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Conserved domains on  [gi|400296627|gb|AFP82503|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Sclerurus rufigularis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.06e-160

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 453.12  E-value: 1.06e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILLTIMAIT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 400296627 321 VTIFTTISIITAMTLLPLSPMIFSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.06e-160

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 453.12  E-value: 1.06e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILLTIMAIT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 400296627 321 VTIFTTISIITAMTLLPLSPMIFSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-298 1.72e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.44  E-value: 1.72e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   8 IFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDI 86
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNL 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  87 TQLTNPIS------------CLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMK----FPPMTLFLMTSSSLN 150
Cdd:COG1007  186 AGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 151 P---ILLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWM-TAIIIYNPK-LTLIAFYL--YCMMTTAIFLTL---- 219
Cdd:COG1007  266 AdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYLlaYLFMNLGAFAVIllls 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 220 -KTTKILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007  346 rKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 2.21e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.77  E-value: 2.21e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   23 SNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   91 NPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSL-ITGLLLATAMKFPP-----MTLFLMTSSSLNPILLTIMAITSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  165 GGWAGLNQTQTRKILAFSSISHLGWMTAII----IYNPKLTLIAFYLYCMMTTAIFL-----TLKTTKILKLSSMMAAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 400296627  236 KIPPLNGALLLALLSLAGLPPLTGFLPKWLII 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.64e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.93  E-value: 1.64e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   14 ILGTTITISSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQLTNP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   93 ------------ISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMK----FPPMTLFLMTSSSLNP---IL 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEawqIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  154 LTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIA--FYL--YCMMTTAIFLTL------KTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296627  224 ILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.06e-160

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 453.12  E-value: 1.06e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILLTIMAIT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 400296627 321 VTIFTTISIITAMTLLPLSPMIFSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 3.73e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 377.99  E-value: 3.73e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSlNPILLTIMAIT 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 400296627 321 -VTIFTTISIITAMTLLPLSPMIFSIT 346
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 3.59e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 375.80  E-value: 3.59e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILLTIMAIT 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 400296627 321 VTIFTTISIITAMTLLPLSPMIFSI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 2.00e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 332.97  E-value: 2.00e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILLTIMAIT 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPnSTNYMK-QWQ--T 317
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfeN 319

                        330       340
                 ....*....|....*....|....*....
gi 400296627 318 KKPVTIFTTISIITAMtLLPLSPMIFSIT 346
Cdd:MTH00105 320 TKPMTLLPTLIILSTM-LLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 7.75e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 283.01  E-value: 7.75e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILLTIMAIT 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 400296627 321 VTIFTTISIITAMTLLPLSPMIFSIT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-307 9.29e-81

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 249.85  E-value: 9.29e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILLTIMAIT 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPN 307
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 8.65e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 190.03  E-value: 8.65e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   1 MNPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWF 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  81 TGqwditqLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLnpiLLTIMAIT 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN---FIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCAtITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|...
gi 400296627 321 VTIFTTISIITAMTLLPLSPMIF 343
Cdd:MTH00160 312 SLILNFLSFISLFGLILSSLLFL 334
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 1.67e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.44  E-value: 1.67e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   5 AKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  85 DITqltnpiscLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPI-LLTIMAITSTA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 164 LGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLkTTKILKLSSMMAAWTKIPPLNGA 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 400296627 244 LLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATI 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-310 1.72e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 155.32  E-value: 1.72e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   7 LIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTnawftgQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  87 TQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILLTIMAITSTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 167 WAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPLNGALLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296627 247 ALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYcATITLPPNSTN 310
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-298 2.12e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.73  E-value: 2.12e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   8 IFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTtnAWFTGQWdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY--- 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  88 qlTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPmtLFLMTSSSLNPILLTIMAITSTALGGW 167
Cdd:MTH00197  77 --LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 168 AGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKTTKILKLSSMMAAWTKIPPLNGALLLA 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 400296627 248 LLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-298 1.72e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.44  E-value: 1.72e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   8 IFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDI 86
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNL 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  87 TQLTNPIS------------CLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMK----FPPMTLFLMTSSSLN 150
Cdd:COG1007  186 AGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 151 P---ILLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWM-TAIIIYNPK-LTLIAFYL--YCMMTTAIFLTL---- 219
Cdd:COG1007  266 AdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYLlaYLFMNLGAFAVIllls 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 220 -KTTKILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:COG1007  346 rKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-296 4.86e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 102.21  E-value: 4.86e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   9 FTLSL--ILGTTITISSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWD 85
Cdd:PRK05777 106 YLLVLfaLLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  86 ITQLTNPIS------------CLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMK---FPPMT-LFLMTSSSL 149
Cdd:PRK05777 186 FAGIAKALAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGL 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 150 NP---ILLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWM-TAIIIYNPK-LTLIAFYL--YCMMTTAIFLTL--- 219
Cdd:PRK05777 266 SEdwqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEgYSAVLFYLlaYLFMTLGAFGVIsll 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 220 -----KTTKILKLSSMmaAWTKiPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYL 294
Cdd:PRK05777 346 rrkggEAESISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422


