|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.09e-155 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 440.41 E-value: 1.09e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLLTVMAIA 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 400296569 321 VAIFTTISVTTTMTLLPLSPMIFSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-298 |
4.93e-24 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 102.12 E-value: 4.93e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 9 FSLSL--ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWD 85
Cdd:COG1007 105 YALLLfaTLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 86 ITQLTHPIS------------CLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK--------------FPPM 139
Cdd:COG1007 185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafaallrllveaFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 140 TLFLLSSSslnptllTVMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM-TAIILYNPK-LTLISFYL--YCAMTTAI 215
Cdd:COG1007 265 AADWQLLL-------AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYLlaYLFMNLGA 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 216 FLIL-----KTTKILKLSSMMTAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGL 290
Cdd:COG1007 338 FAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417
|
....*...
gi 400296569 291 FFYLRLAY 298
Cdd:COG1007 418 YYYLRVVK 425
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-267 |
4.75e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 91.61 E-value: 4.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 23 SNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQL-----------T 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 91 HPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLA-TAMKFPP-----MTLFLLSSSSLNPTLLTVMAIASTAL 164
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 165 GGWAGLNQTQTRKILAFSSISHLGWMTAIIL----YNPKLTLISFYLYCAMTTAIFL-----ILKTTKILKLSSMMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|..
gi 400296569 236 KIPPLNGALLLALLSLAGLPPLTGFLPKWLII 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-297 |
2.09e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 85.77 E-value: 2.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 14 ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 93 ------------ISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK---FPPMTLFLLSSSSLNPTLLTVM 157
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFGFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 158 ----AIASTALGGWAGLNQTQTRKILAFSSISHLGW-MTAIILYNPKLTLISFY---LYCAMTTAIFLIL------KTTK 223
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLsllrsyKDEW 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296569 224 ILKLSSMMTAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.09e-155 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 440.41 E-value: 1.09e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLLTVMAIA 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 400296569 321 VAIFTTISVTTTMTLLPLSPMIFSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
9.32e-125 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 361.81 E-value: 9.32e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLlTVMAIA 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLL-ITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 400296569 321 -VAIFTTISVTTTMTLLPLSPMIFSIT 346
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
1.05e-124 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 361.55 E-value: 1.05e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLLTVMAIA 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*
gi 400296569 321 VAIFTTISVTTTMTLLPLSPMIFSI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
5.76e-111 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 326.80 E-value: 5.76e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLLTVMAIA 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPnSTNYMK-QWQ--- 316
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfen 319
|
330 340 350
....*....|....*....|....*....|
gi 400296569 317 TKKPvaIFTTISVTTTMTLLPLSPMIFSIT 346
Cdd:MTH00105 320 TKPM--TLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.97e-92 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 279.16 E-value: 2.97e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLLTVMAIA 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*.
gi 400296569 321 VAIFTTISVTTTMTLLPLSPMIFSIT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-324 |
8.89e-78 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 242.14 E-value: 8.89e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLLTVMAIA 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
....
gi 400296569 321 VAIF 324
Cdd:MTH00041 321 ITVY 324
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
4.42e-56 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 185.80 E-value: 4.42e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 81 TGqwditqLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLltvMAIA 160
Cdd:MTH00160 82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIII---IIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCAtITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311
|
330 340
....*....|....*....|...
