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Conserved domains on  [gi|399893794|gb|AFP54163|]
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NADH dehydrogenase subunt 2 (mitochondrion) [Eunymphicus cornutus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.77e-151

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 428.86  E-value: 3.77e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWAIKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 399893794 321 INTLTSPLTSLSILLLPLSPMILLTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.77e-151

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 428.86  E-value: 3.77e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWAIKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 399893794 321 INTLTSPLTSLSILLLPLSPMILLTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 2.87e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.14  E-value: 2.87e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  14 ALGTTITITSNHWAMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLF-SSMTNAwFTGQWDITQL-- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  90 ------TYPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSSlttalllstlmklPPIT-----------------IL 142
Cdd:COG1007  191 alaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaafaallrLL 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 143 LLTSHSLNP---TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFYM--YTLMTTSI 215
Cdd:COG1007  258 VEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGA 337

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 216 FLTL-----NTTNTLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGL 290
Cdd:COG1007  338 FAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417


                 ....*...
gi 399893794 291 FFYLRLAY 298
Cdd:COG1007  418 YYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.20e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 2.20e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   23 SNHWAMAWTGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   91 YPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPT------LLTTMSMMSIAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  165 GGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYMYTLMTTSIFL-----TLNTTNTLKLSTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 399893794  236 KTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 4.90e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 99.25  E-value: 4.90e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   15 LGTTITITSNHWAMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTYPP 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   94 SC------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILL-------LTSHSLNPTLL 154
Cdd:TIGR01770 193 SNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  155 TTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--MYTLMTTSIFLTL------NTTNT 224
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDEWI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 399893794  225 LKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLA 297
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.77e-151

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 428.86  E-value: 3.77e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWAIKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 399893794 321 INTLTSPLTSLSILLLPLSPMILLTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 4.25e-128

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 370.29  E-value: 4.25e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPItILLLTSHSLNPTLLTTMSMM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWAIKKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ....
gi 399893794 321 INTL 324
Cdd:MTH00135 320 QLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-325 3.08e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 365.78  E-value: 3.08e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWAIKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*
gi 399893794 321 INTLT 325
Cdd:MTH00070 321 TNNLL 325
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-324 9.56e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 323.72  E-value: 9.56e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSN-KMK-QWAIK 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENT 320


                 ....*.
gi 399893794 319 KPINTL 324
Cdd:MTH00105 321 KPMTLL 326
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-324 5.40e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.39  E-value: 5.40e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWAIKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....
gi 399893794 321 INTL 324
Cdd:MTH00200 321 SNLL 324
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-325 2.16e-85

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 261.79  E-value: 2.16e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  11 TSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLT 90
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  91 YPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMMSIALGGWMGL 170
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 171 NQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTLNTTLMITLLS 250
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 399893794 251 LAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWAIKKPINTLT 325
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYG 325
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-313 1.56e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 189.65  E-value: 1.56e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTSLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGqwditqLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILlltSHSLNPTLLTTMSMM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMK 313
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-302 1.48e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 163.52  E-value: 1.48e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  13 LALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITqltyp 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  93 pscLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPI-TILLLTSHSLNPTLLTTMSMMSIALGGWMGLN 171
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 172 QTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTlMTSWTKTPTLNTTLMITLLSL 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLLSL 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 399893794 252 AGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTI 302
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-310 1.54e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 160.72  E-value: 1.54e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   1 MSPFAKLISTTsLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSmtnawf 80
Cdd:MTH00011   4 TFPTMFLFSST-MTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMM 160
Cdd:MTH00011  77 TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTL 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYcSTITLPPNPSN 310
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-313 3.59e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.35  E-value: 3.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  12 SLALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMtnAWFTGQWditqlTY 91
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  92 PPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHslNPTLLTTMSMMSIALGGWMGLN 171
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 172 QTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLKLSTLMTSWTKTPTLNTTLMITLLSL 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 399893794 252 AGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYCSTITLPPNPSNKMK 313
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 2.87e-29

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 117.14  E-value: 2.87e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  14 ALGTTITITSNHWAMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLF-SSMTNAwFTGQWDITQL-- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  90 ------TYPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSSlttalllstlmklPPIT-----------------IL 142
Cdd:COG1007  191 alaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaafaallrLL 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 143 LLTSHSLNP---TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFYM--YTLMTTSI 215
Cdd:COG1007  258 VEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGA 337

