dextransucrase [Leuconostoc mesenteroides]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||||||||||
Glyco_hydro_70 super family | cl27864 | Glycosyl hydrolase family 70; Members of this family belong to glycosyl hydrolase family 70 ... |
370-1169 | 0e+00 | ||||||||||||
Glycosyl hydrolase family 70; Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain. The actual alignment was detected with superfamily member pfam02324: Pssm-ID: 426720 [Multi-domain] Cd Length: 831 Bit Score: 1009.20 E-value: 0e+00
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
971-1455 | 5.89e-22 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; : Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 101.49 E-value: 5.89e-22
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
167-219 | 3.46e-17 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. : Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 76.79 E-value: 3.46e-17
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
159-283 | 3.15e-16 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; : Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 83.38 E-value: 3.15e-16
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KxYKxGKxW_sig | pfam19258 | KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as ... |
5-40 | 1.81e-05 | ||||||||||||
KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK signal peptide. : Pssm-ID: 466014 [Multi-domain] Cd Length: 41 Bit Score: 43.25 E-value: 1.81e-05
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Name | Accession | Description | Interval | E-value | ||||||||||||
Glyco_hydro_70 | pfam02324 | Glycosyl hydrolase family 70; Members of this family belong to glycosyl hydrolase family 70 ... |
370-1169 | 0e+00 | ||||||||||||
Glycosyl hydrolase family 70; Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain. Pssm-ID: 426720 [Multi-domain] Cd Length: 831 Bit Score: 1009.20 E-value: 0e+00
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
971-1455 | 5.89e-22 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 101.49 E-value: 5.89e-22
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
167-219 | 3.46e-17 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 76.79 E-value: 3.46e-17
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
1194-1255 | 1.52e-16 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 75.25 E-value: 1.52e-16
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
159-283 | 3.15e-16 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 83.38 E-value: 3.15e-16
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
176-216 | 1.31e-11 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 60.63 E-value: 1.31e-11
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
251-312 | 2.79e-10 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 57.53 E-value: 2.79e-10
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
1333-1376 | 5.01e-10 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 56.01 E-value: 5.01e-10
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AmyAc_bac_fung_AmyA | cd11318 | Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1, ... |
947-1026 | 5.39e-09 | ||||||||||||
Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase); AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes bacterial and fungal proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Pssm-ID: 200457 [Multi-domain] Cd Length: 391 Bit Score: 60.22 E-value: 5.39e-09
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PRK09441 | PRK09441 | cytoplasmic alpha-amylase; Reviewed |
494-839 | 6.49e-08 | ||||||||||||
cytoplasmic alpha-amylase; Reviewed Pssm-ID: 236518 [Multi-domain] Cd Length: 479 Bit Score: 56.82 E-value: 6.49e-08
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PspC_relate_1 | NF033840 | PspC-related protein choline-binding protein 1; Members of this family share C-terminal ... |
1332-1490 | 1.71e-06 | ||||||||||||
PspC-related protein choline-binding protein 1; Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC. Pssm-ID: 411409 [Multi-domain] Cd Length: 648 Bit Score: 52.78 E-value: 1.71e-06
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PspC_relate_1 | NF033840 | PspC-related protein choline-binding protein 1; Members of this family share C-terminal ... |
1291-1414 | 2.62e-06 | ||||||||||||
PspC-related protein choline-binding protein 1; Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC. Pssm-ID: 411409 [Multi-domain] Cd Length: 648 Bit Score: 52.01 E-value: 2.62e-06
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PspC_relate_1 | NF033840 | PspC-related protein choline-binding protein 1; Members of this family share C-terminal ... |
135-289 | 1.26e-05 | ||||||||||||
PspC-related protein choline-binding protein 1; Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC. Pssm-ID: 411409 [Multi-domain] Cd Length: 648 Bit Score: 50.08 E-value: 1.26e-05
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KxYKxGKxW_sig | pfam19258 | KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as ... |
5-40 | 1.81e-05 | ||||||||||||
KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK signal peptide. Pssm-ID: 466014 [Multi-domain] Cd Length: 41 Bit Score: 43.25 E-value: 1.81e-05
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PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
71-283 | 5.97e-05 | ||||||||||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 47.70 E-value: 5.97e-05
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PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
1334-1491 | 1.83e-04 | ||||||||||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 46.16 E-value: 1.83e-04
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PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
159-289 | 1.98e-04 | ||||||||||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 46.16 E-value: 1.98e-04
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KxYKxGKxW | TIGR03715 | KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as ... |
9-29 | 2.75e-04 | ||||||||||||
KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus. Pssm-ID: 274741 [Multi-domain] Cd Length: 23 Bit Score: 39.29 E-value: 2.75e-04