                 ..
gi 400296627 295 RL 296
Cdd:PRK05777 423 RV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 2.21e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.77  E-value: 2.21e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   23 SNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   91 NPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSL-ITGLLLATAMKFPP-----MTLFLMTSSSLNPILLTIMAITSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  165 GGWAGLNQTQTRKILAFSSISHLGWMTAII----IYNPKLTLIAFYLYCMMTTAIFL-----TLKTTKILKLSSMMAAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 400296627  236 KIPPLNGALLLALLSLAGLPPLTGFLPKWLII 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-296 1.74e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.78  E-value: 1.74e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   8 IFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  87 ----TQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPILltIMAITST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVL--ICAVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 163 ALGGWAGLNQTQTRKILAFSSISHLG---WMTAIIIYNP-KLTLIAFYLYCMMTTAIF---LTLKTTK--ILKLSSMMaa 233
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFsiiLSLKLTKglIVEVSGLS-- 336

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 400296627 234 wTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00199 337 -RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.96e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 96.64  E-value: 1.96e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  13 LILGTTITISSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFS-------------STTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  79 WFTGQWDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLmtSSSLNPILLTIMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 159 ITSTALGGWAGLNQTQTRKILAFSSISHLGWMTAII----IYNPKLTLIAFYLYCMMTTAIF---LTLKTTK--ILKLSS 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 400296627 230 MMaawTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.64e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.93  E-value: 1.64e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   14 ILGTTITISSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQLTNP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   93 ------------ISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMK----FPPMTLFLMTSSSLNP---IL 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEawqIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  154 LTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIA--FYL--YCMMTTAIFLTL------KTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296627  224 ILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-296 2.19e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.42  E-value: 2.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   9 FTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQ 88
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  89 LTNPIS----------CLLLTTAISIKLGLVPFHFWFPEVLQG-----SSLITGLLLATA----MKFPPMTLFLMTSSSL 149
Cdd:COG0651  192 LAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAapspvSALLSGLLTKVGvyaiLRVLTLLFGADPALFL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 150 NPILLtIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLYC----MMTTAIFLT----LKT 221
Cdd:COG0651  272 GTLLL-VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERA 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 400296627 222 TKILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:COG0651  351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-190 8.74e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.20  E-value: 8.74e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   3 PQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAI---------EAATKYFLTQAAASTLLLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  74 STTNAWFTGQ--------------WDITQLTNPISCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFppM 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 400296627 140 TLFLMTSSSLNPILLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 9.80e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.80  E-value: 9.80e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   7 LIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHP-RAIEAATKYFLTQAAASTLLL--FSsttnaWFTGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  84 -------WDI------TQLTNPISCLL----LTTAISIKLGLVPFHFWFPEVLQGS-----------SLITGLLLATAMk 135
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI- 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 136 fppMTLFLMTSSSLNPILLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWMTAIII-------YNPKLTLIAFYLY 208
Cdd:CHL00049 268 ---FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIF 344
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-307 9.46e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.51  E-value: 9.46e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQLTN--PISCLLLT------TAISI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 105 KLGLVPFHFWFPEVLQG-SSLITGLLLATAMKFPPMTLF----------LMTSSSLNPILLTIMAITSTAlGGWAGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvfggdFRFALGLGWLLAVLALLSMLV-GSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 174 QTRKILAFSSISHLGWMTAIIIYNPKLTLIA--FYLYCMMTT---------AIFLTLKTTKILKLSSMMaawTKIPPLNG 242
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLLHHALMkgalflaagAIEVTYGTRRLSELSGLG---RRMPLTAA 370