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 216 FLTL-----NTTNTLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGL 290
Cdd:COG1007  338 FAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417


                 ....*...
gi 399893794 291 FFYLRLAY 298
Cdd:COG1007  418 YYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 9.00e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 108.58  E-value: 9.00e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  13 LALGTTITITSNHWAMAWTGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  79 WFTGQWDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLltSHSLNPTLLTTMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 159 MMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYMYTLMTTSIFLTLNTTNTLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 399893794 233 SWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 4.75e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 105.29  E-value: 4.75e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  14 ALGTTITITSNHWAMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  90 -----TYPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILL-------LTSHSLNPTL 153
Cdd:PRK05777 193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvafGGLSEDWQQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 154 LTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFYM--YTLMTTSIF--LTLNTTNTLKL 227
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISLLRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 399893794 228 STLmTSWT----KTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRL 296
Cdd:PRK05777 353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.20e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 2.20e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   23 SNHWAMAWTGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   91 YPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPT------LLTTMSMMSIAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  165 GGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYMYTLMTTSIFL-----TLNTTNTLKLSTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 399893794  236 KTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-297 4.90e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 99.25  E-value: 4.90e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   15 LGTTITITSNHWAMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTYPP 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   94 SC------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILL-------LTSHSLNPTLL 154
Cdd:TIGR01770 193 SNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  155 TTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--MYTLMTTSIFLTL------NTTNT 224
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDEWI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 399893794  225 LKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLA 297
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 4.66e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.54  E-value: 4.66e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  13 LALGTTITITSNHWAMAWTGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTY 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  92 PPSC----LLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTtmSMMSIALGGW 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 168 MGLNQTQTRKILAFSSISHLGWMTMIIIYNP----KLTLLTFYMYTLMTT---SIFLTLNTTNTLKLSTLMTSwTKTPTL 240
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVI 342

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRL 296
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 3.18e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 87.90  E-value: 3.18e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  13 LALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL--- 89
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  90 --TYPPS-----CLLLTTAIAIKLGLTPFHFWFPE-----------VLQGSSLttalllstlmKLPPITIL----LLTSH 147
Cdd:COG0651  196 laELDPGlllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLT----------KVGVYAILrvltLLFGA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 148 SLNP---TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPK-LTLLTFYM--YTLMTTSIFLT-- 218
Cdd:COG0651  266 DPALflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALLFLAag 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 219 --LNTTNTLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRL 296
Cdd:COG0651  346 aiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 13-296 2.32e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.90  E-value: 2.32e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  13 LALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAI---------EATTKYFLTQAAASTLLLFSSMTNAWFTGQ 83
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGN 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  84 --------------WDITQLTYPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLppITILLLTSHSL 149
Cdd:MTH00198 277 egmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVI 354

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 150 NPTLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-------IYNPKLTLLTFYMYTLMTTSIFLTLNTT 222
Cdd:MTH00198 355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEF 434

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 223 NTL------------------KLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAAL 284
Cdd:MTH00198 435 GTRtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYL 514

                        330
                 ....*....|....*....
gi 399893794 285 LSLLGL-------FFYLRL 296
Cdd:MTH00198 515 VALFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 3.93e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.95  E-value: 3.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  51 RAIEATTKYFLTQAAASTLLL--FSsmtnaWFTGQ-------WDI------TQLTYPPSCLL----LTTAIAIKLGLTPF 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 112 HFWFPEVLQGSSLTTALLLSTLMKLPP-------ITILLLTSHSLNPTLLTTMSMMSIALGGWMGLNQTQTRKILAFSSI 184
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAAsalatriFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 185 SHLGWMTM-IIIYNPKLTLLTfyMYTLMTTSIFLTLNTTNTLKLSTLMT----------SWTKTPTLNTTLMITLLSLAG 253
Cdd:CHL00049 314 GQIGYVIIgIIVGDSNDGYAS--MITYMLFYIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGG 391