gi 400296569 321 VAIFTTISVTTTMTLLPLSPMIF 343
Cdd:MTH00160 312 SLILNFLSFISLFGLILSSLLFL 334
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
7-310 |
2.71e-45 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 157.63 E-value: 2.71e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 7 LIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTInawftgQWDI 86
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 87 TQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLLTVMAIASTALGG 166
Cdd:MTH00011 83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 167 WAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPLNGALLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296569 247 ALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYcATITLPPNSTN 310
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-302 |
6.84e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 156.20 E-value: 6.84e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 5 AKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQW 84
Cdd:MTH00144 5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 85 DITqlthpiscLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPM-TLFLLSSSSLNPTLLTVMAIASTA 163
Cdd:MTH00144 85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 164 LGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILkTTKILKLSSMMTAWTKIPPLNGA 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 400296569 244 LLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATI 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-298 |
1.04e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 134.80 E-value: 1.04e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 8 IFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTinAWFTGQWdit 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 88 qlTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMtlFLLSSSSLNPTLLTVMAIASTALGGW 167
Cdd:MTH00197 77 --LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 168 AGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLILKTTKILKLSSMMTAWTKIPPLNGALLLA 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 400296569 248 LLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAY 298
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-298 |
4.93e-24 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 102.12 E-value: 4.93e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 9 FSLSL--ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWD 85
Cdd:COG1007 105 YALLLfaTLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 86 ITQLTHPIS------------CLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK--------------FPPM 139
Cdd:COG1007 185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafaallrllveaFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 140 TLFLLSSSslnptllTVMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM-TAIILYNPK-LTLISFYL--YCAMTTAI 215
Cdd:COG1007 265 AADWQLLL-------AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYLlaYLFMNLGA 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 216 FLIL-----KTTKILKLSSMMTAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGL 290
Cdd:COG1007 338 FAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417
|
....*...
gi 400296569 291 FFYLRLAY 298
Cdd:COG1007 418 YYYLRVVK 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
9-296 |
9.08e-22 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 95.66 E-value: 9.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 9 FSLSL--ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWD 85
Cdd:PRK05777 106 YLLVLfaLLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 86 ITQLTHPIS------------CLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK--------------FPPM 139
Cdd:PRK05777 186 FAGIAKALAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafavllrllvvaFGGL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 140 TLFLLSSSslnptllTVMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLIS--FYL--YCAMTTAI 215
Cdd:PRK05777 266 SEDWQQVL-------AIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAvlFYLlaYLFMTLGA 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 216 FLIL--------KTTKILKLSSMmtAWTKiPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSL 287
Cdd:PRK05777 339 FGVIsllrrkggEAESISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSA 415
|
....*....
gi 400296569 288 LGLFFYLRL 296
Cdd:PRK05777 416 IGAFYYLRV 424
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-267 |
4.75e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 91.61 E-value: 4.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 23 SNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQL-----------T 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 91 HPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLA-TAMKFPP-----MTLFLLSSSSLNPTLLTVMAIASTAL 164
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 165 GGWAGLNQTQTRKILAFSSISHLGWMTAIIL----YNPKLTLISFYLYCAMTTAIFL-----ILKTTKILKLSSMMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|..
gi 400296569 236 KIPPLNGALLLALLSLAGLPPLTGFLPKWLII 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-296 |
6.88e-21 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 92.02 E-value: 6.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 13 LILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFS-------------STINA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 79 WFTGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLltVMA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILL--IGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 159 IASTALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNP----KLTLISFYLYCAMTTAIF---LILKTTK--ILKLSS 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKnlIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 400296569 230 MMtawTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRL 296
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
8-296 |
