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Conserved domains on  [gi|397776133|ref|YP_006546265|]
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2C [Pasivirus A1]

Protein Classification

RNA helicase domain-containing protein( domain architecture ID 10468696)

RNA helicase domain-containing protein may be involved in duplex unwinding during viral RNA replication

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 136-238 4.32e-41

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


:

Pssm-ID: 459992  Cd Length: 102  Bit Score: 138.89  E-value: 4.32e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 397776133  136 VLLRGEPGQGKSFMTHLLVRSVCNAMGWKvSESVFSHPTSSEFFDGYAGQPIHLIDDFGQNVEEPEYKVLCQCMSSIPFS 215
Cdd:pfam00910   1 IWLYGPPGCGKSTLAKYLARALLKKLGLP-KDSVYSRNPDDDFWDGYTGQPVVIIDDFGQNPDGPDEAELIRLVSSTPYP 79

                          90       100
                  ....*....|....*....|...
gi 397776133  216 VPMASLEEKGLPYTSKLVIATTN 238
Cdd:pfam00910  80 PPMAALEEKGTPFTSKFVIVTSN 102
 
Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 136-238 4.32e-41

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 138.89  E-value: 4.32e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 397776133  136 VLLRGEPGQGKSFMTHLLVRSVCNAMGWKvSESVFSHPTSSEFFDGYAGQPIHLIDDFGQNVEEPEYKVLCQCMSSIPFS 215
Cdd:pfam00910   1 IWLYGPPGCGKSTLAKYLARALLKKLGLP-KDSVYSRNPDDDFWDGYTGQPVVIIDDFGQNPDGPDEAELIRLVSSTPYP 79

                          90       100
                  ....*....|....*....|...
gi 397776133  216 VPMASLEEKGLPYTSKLVIATTN 238
Cdd:pfam00910  80 PPMAALEEKGTPFTSKFVIVTSN 102
 
Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 136-238 4.32e-41

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 138.89  E-value: 4.32e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 397776133  136 VLLRGEPGQGKSFMTHLLVRSVCNAMGWKvSESVFSHPTSSEFFDGYAGQPIHLIDDFGQNVEEPEYKVLCQCMSSIPFS 215
Cdd:pfam00910   1 IWLYGPPGCGKSTLAKYLARALLKKLGLP-KDSVYSRNPDDDFWDGYTGQPVVIIDDFGQNPDGPDEAELIRLVSSTPYP 79

                          90       100
                  ....*....|....*....|...
gi 397776133  216 VPMASLEEKGLPYTSKLVIATTN 238
Cdd:pfam00910  80 PPMAALEEKGTPFTSKFVIVTSN 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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