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 399893794 254 LPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRL 296
Cdd:CHL00049 392 IPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-292 2.13e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.64  E-value: 2.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  38 LAIIP---LISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQW-----DITQLTYPPS-----CLLLTTAIAI 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 105 KLGLTPFHFWFPEVL-QGSSLTTALLLSTLMKLP-------PITILLLTSHSLNPTLLTtMSMMSIALGGWMGLNQTQTR 176
Cdd:COG1008  222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLK 300

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 177 KILAFSSISHLGWMTM-IIIYNPK-LTLLTFYM--YTLMTTSIFLTL----NTTNTLKLSTLMTSWTKTPTLNTTLMITL 248
Cdd:COG1008  301 RLIAYSSVSHMGFVLLgIFALNPLgLQGAVLQMvsHGLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFLLAA 380

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 399893794 249 LSLAGLPPLTGFLPKWLIIQELTKqemttTATIAALLSLLGLFF 292
Cdd:COG1008  381 LASLGLPGTSGFVGEFLVLLGAFQ-----VNPWLAILAALGLIL 419
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 4.78e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.66  E-value: 4.78e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  33 LEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFS-SMTNAwFTGQWDITQLT--YPPSCLLLT------TAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAgaLAENPTVVTafgfvlLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 104 IKLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTLLTTMSMmSIALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRaypaappvvtaLLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLALL-SMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 173 TQTRKILAFSSISHLGWMTMIIIYNPKLTLL--TFYM--YTLMTTSIFLTLN----TTNTLKLSTLMTSWTKTPTLNTTL 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 399893794 245 MITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAY 298
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 3.84e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 57.75  E-value: 3.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  50 PRAIEATTKYFLTQAAASTLLLF-SSMTNAWFTGQWDIT----QLTYPPSCLLLTT------AIAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 119 LQGSSLTTALLLSTLMKLPPITI---LLLTSHSLNPT----LLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 192 MIIIYNPK--LTLLTFYM--YTLMT----TSIFLTLNTTNTLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 317 IGLVAGTEagYASMVFYLlaYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-289 1.24e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.10  E-value: 1.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794   50 PRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQW----DITQLTYPPSC-----LLLTTAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  120 QGSSLTTALLLSTLMKLPPITILLL-------TSHSLNPtLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTM 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  193 IIIYNPKLTLL--TFYMYT--LMTTSIFLTLNT----TNTLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISgaVFQMIShgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260
                  ....*....|....*....|....*
gi 399893794  265 LIIQElTKQEMTTTATIAALLSLLG 289
Cdd:TIGR01972 391 LILLG-SFKVNPVVAFLAALGIVLA 414
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 2.20e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 55.39  E-value: 2.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  34 EINTLA---IIPLISKshhpRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQ----LTYPPS-------CLLLT 99
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfalivFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 100 TAIAIKLGLTPFHFWFPE-----------VLQGSSLTT-ALLLSTLMKLPPITILLLT-----SHSLNPTLLTTMSMMSI 162
Cdd:PRK08668 204 AFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 163 ALGGWMGLNQTQTRKILAFSSISHLGWmtmIIIYNPKLTLLTF-------YMYTLMTTSIFLTLNT----TNTLKLSTLM 231
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMG 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 399893794 232 TSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAY 298
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 152-298 4.50e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 54.39  E-value: 4.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 152 TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIiynpKLTLLTFYMYTLMTTSIF------------LTL 219
Cdd:COG1009  276 TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkallflgagsviHAT 351

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 220 NTTNTLKLSTLmtsWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQE-LTKQEMTTTATIAALL-SLLGLFFYLRLA 297
Cdd:COG1009  352 GTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLgAFLTAFYSFRLF 428


