NCBI Conserved Domain Search

Conserved domains on [gi|394338894|gb|AFN28391|]

View

pleiomorphic adenoma protein-like 2 protein, partial [Paralichthys dentatus]

Protein Classification

zinc finger family protein( domain architecture ID 706824)

zinc finger family protein may be involved in transcriptional regulation; similar to Schizosaccharomyces pombe E3 ubiquitin-protein ligase hel2, which that plays a key role in the ribosome quality control (RQC), and Homo sapiens histone H4 transcription factor

Gene Ontology: GO:0008270

PubMed: 11179890

Graphical summary

Zoom to residue level

show extra options »

Show site features Horizontal zoom: ×

List of domain hits

Name

Accession

Description

Interval

E-value

COG5236 super family

cl28715

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

11-126

5.21e-04

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

The actual alignment was detected with superfamily member COG5236:

Pssm-ID: 227561 [Multi-domain] Cd Length: 493 Bit Score: 40.39 E-value: 5.21e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394338894  11 FKCEECGKHYNTKlGYKRHMAMHSATAGDLTCKVCMQSYESTPVLLE-----HLKSHSGKSSGGTKEKKHP-CDHCDRRF 84
Cdd:COG5236  152 FKCPKSKCHRRCG-SLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRlfrssTLRDHKNGGLEEEGFKGHPlCIFCKIYF 230

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 394338894  85 YTRKDVRRHMVVHTGRkdflCQYC-------AQRFGRKDHLTRHVKKSH 126
Cdd:COG5236  231 YDDDELRRHCRLRHEA----CHICdmvgpirYQYFKSYEDLEAHFRNAH 275

Name

Accession

Description

Interval

E-value

COG5236

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

11-126

5.21e-04

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

Pssm-ID: 227561 [Multi-domain] Cd Length: 493 Bit Score: 40.39 E-value: 5.21e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394338894  11 FKCEECGKHYNTKlGYKRHMAMHSATAGDLTCKVCMQSYESTPVLLE-----HLKSHSGKSSGGTKEKKHP-CDHCDRRF 84
Cdd:COG5236  152 FKCPKSKCHRRCG-SLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRlfrssTLRDHKNGGLEEEGFKGHPlCIFCKIYF 230

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 394338894  85 YTRKDVRRHMVVHTGRkdflCQYC-------AQRFGRKDHLTRHVKKSH 126
Cdd:COG5236  231 YDDDELRRHCRLRHEA----CHICdmvgpirYQYFKSYEDLEAHFRNAH 275

Name

Accession

Description

Interval

E-value

COG5236

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

11-126

5.21e-04

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];

Pssm-ID: 227561 [Multi-domain] Cd Length: 493 Bit Score: 40.39 E-value: 5.21e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394338894  11 FKCEECGKHYNTKlGYKRHMAMHSATAGDLTCKVCMQSYESTPVLLE-----HLKSHSGKSSGGTKEKKHP-CDHCDRRF 84
Cdd:COG5236  152 FKCPKSKCHRRCG-SLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRlfrssTLRDHKNGGLEEEGFKGHPlCIFCKIYF 230

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 394338894  85 YTRKDVRRHMVVHTGRkdflCQYC-------AQRFGRKDHLTRHVKKSH 126
Cdd:COG5236  231 YDDDELRRHCRLRHEA----CHICdmvgpirYQYFKSYEDLEAHFRNAH 275

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01