07e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 62.28  E-value: 1.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   6 LLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGysglAFFHLlTHALFKALLFMCAGSmI 85
Cdd:PRK07234 239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGA-L 312

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 401889623  86 HNLSDSQDIRFMGSIVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07234 313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 12-134 1.09e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 62.30  E-value: 1.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  12 GWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGL------AFFHLLTHALFKALLFMCAGSMI 85
Cdd:PRK06525 272 GYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlalegSIAYIFNHAFAKSLFFLVAGALS 351

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 401889623  86 HNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06525 352 YSCG-TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
24-134 2.82e-10

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 61.06  E-value: 2.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  24 FMAGLGANF---EFDLKKIIALSTLSQLGLMMSILSMGySGL----AFFHLLTHALFKALLFMCAGSMIHNLSDSqDIRF 96
Cdd:PRK12668 249 AMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KLTE 326

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 401889623  97 MGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12668 327 LGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-243 3.84e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 60.66  E-value: 3.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00063 209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  81 AGSMIHNLSDSQDIR-----FMGSIVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLYFISTG 155
Cdd:MTH00063 289 VGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVF 363

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623 156 LTASYSFRLFYYSMMGDNNFYPSYFFDdksYFISFGMigllfvaVFGGSFLSWLIFP-VPYVIVLPWYLKFLTMFVVIMG 234
Cdd:MTH00063 364 LSYLYSFRLCLILFGVKSSLSSGVRFL---FFNSGLM-------VFLWLFINYYVFLlLDEVVYLGVFISLVLLLVQLLG 433


                 ....*....
gi 401889623 235 SYLGYLVSD 243
Cdd:MTH00063 434 LLVGVLFYD 442
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 13-172 6.77e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 56.75  E-value: 6.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  13 WFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSM---GYSGlAFFHLLTHALFKALLFMCAGSMIHNL 88
Cdd:PRK05846 278 PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGfVTLGIFAGnqlGIQG-AIFQMISHGLSSAALFLLVGVLYDRL 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  89 SdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeiVCLSWVNFLIFFLYFISTGLTASYSFRLFYYS 168
Cdd:PRK05846 357 H-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRV 433


                 ....
gi 401889623 169 MMGD 172
Cdd:PRK05846 434 MFGP 437
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-135 1.24e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 49.97  E-value: 1.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  14 FLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM----GYSGlAFFHLLTHALFKALLFMCAGsMIHNLS 89
Cdd:PRK12665 275 LLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIYYVAHHITVQTTLFLVVG-LIERQA 352

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 401889623  90 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12665 353 GSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
15-174 1.27e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 49.95  E-value: 1.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  15 LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMS-ILSMGYSGL--AFFHLLTHALFKALLFMCAGSMIHnLSDS 91
Cdd:PRK12663 275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAGIngAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEiVCLSWVNFLIFFLYFIsTGLTASYS-FRLFYYSMM 170
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ-GALDNGAYILLALMLI-TSLITMYSlFRIFFLAYW 431


                 ....
gi 401889623 171 GDNN 174
Cdd:PRK12663 432 GDKD 435
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-83 1.48e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 49.70  E-value: 1.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPMLLTYNYG-WFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:PRK08168 251 RFAPLLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFL 330


                 ....
gi 401889623  80 CAGS 83
Cdd:PRK08168 331 SASE 334
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-130 2.67e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.96  E-value: 2.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   5 MLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSGL--AFFHLLTHALFKALLFMCA 81
Cdd:PRK12662 272 VFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVS 351

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 401889623  82 GSMIHNLsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:PRK12662 352 GSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 5-211 2.74e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 45.20  E-value: 2.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   5 MLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFMCAGSM 84
Cdd:MTH00160 136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  85 IHNLSDSQDIRFMGSIVNFMpltsvcFNVSSLSLCGMPFLAGFYSKDLILEIVCLSWVNFLIFFLyFISTGLTASYSFRL 164
Cdd:MTH00160 216 IFFLNQLFNSNNKSKKIKFL------LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL-IMSSLITLYFYLRI 288

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 401889623 165 FYYSMMGdNNFYPSYFFDDKSYFISFGMIGLLFVAVFGGSFLSWLIF 211
Cdd:MTH00160 289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 15-134 2.88e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.69  E-value: 2.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  15 LLMI-GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySGLAFF----HLLTHALFKALLFMCAGSMIHNlS 89
Cdd:PRK06458 283 LLLIfGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK-Y 360

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 401889623  90 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06458 361 GTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 15-165 5.80e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 44.75  E-value: 5.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  15 LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSGLAF---FHLLTHALFKALLFMCAGsMIHNLSDS 91
Cdd:PRK08676 276 LIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRS 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 401889623  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EIVCLS-WVNFLIFFLYFISTGLTASYSFRLF 165
Cdd:PRK08676 355 DRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-130 1.50e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 43.18  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  15 LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLG-LMMSILSMGYSGL--AFFHLLTHALFKALLFMCAGSMIHNLSDS 91
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGyLLLGLAAGTPLGVsaALFYLLAYLFMNLGAFAVILLLSRKGGEA 351

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 401889623  92 QDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:COG1007  352 EEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-211 1.60e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 43.18  E-value: 1.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   5 MLLTYNYGWFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS-----GLAFFHLLTHALFKALLFM 79
Cdd:PRK12664 194 LLLFFSGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSsgvaiGILILQIVLSVVYQTLLFM 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  80 CAGSMIhNLSDSQDIRFMGSIVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-EIVCLSWVNFLIFFLYFI-STGLT 157
Cdd:PRK12664 274 VADSVI-NRTRKFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLIThSIDTAGLTLVLYKKLFLIcSLLLF 351

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 401889623 158 ASYSFRLFYYSMMGDNNFYPSYffdDKSYFIS-FGMIGLLFVAVFGGSFLSWLIF 211
Cdd:PRK12664 352 ASVGLKFFWYAFISKSKSKPEA---EKVYIGSkLSMIILVLICVVLGMFNSYLLF 403
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 15-135 3.25e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 42.12  E-value: 3.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  15 LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSgLAFFHLLTHALFKALLFMcagsmIHNLSDSQDI 94
Cdd:MTH00112 154 LLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPK-LTLLTFYIYILMTTPMFL-----TLNTTSTKTL 227

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 401889623  95 RFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:MTH00112 228 KDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQ 268
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-83 3.40e-04

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 42.33  E-value: 3.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623   1 RFSPmLLTYNYGWFLLMIGCMTMFMAGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYSGLAFFHLLTHALFKALLFM 79
Cdd:PRK08601 255 RFSP-LFHDDIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                 ....
gi 401889623  80 CAGS 83
Cdd:PRK08601 334 QSGS 337
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
13-135 6.17e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.56  E-value: 6.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  13 WFLLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---GLAFFHLLTHALFKALLFMCAGSmIHNLS 89
Cdd:PRK06277 267 GVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPlgiVAGIFHAINHVIYKSALFLGAGI-VSYRT 345

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 401889623  90 DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK06277 346 KTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 15-129 1.91e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.01  E-value: 1.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401889623  15 LLMIGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM----SILSMGYSGlAFFHLLTHALFKALLFMCAGSM---IHN 87
Cdd:PRK12561 254 LAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLlgiaAFTDLGISG-AMLQMISHGLIAAALFFLTGVTyerTHT 332

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 401889623  88 LSdsqdIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYS 129
Cdd:PRK12561 333 LS----IPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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