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Conserved domains on  [gi|394268551|gb|EJE13107|]
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hypothetical protein HMPREF9981_00296 [Staphylococcus epidermidis NIHLM020]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4889 super family cl24714
Domain of unknown function (DUF4889); This family consists of uncharacterized proteins around ...
 39-109 3.99e-29

Domain of unknown function (DUF4889); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various Staphylococcus aureus species. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam16230:

Pssm-ID: 406604  Cd Length: 71  Bit Score: 100.05  E-value: 3.99e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 394268551   39 MKDSTTIDKMINTKNEKIEKNVELPKDANVSVKKEDFVMLFKDEKTGKITKVKKVNHDDVPHGLMSKIHDM 109
Cdd:pfam16230   1 MKDNTTIEKMISEKDELIEKNVKLPPDNDVKVKKGDFVKLVKKDDGKKIYKVKKVKHDDVPHGLMMKIHDM 71
 
Name Accession Description Interval E-value
DUF4889 pfam16230
Domain of unknown function (DUF4889); This family consists of uncharacterized proteins around ...
 39-109 3.99e-29

Domain of unknown function (DUF4889); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various Staphylococcus aureus species. The function of this family is unknown.


Pssm-ID: 406604  Cd Length: 71  Bit Score: 100.05  E-value: 3.99e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 394268551   39 MKDSTTIDKMINTKNEKIEKNVELPKDANVSVKKEDFVMLFKDEKTGKITKVKKVNHDDVPHGLMSKIHDM 109
Cdd:pfam16230   1 MKDNTTIEKMISEKDELIEKNVKLPPDNDVKVKKGDFVKLVKKDDGKKIYKVKKVKHDDVPHGLMMKIHDM 71
 
Name Accession Description Interval E-value
DUF4889 pfam16230
Domain of unknown function (DUF4889); This family consists of uncharacterized proteins around ...
 39-109 3.99e-29

Domain of unknown function (DUF4889); This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various Staphylococcus aureus species. The function of this family is unknown.


Pssm-ID: 406604  Cd Length: 71  Bit Score: 100.05  E-value: 3.99e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 394268551   39 MKDSTTIDKMINTKNEKIEKNVELPKDANVSVKKEDFVMLFKDEKTGKITKVKKVNHDDVPHGLMSKIHDM 109
Cdd:pfam16230   1 MKDNTTIEKMISEKDELIEKNVKLPPDNDVKVKKGDFVKLVKKDDGKKIYKVKKVKHDDVPHGLMMKIHDM 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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