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
260-305 | 8.72e-04 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 38.68 E-value: 8.72e-04
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PspC_relate_1 | NF033840 | PspC-related protein choline-binding protein 1; Members of this family share C-terminal ... |
1177-1312 | 1.83e-03 | ||||||||||||
PspC-related protein choline-binding protein 1; Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC. Pssm-ID: 411409 [Multi-domain] Cd Length: 648 Bit Score: 42.76 E-value: 1.83e-03
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Name | Accession | Description | Interval | E-value | ||||||||||||
Glyco_hydro_70 | pfam02324 | Glycosyl hydrolase family 70; Members of this family belong to glycosyl hydrolase family 70 ... |
370-1169 | 0e+00 | ||||||||||||
Glycosyl hydrolase family 70; Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain. Pssm-ID: 426720 [Multi-domain] Cd Length: 831 Bit Score: 1009.20 E-value: 0e+00
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
971-1455 | 5.89e-22 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 101.49 E-value: 5.89e-22
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
1132-1526 | 4.03e-21 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 98.79 E-value: 4.03e-21
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
167-219 | 3.46e-17 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 76.79 E-value: 3.46e-17
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
1194-1255 | 1.52e-16 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 75.25 E-value: 1.52e-16
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
1258-1321 | 1.65e-16 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 74.86 E-value: 1.65e-16
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
159-283 | 3.15e-16 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 83.38 E-value: 3.15e-16
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
1324-1405 | 1.28e-15 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 72.55 E-value: 1.28e-15
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
159-281 | 1.92e-14 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 77.99 E-value: 1.92e-14
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
176-216 | 1.31e-11 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 60.63 E-value: 1.31e-11
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
251-312 | 2.79e-10 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 57.53 E-value: 2.79e-10
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
1333-1376 | 5.01e-10 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 56.01 E-value: 5.01e-10
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AmyAc_bac_fung_AmyA | cd11318 | Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1, ... |
947-1026 | 5.39e-09 | ||||||||||||
Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase); AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes bacterial and fungal proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Pssm-ID: 200457 [Multi-domain] Cd Length: 391 Bit Score: 60.22 E-value: 5.39e-09
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AmyAc_arch_bac_plant_AmyA | cd11314 | Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also ... |
932-1026 | 7.95e-09 | ||||||||||||
Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase); AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Pssm-ID: 200453 [Multi-domain] Cd Length: 302 Bit Score: 58.77 E-value: 7.95e-09
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PRK09441 | PRK09441 | cytoplasmic alpha-amylase; Reviewed |
494-839 | 6.49e-08 | ||||||||||||
cytoplasmic alpha-amylase; Reviewed Pssm-ID: 236518 [Multi-domain] Cd Length: 479 Bit Score: 56.82 E-value: 6.49e-08
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
208-261 | 7.90e-08 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 50.60 E-value: 7.90e-08
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PRK09441 | PRK09441 | cytoplasmic alpha-amylase; Reviewed |
947-1026 | 8.33e-08 | ||||||||||||
cytoplasmic alpha-amylase; Reviewed Pssm-ID: 236518 [Multi-domain] Cd Length: 479 Bit Score: 56.82 E-value: 8.33e-08
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
1270-1312 | 9.52e-08 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 49.85 E-value: 9.52e-08
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
1110-1522 | 4.39e-07 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 54.49 E-value: 4.39e-07
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glucan_65_rpt | TIGR04035 | glucan-binding repeat; This model describes a region of about 63 amino acids that is composed ... |
1410-1471 | 1.16e-06 | ||||||||||||
glucan-binding repeat; This model describes a region of about 63 amino acids that is composed of three repeats of a more broadly distributed family of shorter repeats modeled by pfam01473. While the shorter repeats are often associated with choline binding (and therefore with cell wall binding), the longer repeat described here represents a subgroup of repeat sequences associated with glucan binding, as found in a number glycosylhydrolases. Shah, et al. describe a repeat consensus, WYYFDANGKAVTGAQTINGQTLYFDQDGKQVKG, that corresponds to half of the repeat as modeled here and one and a half copies of the repeat as modeled by pfam01473. Pssm-ID: 274933 [Multi-domain] Cd Length: 62 Bit Score: 47.13 E-value: 1.16e-06
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PspC_relate_1 | NF033840 | PspC-related protein choline-binding protein 1; Members of this family share C-terminal ... |
1332-1490 | 1.71e-06 | ||||||||||||
PspC-related protein choline-binding protein 1; Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC. Pssm-ID: 411409 [Multi-domain] Cd Length: 648 Bit Score: 52.78 E-value: 1.71e-06
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PspC_relate_1 | NF033840 | PspC-related protein choline-binding protein 1; Members of this family share C-terminal ... |
1291-1414 | 2.62e-06 | ||||||||||||