                 .
gi 399893794 298 Y 298
Cdd:COG1009  429 F 429
PRK12650 PRK12650
DUF4040 family protein;
98-304 9.93e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 53.89  E-value: 9.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  98 LTTAIAIKLGLT--------PFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSL--NPT---LLTTMSMMSIAL 164
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 165 GGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYT----LMTTSIFLTL----NTTNTLKLSTLMTSWTK 236
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 399893794 237 TPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMtTTATIAALLSLLGLFFYLRLAYCSTITL 304
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 3.14e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 52.02  E-value: 3.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  33 LEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSmtnAWFTGQWDITQLTY-------PPSCL------LL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYlavkmseNPTVVakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  99 TTAIAIKLGLTPFHFW----FPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPT----LLTTMSMMSIALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 171 NQTQTRKILAFSSISHLGWMTM---IIIYNPKLTLLTFYMYTLMTTSIFLTLN--------------------TTNTLKL 227
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyetgTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 399893794 228 STLMTSWTKTptlNTTLMITLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKT---TIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-297 3.27e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 51.85  E-value: 3.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  20 TITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFL------TQAAASTLLLFSSMTNAWFTGQWDI--TQLTY 91
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEMAIlwTELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  92 PPSCL---LLTTAIAI-------KLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLppitILLLTSHSLN 150
Cdd:PRK06458 204 HASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LIDAAIGSDF 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 151 P-TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKL----TLLTFYMYTLMTTSIFLT----LNT 221
Cdd:PRK06458 280 PgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLgifaALLHMLNHSLTKSAIFFAsgnvLQK 359

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 399893794 222 TNTLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIqeltkqemttTATIAALLSLLGLFFYLRLA 297
Cdd:PRK06458 360 YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL----------TAGLARGPLLIAILLLLLLT 425
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-296 4.40e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 48.41  E-value: 4.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 152 TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPKLTLLTFYmYT----LMTTSIFLTL------- 219
Cdd:PRK07691 276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVgVAMMTESGMIGAIY-YLihdmIVKAALFLLIgimikit 354

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 399893794 220 NTTNTLKLSTLMTSWtktPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRL 296
Cdd:PRK07691 355 GTTDLKKMGGLIKRY---PVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-266 1.13e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 47.22  E-value: 1.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  91 YPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPT-----LLTTMSMMSIALG 165
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTG 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 166 GWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMY----TLMTTSIFLTLNT----TNTLKLSTLMTSWTKT 237
Cdd:PRK12647 274 ALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAM 353

                        170       180
                 ....*....|....*....|....*....
gi 399893794 238 PTLNTTLMITLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 354 PITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-263 2.33e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.07  E-value: 2.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  81 TGQWDITQL-TYPPSCLLLTTAIAI-------KLGLTPFHFWFPEVLQGSSLTTALLLSTLM---------KLPPItilL 143
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---F 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 144 LTSHSLNPTLLTtMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFYM---YTLMTTSIFLTL 219
Cdd:PRK12644 261 ADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMllaHALFKAALFLVV 339

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 399893794 220 ----NTTNTLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 340 giidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-267 5.10e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.72  E-value: 5.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 152 TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMY----TLMTTSIFLTLNTT----N 223
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 399893794 224 TLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-267 1.35e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.65  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  50 PRAIEATTKYFLTQAAASTLLLFSSMTNAWF----TGQWDITQLTYPPSCLLLTT--------AIAIKLGLTPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 118 -----------VLQGSSLTTALLLSTLMKLPpitILLLTSHSLNPtLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISH 186
Cdd:PRK05846 237 ahvqaptagsvLLAGILLKMGAYGLLRFSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 187 LGWMTM-IIIYNPK-LTLLTFYM--YTLMTTSIFLTLNT----TNTLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLT 258
Cdd:PRK05846 313 MGFVTLgIFAGNQLgIQGAIFQMisHGLSSAALFLLVGVlydrLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTS 392


                 ....*....
gi 399893794 259 GFLPKWLII 267
Cdd:PRK05846 393 GFVGEFLIL 401
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-270 1.72e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.24  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  15 LGTTITITSNHWAM---AWTGLEINTLAIIPLISKSHHPRAIeattkyFLTQAAASTLLLFSSMTNAWF-TGQWDITQLT 90
Cdd:PRK06459  83 LGMAIVLTSDNYLLflaGWEIMTIPSYVAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTTNFSYLP 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  91 YPPSCLLLTTAIAIKLGLTPFHF--WFPEVLQGSSLTTALLLSTLMKLPPI----TILLLTSHSLNPTL---LTTMSMMS 161
Cdd:PRK06459 157 SPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVygilKMTILTQTIPIGYFgltILAIGAFS 236