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 400296627 243 ALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPN 307
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPP 435
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 6.23e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.01  E-value: 6.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  49 HPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQW--DITQLTN-PIS-------CLLLTTAISIKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 119 LQ-----GSSLITGLLLATA----MKFPpMTLFLMTSSSLNPILLtIMAITSTALGGWAGLNQTQTRKILAFSSISHLGW 189
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                 ...
gi 400296627 190 MTA 192
Cdd:COG1008  314 VLL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-191 2.57e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.86  E-value: 2.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   50 PRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQ-WDITQLTN-PISC-------LLLTTAISIKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELLNlPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  119 ---LQGSSLITGLLLATA----MKFpPMTLFLMTSSSLNPILLtIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWMT 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYFAPVLA-ALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-188 5.89e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.82  E-value: 5.89e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  50 PRAIEAATKYFLTQAAASTLLLFSST---------TNAWFTGQWDITQLTNP--ISCLLLTTAISIKLGLVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllyglsggsTQLSAIALALITSPSLGlaLALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 400296627 119 LQGSSLITGLLLATAMK---FPPMTLFLMTSSSLNP----ILLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLG 188
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-198 9.31e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.14  E-value: 9.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  13 LILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAA------STLLLFSSTTNAWFTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  87 TQLTNP----------ISCLLLTTAISIKLGLVPFHFWFPEVLQG-----SSLITGLLLATAMKFPPMTLFLMTSSSLNP 151
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKapsvvSALLSGTVLNIGIYGILRLSALLRQSGAAE 270

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 400296627 152 I---LLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWM-TAIIIYNP 198
Cdd:PRK08676 271 QfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMlLGIGIGTP 321
PRK12650 PRK12650
DUF4040 family protein;
29-304 2.21e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 49.66  E-value: 2.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  29 AWtglEINTLAILPLIAKSHhPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDI------------TQLTNPISCL 96
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLsgilhsdvwaekPGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  97 LLTTAISiKLGLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNP-----ILLTIMAITSTALGGWAGLN 171
Cdd:PRK12650 214 IAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDvavwnWLLIIVGMITALMGAVFAVQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 172 QTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYL----YCMMTTAIFLTL-------KTTKILKLSSMmaaWTKIPPL 240
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVhtlaHALFKSSLFMLIgvvdhqaGTRDIRRLGSL---WRRMPFT 369

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296627 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMtPTATIIALLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650 370 FVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-313 2.46e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.94  E-value: 2.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  33 LEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSttnAWFTGQWDI-------------TQLTNPISCLLL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  99 TTAISIKLGLVPFHFWFPEVL-QGSSLITGLLLAT------AMKFPPMTLFLMTSSSLN-PILLTIMAITSTALGGWAGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYpAAPSSISAMLLVIkqaglyALARVLFSIYGPAINLATvGWVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 171 NQTQTRKILAFSSISHLGWM-----TAIIIY-NPKLTLIAF----------YLYCMMTTAIFLT----LKTTKILKLSSM 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgVGLAALgDPAMASYGEialaggiyhiVNHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 231 MAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHelTKQEMTPTATIIALL-SLLGLFFYLRLAYcaTITLPPNST 309
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH--TAFFGPPSE 462


