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Conserved domains on  [gi|398365807|ref|NP_009825|]
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Rei1p [Saccharomyces cerevisiae S288C]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 10579336)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0003677|GO:0008270|GO:0003700
PubMed:  11179890|12665246|11361095|10940247
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-C2H2_2 pfam12756
C2H2 type zinc-finger (2 copies); This family contains two copies of a C2H2-like zinc finger ...
 164-263 3.75e-50

C2H2 type zinc-finger (2 copies); This family contains two copies of a C2H2-like zinc finger domain.


:

Pssm-ID: 463690  Cd Length: 98  Bit Score: 164.00  E-value: 3.75e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365807  164 CLFCEHnkHFKDVEENLEHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQGRTLTAVRQHMLAKRHCKIP 243
Cdd:pfam12756   1 CLFCGH--TSSTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIGLGNECLYCGKQFKSLEALRQHMRDKGHCKIP 78

                          90       100
                  ....*....|....*....|
gi 398365807  244 YESEDERLEISEFYDFTSSY 263
Cdd:pfam12756  79 YESEEEWLEIAEFYDFSSSY 98
PTZ00448 super family cl29187
hypothetical protein; Provisional
 9-50 4.47e-04

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PTZ00448:

Pssm-ID: 185627 [Multi-domain]  Cd Length: 373  Bit Score: 41.94  E-value: 4.47e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 398365807   9 CNSCVLTFDSSDEQRAHMKSDWHRYNLKRRVAQLPPISFETF 50
Cdd:PTZ00448 317 CRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEF 358
 
Name Accession Description Interval E-value
zf-C2H2_2 pfam12756
C2H2 type zinc-finger (2 copies); This family contains two copies of a C2H2-like zinc finger ...
 164-263 3.75e-50

C2H2 type zinc-finger (2 copies); This family contains two copies of a C2H2-like zinc finger domain.


Pssm-ID: 463690  Cd Length: 98  Bit Score: 164.00  E-value: 3.75e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365807  164 CLFCEHnkHFKDVEENLEHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQGRTLTAVRQHMLAKRHCKIP 243
Cdd:pfam12756   1 CLFCGH--TSSTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIGLGNECLYCGKQFKSLEALRQHMRDKGHCKIP 78

                          90       100
                  ....*....|....*....|
gi 398365807  244 YESEDERLEISEFYDFTSSY 263
Cdd:pfam12756  79 YESEEEWLEIAEFYDFSSSY 98
PTZ00448 PTZ00448
hypothetical protein; Provisional
 9-50 4.47e-04

hypothetical protein; Provisional


Pssm-ID: 185627 [Multi-domain]  Cd Length: 373  Bit Score: 41.94  E-value: 4.47e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 398365807   9 CNSCVLTFDSSDEQRAHMKSDWHRYNLKRRVAQLPPISFETF 50
Cdd:PTZ00448 317 CRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEF 358
 
Name Accession Description Interval E-value
zf-C2H2_2 pfam12756
C2H2 type zinc-finger (2 copies); This family contains two copies of a C2H2-like zinc finger ...
 164-263 3.75e-50

C2H2 type zinc-finger (2 copies); This family contains two copies of a C2H2-like zinc finger domain.


Pssm-ID: 463690  Cd Length: 98  Bit Score: 164.00  E-value: 3.75e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365807  164 CLFCEHnkHFKDVEENLEHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQGRTLTAVRQHMLAKRHCKIP 243
Cdd:pfam12756   1 CLFCGH--TSSTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIGLGNECLYCGKQFKSLEALRQHMRDKGHCKIP 78

                          90       100
                  ....*....|....*....|
gi 398365807  244 YESEDERLEISEFYDFTSSY 263
Cdd:pfam12756  79 YESEEEWLEIAEFYDFSSSY 98
PTZ00448 PTZ00448
hypothetical protein; Provisional
 9-50 4.47e-04

hypothetical protein; Provisional


Pssm-ID: 185627 [Multi-domain]  Cd Length: 373  Bit Score: 41.94  E-value: 4.47e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 398365807   9 CNSCVLTFDSSDEQRAHMKSDWHRYNLKRRVAQLPPISFETF 50
Cdd:PTZ00448 317 CRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEF 358
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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