NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|392284570|gb|AFM54998|]
View 

DNA primase [Mycobacterium phage Astro]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-CHC2 super family cl21601
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 30-83 1.85e-16

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


The actual alignment was detected with superfamily member smart00400:

Pssm-ID: 451328 [Multi-domain]  Cd Length: 55  Bit Score: 68.09  E-value: 1.85e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 392284570    30 SCLCPFHGDTNKSASISFELNAFNCFVCGVKGDAIKVIRQREEVTFAEAKRIAE 83
Cdd:smart00400   2 KGLCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDKLSFVEAVKKLA 55
 
Name Accession Description Interval E-value
ZnF_CHCC smart00400
zinc finger;
30-83 1.85e-16

zinc finger;


Pssm-ID: 128681 [Multi-domain]  Cd Length: 55  Bit Score: 68.09  E-value: 1.85e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 392284570    30 SCLCPFHGDTNKSASISFELNAFNCFVCGVKGDAIKVIRQREEVTFAEAKRIAE 83
Cdd:smart00400   2 KGLCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDKLSFVEAVKKLA 55
DnaG COG0358
DNA primase (bacterial type) [Replication, recombination and repair];
7-103 3.79e-11

DNA primase (bacterial type) [Replication, recombination and repair];


Pssm-ID: 440127 [Multi-domain]  Cd Length: 465  Bit Score: 59.00  E-value: 3.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392284570   7 IVKVIRRYFSdweaPKPTRSKWtSCLCPFHGDTNKSASISFELNAFNCFVCGVKGDAIKVIRQREEVTFAEA-KRIAE-- 83
Cdd:COG0358   16 IVDVIGEYVK----LKKAGRNY-KGLCPFHDEKTPSFTVSPEKQFYHCFGCGAGGDVISFLMEYEGLSFPEAvEELAEra 90

                         90       100
                 ....*....|....*....|..
gi 392284570  84 --SLSEGSDGSVSSQPARKSSR 103
Cdd:COG0358   91 giELPEEEGSPEEREEASERER 112
zf-CHC2 pfam01807
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 7-78 6.36e-11

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


Pssm-ID: 426447 [Multi-domain]  Cd Length: 95  Bit Score: 54.95  E-value: 6.36e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392284570    7 IVKVIRRYF------SDWEApkptrskwtscLCPFHGDTNKSASISFELNAFNCFVCGVKGDAIKVIRQREEVTFAEA 78
Cdd:pfam01807  14 IVDVVGQYVklkkrgKDYVG-----------LCPFHHEKTPSFTVSPDKQFYHCFGCGAGGDVIKFLMKIEKLSFVEA 80
 
Name Accession Description Interval E-value
ZnF_CHCC smart00400
zinc finger;
30-83 1.85e-16

zinc finger;


Pssm-ID: 128681 [Multi-domain]  Cd Length: 55  Bit Score: 68.09  E-value: 1.85e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 392284570    30 SCLCPFHGDTNKSASISFELNAFNCFVCGVKGDAIKVIRQREEVTFAEAKRIAE 83
Cdd:smart00400   2 KGLCPFHGEKTPSFSVSPDKQFFHCFGCGAGGNVISFLMKYDKLSFVEAVKKLA 55
DnaG COG0358
DNA primase (bacterial type) [Replication, recombination and repair];
7-103 3.79e-11

DNA primase (bacterial type) [Replication, recombination and repair];


Pssm-ID: 440127 [Multi-domain]  Cd Length: 465  Bit Score: 59.00  E-value: 3.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392284570   7 IVKVIRRYFSdweaPKPTRSKWtSCLCPFHGDTNKSASISFELNAFNCFVCGVKGDAIKVIRQREEVTFAEA-KRIAE-- 83
Cdd:COG0358   16 IVDVIGEYVK----LKKAGRNY-KGLCPFHDEKTPSFTVSPEKQFYHCFGCGAGGDVISFLMEYEGLSFPEAvEELAEra 90

                         90       100
                 ....*....|....*....|..
gi 392284570  84 --SLSEGSDGSVSSQPARKSSR 103
Cdd:COG0358   91 giELPEEEGSPEEREEASERER 112
zf-CHC2 pfam01807
CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.
 7-78 6.36e-11

CHC2 zinc finger; This domain is principally involved in DNA binding in DNA primases.


Pssm-ID: 426447 [Multi-domain]  Cd Length: 95  Bit Score: 54.95  E-value: 6.36e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392284570    7 IVKVIRRYF------SDWEApkptrskwtscLCPFHGDTNKSASISFELNAFNCFVCGVKGDAIKVIRQREEVTFAEA 78
Cdd:pfam01807  14 IVDVVGQYVklkkrgKDYVG-----------LCPFHHEKTPSFTVSPDKQFYHCFGCGAGGDVIKFLMKIEKLSFVEA 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH