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Conserved domains on  [gi|394268424|gb|EJE12982|]
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staphylococcal secretory antigen SsaA, partial [Staphylococcus epidermidis NIHLM020]

Protein Classification

CHAP domain-containing protein( domain architecture ID 11467641)

cysteine, histidine-dependent amidohydrolase/peptidase (CHAP) domain-containing protein may function as an amidase involved in the cleavage of peptidoglycan

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
139-248 1.25e-27

Surface antigen [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 102.76  E-value: 1.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394268424 139 SAPSSNGVSLSNARSASGNLYTSGQCTYYVFDRV---GGKIGSTWGNANNWANAAARSGYTVNNSPAKGAILQT---SQG 212
Cdd:COG3942    1 ARAASLGDGYPPNVVDPWNGYPYGQCTWYAAWRRaqlGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFtpgVAG 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 394268424 213 AYGHVAYVEGVNSNGSIRVSEMNYGhGAGVVTSRTI 248
Cdd:COG3942   81 PYGHVAVVESVNSDGSILVSEMNWG-GPGIYSTRTI 115
 
Name Accession Description Interval E-value
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
139-248 1.25e-27

Surface antigen [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 102.76  E-value: 1.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394268424 139 SAPSSNGVSLSNARSASGNLYTSGQCTYYVFDRV---GGKIGSTWGNANNWANAAARSGYTVNNSPAKGAILQT---SQG 212
Cdd:COG3942    1 ARAASLGDGYPPNVVDPWNGYPYGQCTWYAAWRRaqlGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFtpgVAG 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 394268424 213 AYGHVAYVEGVNSNGSIRVSEMNYGhGAGVVTSRTI 248
Cdd:COG3942   81 PYGHVAVVESVNSDGSILVSEMNWG-GPGIYSTRTI 115
PRK08581 PRK08581
amidase domain-containing protein;
159-248 3.02e-14

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 71.74  E-value: 3.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394268424 159 YTSGQCTYYVFDRV---GGKIGSTWGNANNWANAAARSGYTVNNSPAKGAIL------QTSQGAYGHVAYVEGVNSNGSI 229
Cdd:PRK08581 508 YPHGQCTWYVYNRMkqfGTSISGDLGDAHNWNNRAQARGYQVSHTPKRHAAVvfeagqAGADQHYGHVAFVEKVNSDGSI 587
                         90
                 ....*....|....*....
gi 394268424 230 RVSEMNYgHGAGVVTSRTI 248
Cdd:PRK08581 588 VISESNV-KGLGIISYRTI 605
CHAP pfam05257
CHAP domain; This domain corresponds to an amidase function. Many of these proteins are ...
156-235 8.43e-10

CHAP domain; This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Swiss:P43675, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.


Pssm-ID: 461605 [Multi-domain]  Cd Length: 83  Bit Score: 53.96  E-value: 8.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394268424  156 GNLYTSGQCTYYVFDRVGgKIGSTWGNANNWANAAARSGYTVNNSPAKGAILQTSQG----AYGHVAYVEGVNsNGSIRV 231
Cdd:pfam05257   2 GNGYPWGQCTWFVYWRVA-QLGIYLGNAGDWADAAAGAYKVGSTTPKVGDIVVFDPGgggaSYGHVAIVEKVN-DGSITV 79

                  ....
gi 394268424  232 SEMN 235
Cdd:pfam05257  80 SEQN 83
 
Name Accession Description Interval E-value
COG3942 COG3942
Surface antigen [Cell wall/membrane/envelope biogenesis];
139-248 1.25e-27

Surface antigen [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443142 [Multi-domain]  Cd Length: 129  Bit Score: 102.76  E-value: 1.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394268424 139 SAPSSNGVSLSNARSASGNLYTSGQCTYYVFDRV---GGKIGSTWGNANNWANAAARSGYTVNNSPAKGAILQT---SQG 212
Cdd:COG3942    1 ARAASLGDGYPPNVVDPWNGYPYGQCTWYAAWRRaqlGGPIGSGWGNANNWADNARAAGYTVGSTPKVGAVAVFtpgVAG 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 394268424 213 AYGHVAYVEGVNSNGSIRVSEMNYGhGAGVVTSRTI 248
Cdd:COG3942   81 PYGHVAVVESVNSDGSILVSEMNWG-GPGIYSTRTI 115
PRK08581 PRK08581
amidase domain-containing protein;
159-248 3.02e-14

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 71.74  E-value: 3.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394268424 159 YTSGQCTYYVFDRV---GGKIGSTWGNANNWANAAARSGYTVNNSPAKGAIL------QTSQGAYGHVAYVEGVNSNGSI 229
Cdd:PRK08581 508 YPHGQCTWYVYNRMkqfGTSISGDLGDAHNWNNRAQARGYQVSHTPKRHAAVvfeagqAGADQHYGHVAFVEKVNSDGSI 587
                         90
                 ....*....|....*....
gi 394268424 230 RVSEMNYgHGAGVVTSRTI 248
Cdd:PRK08581 588 VISESNV-KGLGIISYRTI 605
CHAP pfam05257
CHAP domain; This domain corresponds to an amidase function. Many of these proteins are ...
156-235 8.43e-10

CHAP domain; This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Swiss:P43675, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.


Pssm-ID: 461605 [Multi-domain]  Cd Length: 83  Bit Score: 53.96  E-value: 8.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 394268424  156 GNLYTSGQCTYYVFDRVGgKIGSTWGNANNWANAAARSGYTVNNSPAKGAILQTSQG----AYGHVAYVEGVNsNGSIRV 231
Cdd:pfam05257   2 GNGYPWGQCTWFVYWRVA-QLGIYLGNAGDWADAAAGAYKVGSTTPKVGDIVVFDPGgggaSYGHVAIVEKVN-DGSITV 79

                  ....
gi 394268424  232 SEMN 235
Cdd:pfam05257  80 SEQN 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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