                 ....
gi 400296627 310 NYMK 313
Cdd:PRK08376 463 KVMN 466
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 9.44e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.61  E-value: 9.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  96 LLLTTAISiKLGLVPFHFWFPEVLQGSSLITGLLLATAM---------KFPPMtlfLMTSSSLNPILLtIMAITSTALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVL-VLGLATMLLGG 282

                         90       100
                 ....*....|....*....|....*...
gi 400296627 167 WAGLNQTQTRKILAFSSISHLGWMTAII 194
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 4.27e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 45.40  E-value: 4.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  52 AIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQLTNPISCLLLTTAISIKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 116 PEVLQGSSLITGLLLATAM----------KFPPMTLFlmtssslnPILLTIMAITSTA---LGGWAGLNQTQTRKILAFS 182
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMvaagvflvarMYPVFEQF--------PAVMTVIAWTGAItafLGASIALTQNDIKKGLAYS 322


                 ....*...
gi 400296627 183 SISHLGWM 190
Cdd:PRK07376 323 TISQLGYM 330
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 43-191 6.37e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.42  E-value: 6.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  43 LIAKSHHPRAIEAATKYFLTQAAASTLLLFS----STTNAWFTGQWDITQLTN-PIS---------CLLLttAISIKLGL 108
Cdd:PRK05846 150 LIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNlPLPpgvqywlflAFFI--AFAVKMPM 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 109 VPFHFWFPEVLQ-----GSSLITGLLLATA----MKFPpMTLFLMTSSSLNPILLTiMAITSTALGGWAGLNQTQTRKIL 179
Cdd:PRK05846 228 FPLHTWLPDAHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLI 305

                        170
                 ....*....|..
gi 400296627 180 AFSSISHLGWMT 191
Cdd:PRK05846 306 AYSSISHMGFVT 317
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-190 1.11e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.92  E-value: 1.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  38 LAILPL---IAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTG--QWDITQL---TNPISCLLLTTA-----ISI 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 105 KLGLVPFHFWFPEV-LQGSSLITGLLLATAMKFPP-------MTLFLMTSSSLNPILLTIMAItSTALGGWAGLNQTQTR 176
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTygllrfgVGLFPEAWVYLAPWLATWAVV-SVLYGASCAIAQKDMK 296

                        170
                 ....*....|....
gi 400296627 177 KILAFSSISHLGWM 190
Cdd:PRK06473 297 KMVAYSSIGHMGYI 310
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-191 1.39e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.38  E-value: 1.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  20 TISSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFL------TQAAASTLLLFSSTTNAWFTGQWDI--TQLTN 91
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEMAIlwTELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  92 PISCL---LLTTAISI-------KLGLVPFHFWFPEVLQG-----SSLITGLLLATAMkFPPMTLFLMTSSSLNPI---- 152
Cdd:PRK06458 204 HASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVAL-YAVLRYYILIDAAIGSDfpgr 282

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 400296627 153 LLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWMT 191
Cdd:PRK06458 283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIA 321
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-188 1.46e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  55 AATKYFLTQAAASTLLLFSSTTNAWFTGQ--WDITQLTN---PISCLLLT-----TAISIKLGLVPFHFWFPEV-----L 119
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAhgeasA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 400296627 120 QGSSLITGLLLATA----MKFPpMTLFLMTSSSLNPILLtIMAITSTALGGWAGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12561 218 PVSMILAGVLLKMGgyalIRFN-VQMLPDAHVYFAPALA-ILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-192 1.66e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.22  E-value: 1.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  48 HHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQL------------TNPISCLLLTTAISiKLGLVPFHFWF 115
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilssplLTLILLLLLLGAFG-KSAQFPLHFWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 116 PEVLQGSSLITGLLLATAM---------KFPPmtLFLMTSSSLnPILLTIMAITSTaLGGWAGLNQTQTRKILAFSSISH 186
Cdd:COG1009  235 PDAMEGPTPVSALLHAATMvkagvyllaRLSP--LFALSPVWL-TVVAIIGAITAL-FAALIALAQTDIKRVLAYSTVSQ 310