1.08e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 86.61 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 8 IFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 87 ----TQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLltVMAIAST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVL--ICAVLSI 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 163 ALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNP----KLTLISFYLYCAMTTAIFLI---LKTTK--ILKLSSMMta 233
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIilsLKLTKglIVEVSGLS-- 336
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 400296569 234 wTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRL 296
Cdd:MTH00199 337 -RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-297 |
2.09e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 85.77 E-value: 2.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 14 ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 93 ------------ISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK---FPPMTLFLLSSSSLNPTLLTVM 157
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFGFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 158 ----AIASTALGGWAGLNQTQTRKILAFSSISHLGW-MTAIILYNPKLTLISFY---LYCAMTTAIFLIL------KTTK 223
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLsllrsyKDEW 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296569 224 ILKLSSMMTAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
13-296 |
4.75e-15 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 75.57 E-value: 4.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 13 LILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTHP 92
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 93 IS----------CLLLTTAISIKLGLVPFHYWFPE-----------VLQGSSLTTG---LLLATAMKFPPMTLFLLSSSS 148
Cdd:COG0651 196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGvyaILRVLTLLFGADPALFLGTLL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 149 LnptlltVMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCA----MTTAIFL----ILK 220
Cdd:COG0651 276 L------VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLaagaIER 349
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 400296569 221 TTKILKLSSMMTAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRL 296
Cdd:COG0651 350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
9-190 |
2.89e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 64.49 E-value: 2.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 9 FSLSLI--LGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAI---------EAATKYFLTQAAASTLLLFSSTIN 77
Cdd:MTH00198 191 FALVLIvgLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALY 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 78 AWFTGQ--------------WDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFppMTLFL 143
Cdd:MTH00198 271 FGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYIL 348
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 400296569 144 LSSSSLNPTLLTVMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:MTH00198 349 LTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
7-221 |
4.68e-08 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 54.24 E-value: 4.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 7 LIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHP-RAIEAATKYFLTQAAASTLLL--FSstinaWFTGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 84 -------WDI------TQLTHPISCLL----LTTAISIKLGLVPFHYWFPEVLQGS-----------SLTTGLLLATAMk 135
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI- 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 136 fppMTLFLLSSSSLNPTLLTVMAIASTALGGWAGLNQTQTRKILAFSSISHLGW-MTAIILYNPKLTLISFYLYcaMTTA 214
Cdd:CHL00049 268 ---FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNDGYASMITY--MLFY 342
|
....*..
gi 400296569 215 IFLILKT 221
Cdd:CHL00049 343 IFMNLGT 349
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
50-188 |
2.74e-07 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 51.98 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 50 PRAIEAATKYFLTQAAASTLLLF-----------SSTINAWFTGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsggSTQLSAIALALITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDV 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 119 LQGS-----------SLTTGLLLATAMkfppMTLFLLSSSSLNPTLLTVMAIASTALGGWAGLNQTQTRKILAFSSISHL 187
Cdd:PRK02504 237 YEGSptpvvaflsvgSKAAGFALAIRL----LVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQA 312
|
.
gi 400296569 188 G 188
Cdd:PRK02504 313 G 313
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-307 |
7.57e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 50.65 E-value: 7.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTH--PISCLLLT------TAISI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 105 KLGLVPFHYWFPEVLQG-SSLTTGLLLATAMKFP---------PMTLFLLSSSSLNPTLLTVMAIASTALGGWAGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyaliriyfTVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 175 TRKILAFSSISHLGWM------------TAIILY--NPKLTLISFYLycaMTTAIFLILKTTKILKLSSMMTawtKIPPL 240
Cdd:PRK08375 295 VKRVLAYSTVSQMGYIllglalltplalAAGLLHllHHALMKGALFL---AAGAIEVTYGTRRLSELSGLGR---RMPLT 368
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 400296569 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPN 307
Cdd:PRK08375 369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPP 435
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-192 |
1.86e-05 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 46.23 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 49 HPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQW--DITQLT-HPIS-------CLLLTTAISIKLGLVPFHYWFPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 119 LQGSSLTTGLLLATAMK--------------FPpmtlfllSSSSLNPTLLTVMAIASTALGGWAGLNQTQTRKILAFSSI 184
Cdd:COG1008 236 HVEAPTAGSVLLAGVLLkmggygllrfalplFP-------EASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308
|
....*...