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 162 IALGGWMGLNQTQTRKILAFSSISHLGWM-----TMIIIYNPKLTLLTFYMYTLMT---------TSIFLTLNTTNTLKL 227
Cdd:PRK06459 237 ILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILysfahsvakTGLFLSSGLQEKQSI 316

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 399893794 228 STLMTSWTKTPTLNTTLMItlLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 317 TYSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESL 357
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-295 1.91e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 43.20  E-value: 1.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  13 LALGTTITITSNHWAMAWTGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAA------STLLLFSSMTNAWFTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  87 TQLT-----YPPSCLLLT-----TAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPT---- 152
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 153 ----LLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFYM--YTLMTTSIFLTLNTTNT 224
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMlaHSLVKSGLFFSAGILHR 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 399893794 225 LKLST----LMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLG---LFFYLR 295
Cdd:PRK08676 351 QYRSDrfdrIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAssfAIFLLK 428
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
152-317 2.14e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.01  E-value: 2.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 152 TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFYMYTLMT--TSIFLTLNTTNTL-- 225
Cdd:PRK12663 273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtg 352

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 226 --KLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQ---ELTKQEMTTTATIAALLSLLGLFFYLRLAYCS 300
Cdd:PRK12663 353 yrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgalDNGAYILLALMLITSLITMYSLFRIFFLAYWG 432

                        170
                 ....*....|....*..
gi 399893794 301 TITLPPNPSNKMKQWAI 317
Cdd:PRK12663 433 DKDGEEVNFKPIPLYRK 449
PRK12646 PRK12646
DUF4040 family protein;
91-272 2.44e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 42.82  E-value: 2.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  91 YPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITIL-----LLTSHSLNPTLLTTMSMMSIALG 165
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLfrftpLLGLSNMYIYIVTFVGLITMLFG 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 166 GWMGLNQTQTRKILAFSSISHLGW-MTMI-----IIYNPKLTLLTFY-------MYTLMTTSIF---------LTLNTTN 223
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFkcalfmgvgIIDHEAG 368

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 399893794 224 TLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK12646 369 TRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.51e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.51  E-value: 3.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  48 HHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQLTYPPSC--------LLLTTAIAIKLGLT------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 114 WFPEVLQGSSLTTALLLSTLMKLPPITILLLTSHSLNPT-----LLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 189 WMTMIIIYNPK------LTLLTFYMYTLMTTSIFLTL---------NTTNTLKLSTLMTSWTKTPTLNTtlmITLLSLAG 253
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLLNHATFKACLFLvagivaheaATRDIRKLGGLRKEMPITFIVAS---IAALAMAG 392

                        250
                 ....*....|
gi 399893794 254 LPPLTGFLPK 263
Cdd:PRK12649 393 IPPLNGFLSK 402
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 4.54e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 42.12  E-value: 4.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  96 LLLTTAIAIKLGLTPFHFWFPEV-LQGSSLTTALLLSTLMKLPPITILLLTSHSLNPTL-----LTTMSMMSIALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAhANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 170 LNQTQTRKILAFSSISHLG--------WMTMIIIYNPKLTLLTFY--MYTLMTTSIFLTL---------NTTNTLKLSTL 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 399893794 231 MTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-305 8.01e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.22  E-value: 8.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  95 CLLLTTAIAIKLGLTPFHFWFPEVLQGSSLTTALLLSTLMKLPPITILLLTS--HSLNPTLL---TTMSMMSIALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplFEQAPLALiivTIVGSLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 170 LNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFYMYTLMTTSIFLT--------LNTTNTLKLSTLMTSwtkTPTL 240
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSagsvihalSDEQDMRKMGGLISF---LPLT 369

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 399893794 241 NTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTAT-IAALLSLLGLFFYLRLAYCSTITLP 305
Cdd:MTH00020 370 YIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYwLGCFSALLTAFYSIRLIYLTFLSNT 435
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
152-308 8.07e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 8.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 152 TLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLT----LLTFYMYTLMTTSIFL----TLNTTN 223
Cdd:PRK06277 267 GVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagiVSYRTK 346

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 224 TLKLSTLMTSWTKTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQELTKQEMTTTATIAALLSLLGLFFYLRLAYcsTIT 303
Cdd:PRK06277 347 TSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIY 424