                 ....*.
gi 400296627 187 LGWMTA 192
Cdd:COG1009  311 LGYMFL 316
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 3.73e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 3.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  33 LEINTLAILPLIAKSHHPRAIEAATKY-FLTQAA-----ASTLLLFSSTTNAWFTGqwdiTQLTNPISCLLLTTAISIKL 106
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYlFYSNVAmlfylIGAVLVYQANGTFAFSG----LATADPEAFALIALGLLVKG 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 107 GLVPFHFWFPEVLQGSSLITGLLLATAMK----FPPMTLFLMtSSSLNPILlTIMAITSTALGGWAGLNQTQTRKILAFS 182
Cdd:PRK07234 199 GIFVSGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALD-VPGLDLIV-RIFGVGTALLGVLFALLEKDLKRMLAFS 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 183 SISHLGWMTAIIIYNPKLTLIafylYCMMTTAIFL---TLKTTKILKLSSMMAA-WTKIPplngaLLLALLSLAGLPPLT 258
Cdd:PRK07234 277 TISQLGFILAAPLVGGLYALA----HGLVKSTLFLcagALPSRNFTELISQMLGiGKWIP-----LTMASFSIAGFPLLA 347

                        250
                 ....*....|...
gi 400296627 259 GFLPKWLIIHELT 271
Cdd:PRK07234 348 GFVSKVLTLKNLL 360
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-194 5.54e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.87  E-value: 5.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  92 PISCLLLTTAI--SIKLGLvpfHFWFPEVLQGSSLITGLLLATAMKFPPMTLF-----LMTSSSLNPILLTIMAITSTAL 164
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFF 302

                         90       100       110
                 ....*....|....*....|....*....|
gi 400296627 165 GGWAGLNQTQTRKILAFSSISHLGWMTAII 194
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLII 332
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-298 6.68e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.52  E-value: 6.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   2 NPQAKLIFTLSLILGTTITISSNHWAMAWTGLEINTLAILPLIAKSHHpRAIEAATKYFLTQAAASTLLLFSSTTNAWFT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  82 GQWDITQLTNP-----------ISCLLLTTAISIKLGLVPFHFWFPE-----------VLQGSSLITG---LLLATAMkF 136
Cdd:PRK08668 175 GTFDFADISQGlindtstgfalIVFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 137 PPMTLFL-----MTSSSLNPILLTIMAITsTALGGWAGLNQTQTRKILAFSSISHLGW-MTAIIIYNPKLTLIAFYL--- 207
Cdd:PRK08668 254 PGTKLFSefgtyRGVPLFNYILAWLGNIS-IIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSLGFAGGLFHvfn 332

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 208 YCMMTTAIFLTLKT----TKILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIA 283
Cdd:PRK08668 333 HALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAF 412

                        330
                 ....*....|....*
gi 400296627 284 LLSLLGLFFYLRLAY 298
Cdd:PRK08668 413 FGSIGSFLYVFRPLA 427
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 7.69e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 36.85  E-value: 7.69e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 400296627  291 FFYLRLAYCATITLPPNSTNYMKQWQTKKPVTIFT-TISIITAMTLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLlPTLTTLSILLLPLTP 51
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 8.10e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 8.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAWFTGQWDITQL-----------TNPISCLLLTTA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 102 ISIKLGLVPFHFWFPEVLQGS-SLITGLLLATAMKFPPMTL-----------FLMTSSSLNPILLtIMAITSTALGGWAG 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFNNVFM-ILAALAIVFGSVLA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 170 LNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLIAFYLY----CMMTTAIFLT-------LKTTKILKLSSMmaaWTKIP 238
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL---WKSMP 374