gi 400296569 185 SHLGWMTA 192
Cdd:COG1008 309 SHMGFVLL 316
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-313 |
2.28e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 45.86 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 33 LEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTInawFTGQWDI-------------TQLTHPISCLLL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTlnmaylavkmsenPTVVAKIALALF 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 99 TTAISIKLGLVPFHYWFPEVLQG--SSLTTGLLLATAMKFPPMTLFLLSSSSLNPTLLTV------MAIASTALGGWAGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAV 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 171 NQTQTRKILAFSSISHLGWM---TAIILYNPKLTLISFYLYCAMTTAIFLILKTTkILKLSSMMTAWT------------ 235
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllgLGVGLAALGDPAMASYGEIALAGGIYHIVNHA-LYKALLFLTAGAviyetgtrnlne 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 236 ------KIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHelTKQEMTPTATVIALL-SLLGLFFYLRLAYcaTITLPPNS 308
Cdd:PRK08376 386 lgglarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH--TAFFGPPS 461
|
....*
gi 400296569 309 TNYMK 313
Cdd:PRK08376 462 EKVMN 466
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
13-190 |
1.18e-04 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 43.59 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 13 LILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAA------STLLLFSSTINAWFTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 87 TQLTHP----------ISCLLLTTAISIKLGLVPFHYWFPEV-LQGSSLTTGLLLATAMKFPPMTLFLLSSSS------- 148
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSALLrqsgaae 270
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 400296569 149 LNPTLLTVMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
50-191 |
2.07e-04 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 43.00 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 50 PRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQ-WDITQL-THPISC-------LLLTTAISIKLGLVPFHYWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 119 ---LQGSSLTTGLLLATAMK---------FPPMTLFLLSSSSlnptlltVMAIASTALGGWAGLNQTQTRKILAFSSISH 186
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGTYgflrfnlplFPDASLYFAPVLA-------ALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
|
....*
gi 400296569 187 LGWMT 191
Cdd:TIGR01972 305 MGFVL 309
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-340 |
3.20e-04 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 38.01 E-value: 3.20e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 400296569 291 FFYLRLAYCATITLPPNSTNYMKQWQTKKPV-AIFTTISVTTTMTLLPLSP 340
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKnTLLLPTLTTLSILLLPLTP 51
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
96-194 |
2.18e-03 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 39.91 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 96 LLLTTAISiKLGLVPFHYWFPEVLQGSSLTTGLLLATAM---------KFPPMtlflLSSSSLNPTLLTVMAIASTALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG----FADVPVWRPTVLVLGLATMLLGG 282
|
90 100
....*....|....*....|....*...
gi 400296569 167 WAGLNQTQTRKILAFSSISHLGWMTAII 194
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLV 310
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
29-304 |
4.36e-03 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 38.87 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 29 AWtglEINTLAILPLIAKSHhPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDI------------TQLTHPISCL 96
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLsgilhsdvwaekPGLTTVVAVL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 97 LLTTAISiKLGLVPFHYWFPEVLQGSSLTTGLLLATAM---------KFPPMTLFLLSSSSLNPTLLTVMAIastaLGGW 167
Cdd:PRK12650 214 IAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVvkagiylllRFSPVFHDVAVWNWLLIIVGMITAL----MGAV 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 168 AGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCA----MTTAIFLIL-------KTTKILKLSSMmtaWTK 236
Cdd:PRK12650 289 FAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLahalFKSSLFMLIgvvdhqaGTRDIRRLGSL---WRR 365
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 400296569 237 IPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMtPTATVIALLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
43-191 |
5.41e-03 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 38.64 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 43 LIAKSHHPRAIEAATKYFLTQAAASTLLLFS----STINAWFTGQWDITQL-THPIS---------CLLLttAISIKLGL 108
Cdd:PRK05846 150 LIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPpgvqywlflAFFI--AFAVKMPM 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296569 109 VPFHYWFPEVLQ-----GSSLTTGLLLATA----MKFP-PMTLFLLSSSSLNPTLLTVMAIASTAlggWAGLNQTQTRKI 178
Cdd:PRK05846 228 FPLHTWLPDAHVqaptaGSVLLAGILLKMGayglLRFSlPLFPDASHEFAPIIITLGVIAIIYGA---LVALAQTDIKKL 304
|
170
....*....|...
gi 400296569 179 LAFSSISHLGWMT 191
Cdd:PRK05846 305 IAYSSISHMGFVT 317
|
|
| |
