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Conserved domains on  [gi|393715131]
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Chain A, LINE-1 type transposase domain-containing protein 1

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tnp_22_dsRBD super family cl38762
L1 transposable element dsRBD-like domain; This entry represents the double stranded ...
 18-82 1.44e-15

L1 transposable element dsRBD-like domain; This entry represents the double stranded RNA-binding-like domain.


The actual alignment was detected with superfamily member pfam17490:

Pssm-ID: 407521  Cd Length: 65  Bit Score: 64.35  E-value: 1.44e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 393715131  18 SATLDISKQWSNVFNILRENDFEPKFLCEVKLAFKCDGEIKTFSDLQSLRKFASQKSSMKELLKD 82
Cdd:pfam17490  1 AETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFIDKQ*LRDFVTTRPALKELLKE 65
 
Name Accession Description Interval E-value
Tnp_22_dsRBD pfam17490
L1 transposable element dsRBD-like domain; This entry represents the double stranded ...
 18-82 1.44e-15

L1 transposable element dsRBD-like domain; This entry represents the double stranded RNA-binding-like domain.


Pssm-ID: 407521  Cd Length: 65  Bit Score: 64.35  E-value: 1.44e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 393715131  18 SATLDISKQWSNVFNILRENDFEPKFLCEVKLAFKCDGEIKTFSDLQSLRKFASQKSSMKELLKD 82
Cdd:pfam17490  1 AETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFIDKQ*LRDFVTTRPALKELLKE 65
 
Name Accession Description Interval E-value
Tnp_22_dsRBD pfam17490
L1 transposable element dsRBD-like domain; This entry represents the double stranded ...
 18-82 1.44e-15

L1 transposable element dsRBD-like domain; This entry represents the double stranded RNA-binding-like domain.


Pssm-ID: 407521  Cd Length: 65  Bit Score: 64.35  E-value: 1.44e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 393715131  18 SATLDISKQWSNVFNILRENDFEPKFLCEVKLAFKCDGEIKTFSDLQSLRKFASQKSSMKELLKD 82
Cdd:pfam17490  1 AETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFIDKQ*LRDFVTTRPALKELLKE 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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