                        250       260
                 ....*....|....*....|....*....
gi 400296627 239 PLNGALLLALLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 375 KITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-284 1.05e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.57  E-value: 1.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   2 NPQAKLIFTLSLILGTTITISSNHWAMaWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLL-------LFSS 74
Cdd:PRK06589 115 SSRFLFFFNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLflpavilIYTK 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  75 TTNAWFTGQWDITQLTNPISCLLLTTAIsIKLGLVPFHFWFPEVLQGSSLITGLLLATAM----KFPPMTLFLMT--SSS 148
Cdd:PRK06589 194 TGNLDFVSGGLFSKNQSIILLLMFIYGI-AKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIfgLSY 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 149 LNPIL-----LTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGW--MTAIIIYNPKLTLIAFYLYCMMTTAIFLTLKT 221
Cdd:PRK06589 273 LQRIFaefnwLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVSHSFAKICLFYSM 352

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 400296627 222 TKILKLS------SMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATIIAL 284
Cdd:PRK06589 353 GSIYSLKkedqvdKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-188 3.99e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.94  E-value: 3.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  59 YFLTQAAASTLLLFSSTTNAWF-TGQWDITQLTNP-----ISCLLLTTAISIKLGLVPFHFWFPEVLQG-----SSLITG 127
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPAspsnvSALMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296627 128 LLLATAMKfpPMTLFLMTSSSLN---PILLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLG 188
Cdd:PRK08667 246 VMLKVAVY--GLVRFLMDVLSPElwwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-289 4.97e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 38.75  E-value: 4.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 109 VPFHFWFPEVLQGSSLITGLL-LATAMKfppMTLFLMtsSSLNP---------ILLTIMAITSTALGGWAGLNQTQTRKI 178
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLhSATMVK---AGIYLL--ARLNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLI 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 179 LAFSSISHLGWMTAIIIYNPKLTLIAFYLY----CMMTTAIFLT-------LKTTKILKLSSMmaaWTKIPPLNGALLLA 247
Cdd:PRK12647 287 LAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVagiidheTGTRDITKLGGL---RRAMPITAAAALLA 363

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 400296627 248 LLSLAGLPPLTGFLPKWLIIHELTkqEMTPTATIIALLSLLG 289
Cdd:PRK12647 364 ALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
5-190 5.67e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.53  E-value: 5.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627   5 AKLIFTLSlilGTTITISSNHWAM---AW--TGLEINTLailpLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTTNAW 79
Cdd:PRK08168 104 RALAGVLA---AVHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYL 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  80 FTGQWDITQLTNPI-----------SCLLLTTAISIKLGLVPFHFWFPEVLQGSSLITGLLLA--------TAMKFPPmt 140
Cdd:PRK08168 177 EVGSLSLSALWAHLaaqgaspslqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAP-- 254

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 400296627 141 lfLMTSSSLNPILLTIMAITSTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08168 255 --LLEQAPPARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 33-267 9.32e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 37.65  E-value: 9.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627  33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQAAAS------TLLLFSSTTNAWFTGQWDITQLTNPISCLLLTTAISIKL 106
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKS 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 107 GLVPFHFWFPEVLQGSSLITGLLLATAMKFPPMTLFLMTSSSLNPI------LLTIMAITSTALGGWAGLNQTQTRKILA 180
Cdd:PRK06525 222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPIphvigyVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296627 181 FSSISHLGWM---TAIIIYNPKLTLIA--FY---------LYCMMTTAIFLTLKTTKILKLSSMMaawTKIPPLNGALLL 246
Cdd:PRK06525 302 YSTITQLGYMffgLSLAILGSRLALEGsiAYifnhafaksLFFLVAGALSYSCGTRLLPRLRGVL---KKLPLVGVGFCV 378

                        250       260
                 ....*....|....*....|.
gi 400296627 247 ALLSLAGLPPLTGFLPKWLII 267
Cdd:PRK06525 379 AALAITGVPPFNGFFSKFPIF 399
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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