PspC-related protein choline-binding protein 1; Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC. Pssm-ID: 411409 [Multi-domain] Cd Length: 648 Bit Score: 52.01 E-value: 2.62e-06
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AmyAc_family | cd00551 | Alpha amylase catalytic domain family; The Alpha-amylase family comprises the largest family ... |
947-1027 | 4.06e-06 | ||||||||||||
Alpha amylase catalytic domain family; The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Pssm-ID: 200451 [Multi-domain] Cd Length: 260 Bit Score: 50.25 E-value: 4.06e-06
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PspC_relate_1 | NF033840 | PspC-related protein choline-binding protein 1; Members of this family share C-terminal ... |
135-289 | 1.26e-05 | ||||||||||||
PspC-related protein choline-binding protein 1; Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC. Pssm-ID: 411409 [Multi-domain] Cd Length: 648 Bit Score: 50.08 E-value: 1.26e-05
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KxYKxGKxW_sig | pfam19258 | KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as ... |
5-40 | 1.81e-05 | ||||||||||||
KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK signal peptide. Pssm-ID: 466014 [Multi-domain] Cd Length: 41 Bit Score: 43.25 E-value: 1.81e-05
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PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
71-283 | 5.97e-05 | ||||||||||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 47.70 E-value: 5.97e-05
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
1254-1292 | 9.16e-05 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 41.37 E-value: 9.16e-05
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PLN00196 | PLN00196 | alpha-amylase; Provisional |
916-1026 | 1.52e-04 | ||||||||||||
alpha-amylase; Provisional Pssm-ID: 165762 [Multi-domain] Cd Length: 428 Bit Score: 46.06 E-value: 1.52e-04
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PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
1334-1491 | 1.83e-04 | ||||||||||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 46.16 E-value: 1.83e-04
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PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
159-289 | 1.98e-04 | ||||||||||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 46.16 E-value: 1.98e-04
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KxYKxGKxW | TIGR03715 | KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as ... |
9-29 | 2.75e-04 | ||||||||||||
KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus. Pssm-ID: 274741 [Multi-domain] Cd Length: 23 Bit Score: 39.29 E-value: 2.75e-04
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PLN02784 | PLN02784 | alpha-amylase |
978-1026 | 4.22e-04 | ||||||||||||
alpha-amylase Pssm-ID: 215419 [Multi-domain] Cd Length: 894 Bit Score: 45.00 E-value: 4.22e-04
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AmyAc_bac_fung_AmyA | cd11318 | Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1, ... |
494-761 | 8.62e-04 | ||||||||||||
Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase); AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes bacterial and fungal proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Pssm-ID: 200457 [Multi-domain] Cd Length: 391 Bit Score: 43.66 E-value: 8.62e-04
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
260-305 | 8.72e-04 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 38.68 E-value: 8.72e-04
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
1418-1465 | 1.09e-03 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 38.29 E-value: 1.09e-03
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PRK12313 | PRK12313 | 1,4-alpha-glucan branching protein GlgB; |
993-1027 | 1.14e-03 | ||||||||||||
1,4-alpha-glucan branching protein GlgB; Pssm-ID: 237052 [Multi-domain] Cd Length: 633 Bit Score: 43.35 E-value: 1.14e-03
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
1203-1270 | 1.24e-03 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 37.91 E-value: 1.24e-03
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COG5263 | COG5263 | Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; |
42-296 | 1.61e-03 | ||||||||||||
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism]; Pssm-ID: 444077 [Multi-domain] Cd Length: 486 Bit Score: 42.94 E-value: 1.61e-03
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PspC_relate_1 | NF033840 | PspC-related protein choline-binding protein 1; Members of this family share C-terminal ... |
1177-1312 | 1.83e-03 | ||||||||||||
PspC-related protein choline-binding protein 1; Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC. Pssm-ID: 411409 [Multi-domain] Cd Length: 648 Bit Score: 42.76 E-value: 1.83e-03
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PRK03705 | PRK03705 | glycogen debranching protein GlgX; |
952-1026 | 4.92e-03 | ||||||||||||
glycogen debranching protein GlgX; Pssm-ID: 235152 [Multi-domain] Cd Length: 658 Bit Score: 41.55 E-value: 4.92e-03
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Choline_bind_3 | pfam19127 | Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to ... |
218-261 | 6.38e-03 | ||||||||||||
Choline-binding repeat; Pair of presumed choline-binding repeats often found adjacent to pfam01473. Pssm-ID: 465978 [Multi-domain] Cd Length: 47 Bit Score: 35.98 E-value: 6.38e-03
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AmyAc_SLC3A1 | cd11359 | Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins; SLC3A1, ... |
947-1047 | 7.93e-03 | ||||||||||||
Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins; SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Pssm-ID: 200494 [Multi-domain] Cd Length: 456 Bit Score: 40.42 E-value: 7.93e-03
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PRK05402 | PRK05402 | 1,4-alpha-glucan branching protein GlgB; |
993-1027 | 9.03e-03 | ||||||||||||
1,4-alpha-glucan branching protein GlgB; Pssm-ID: 235445 [Multi-domain] Cd Length: 726 Bit Score: 40.55 E-value: 9.03e-03
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Blast search parameters | ||||
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