                 ....*
gi 399893794 304 LPPNP 308
Cdd:PRK06277 425 LKPKP 429
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 1.22e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.72  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  96 LLLTTAIAIKLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKlppitILLLTSHSLNpTLLTTMSMMSIAL 164
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVYAIIRTH-----TLLFPGGGLD-TLLMVVALLTMVV 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 165 GGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFYM--YTLMTTSIFLTLN-------TTNTLKLSTLMTS 233
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFgIALSTVAgLSGAIYYVahHITVQTTLFLVVGlierqagSSSLRRLGGLAKA 366

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 399893794 234 wtkTPTLNTTLMITLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 367 ---SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-268 1.40e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.33  E-value: 1.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 111 FHFWFPEVLQGSSLTTALLLSTLMKLPPITIL-----LLTSHSLNPTLLTTMSMMSIALGGWMGLNQTQTRKILAFSSIS 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 186 HLGWMTMIIIYNPKLTLLTFYM--YTLMTTSIFL---------TLNTTNTLKLSTLMTSwtkTPTLNTTLMITLLSLAGL 254
Cdd:MTH00032 324 QLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGSFSIMGL 400

                        170
                 ....*....|....
gi 399893794 255 PPLTGFLPKWLIIQ 268
Cdd:MTH00032 401 PYLTGFYSKDLILE 414
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-267 5.26e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 5.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 101 AIAIKLGLTPFHFWFPE-----------VLQGSSLTTALLLSTLMKLPpitILLLTSHSLNPTLLtTMSMMSIALGGWMG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLGGYGLVRLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 170 LNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYMYTL---MTTSIFLTLNTTNTLKLSTLMTSWTK-----TPTLN 241
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgIVSSLLFILVTILYDRHHTRLIKYYRglsitMPIWG 394

                        170       180
                 ....*....|....*....|....*.
gi 399893794 242 TTLMITLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226 395 TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 5.46e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 38.39  E-value: 5.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  33 LEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMTNAWFTGQWDITQL-TYPPSCL-LLTTAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLaTADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 111 FHFWFPEVLQGSSlttalllstlmklPPITILL----------------LTSHSLNPtLLTTMSMMSIALGGWMGLNQTQ 174
Cdd:PRK07234 203 SGLWLPLTHSEAE-------------PPVSALLsgvvvkagvfplvrcaLDVPGLDL-IVRIFGVGTALLGVLFALLEKD 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 175 TRKILAFSSISHLGWmtmiIIYNPKLTLLTFYMYTLMTTSIFL---TLNTTNTLKL-STLMTSWTKTPtlnttLMITLLS 250
Cdd:PRK07234 269 LKRMLAFSTISQLGF----ILAAPLVGGLYALAHGLVKSTLFLcagALPSRNFTELiSQMLGIGKWIP-----LTMASFS 339

                        250       260
                 ....*....|....*....|.
gi 399893794 251 LAGLPPLTGFLPKWLIIQELT 271
Cdd:PRK07234 340 IAGFPLLAGFVSKVLTLKNLL 360
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-290 9.78e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 37.70  E-value: 9.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794  55 ATTKYFLTQAAASTLLLFSSMTNAWFTGQ--WDITQLT---YPPSCLLLT-----TAIAIKLGLTPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 118 ----VLQGSSLTTALLLSTLMKLPpitiLLLTSHSLNPTLLTTMSMMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMI 193
Cdd:PRK12561 218 pvsmILAGVLLKMGGYALIRFNVQ----MLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLG 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399893794 194 IIYNPKL----TLLTFYMYTLMTTSIFL----TLNTTNTL---KLSTLMTSWTKTPTLNTTlmITLLSLAgLPPLTGFLP 262
Cdd:PRK12561 294 IAAFTDLgisgAMLQMISHGLIAAALFFltgvTYERTHTLsipNMGGLAKVMPKTFALFTA--SSMASLA-LPGMSGFVS 370

                        250       260       270
                 ....*....|....*....|....*....|
gi 399893794 263 KWLIIQELTKQEMTTTA--TIAALLSLLGL 290
Cdd:PRK12561 371 ELTVFLGITSSDVYSSTfrTITILLAAVGL 400
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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