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Conserved domains on  [gi|390614978|gb|AFM16128|]
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5-(carboxyamino)imidazole ribonucleotide mutase [Mycolicibacterium chubuense NBB4]

Protein Classification

5-(carboxyamino)imidazole ribonucleotide mutase( domain architecture ID 10000490)

5-(carboxyamino)imidazole ribonucleotide mutase catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR), a step in de novo purine nucleotide biosynthesis

CATH:  3.40.50.7700
EC:  5.4.99.18
PubMed:  36748301|33179964
SCOP:  4003688

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PurE COG0041
Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; ...
3-163 1.25e-98

Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase is part of the Pathway/BioSystem: Purine biosynthesis


:

Pssm-ID: 439811  Cd Length: 161  Bit Score: 281.18  E-value: 1.25e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978   3 ARVGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLP 82
Cdd:COG0041    1 PKVGIIMGSDSDWPTMKKAAKILDEFGIPYEVRVVSAHRTPDRLFEYAKTAEERGLKVIIAGAGGAAHLPGMVAAKTTLP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978  83 VIGVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEEMVLAKDEALRKR 162
Cdd:COG0041   81 VIGVPVKSKALDGLDSLLSIVQMPPGVPVATVAIGGAKNAALLAAQILALKDPELAEKLKAYREEQTEKVLAKDEELQEK 160

                 .
gi 390614978 163 L 163
Cdd:COG0041  161 L 161
 
Name Accession Description Interval E-value
PurE COG0041
Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; ...
3-163 1.25e-98

Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439811  Cd Length: 161  Bit Score: 281.18  E-value: 1.25e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978   3 ARVGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLP 82
Cdd:COG0041    1 PKVGIIMGSDSDWPTMKKAAKILDEFGIPYEVRVVSAHRTPDRLFEYAKTAEERGLKVIIAGAGGAAHLPGMVAAKTTLP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978  83 VIGVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEEMVLAKDEALRKR 162
Cdd:COG0041   81 VIGVPVKSKALDGLDSLLSIVQMPPGVPVATVAIGGAKNAALLAAQILALKDPELAEKLKAYREEQTEKVLAKDEELQEK 160

                 .
gi 390614978 163 L 163
Cdd:COG0041  161 L 161
AIRC pfam00731
AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl) ...
5-150 2.34e-86

AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 459917  Cd Length: 147  Bit Score: 249.59  E-value: 2.34e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978    5 VGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLPVI 84
Cdd:pfam00731   1 VGIIMGSDSDLPVMKKAAKILKEFGIPYEVRVVSAHRTPERLLEYAKEAEERGLKVIIAGAGGAAHLPGMVAALTTLPVI 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 390614978   85 GVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEE 150
Cdd:pfam00731  81 GVPVKSSALDGLDSLLSIVQMPSGVPVATVAIGGAKNAALLAAQILALSDPELAEKLKEYREEMAE 146
PLN02948 PLN02948
phosphoribosylaminoimidazole carboxylase
2-159 1.59e-84

phosphoribosylaminoimidazole carboxylase


Pssm-ID: 178534 [Multi-domain]  Cd Length: 577  Bit Score: 258.84  E-value: 1.59e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978   2 SARVGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPL 81
Cdd:PLN02948 410 TPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPL 489
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 390614978  82 PVIGVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEEMVLAKDEAL 159
Cdd:PLN02948 490 PVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQEDMRDMVLEKAEKL 567
purE TIGR01162
phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole ...
5-160 2.46e-80

phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273474  Cd Length: 156  Bit Score: 234.82  E-value: 2.46e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978    5 VGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLPVI 84
Cdd:TIGR01162   1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKTAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 390614978   85 GVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEEMVLAKDEALR 160
Cdd:TIGR01162  81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKLE 156
AIRC smart01001
AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl) ...
3-152 1.26e-72

AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 214965  Cd Length: 152  Bit Score: 215.09  E-value: 1.26e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978     3 ARVGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLP 82
Cdd:smart01001   1 PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAEDRGIKVIIAGAGGAAHLPGVVAALTTLP 80
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 390614978    83 VIGVPVPLARLDGMDSLLSIVQMPAGVPVATVSIG--GARNAGLLAVRILGSADAALRERMASFQQGLEEMV 152
Cdd:smart01001  81 VIGVPVSSGYLGGLDSLLSIVQMPSGIPVATVAIGidGAFNAALLAAQILALNDPELAAKLAAYRINQTEEV 152
 
Name Accession Description Interval E-value
PurE COG0041
Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; ...
3-163 1.25e-98

Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439811  Cd Length: 161  Bit Score: 281.18  E-value: 1.25e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978   3 ARVGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLP 82
Cdd:COG0041    1 PKVGIIMGSDSDWPTMKKAAKILDEFGIPYEVRVVSAHRTPDRLFEYAKTAEERGLKVIIAGAGGAAHLPGMVAAKTTLP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978  83 VIGVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEEMVLAKDEALRKR 162
Cdd:COG0041   81 VIGVPVKSKALDGLDSLLSIVQMPPGVPVATVAIGGAKNAALLAAQILALKDPELAEKLKAYREEQTEKVLAKDEELQEK 160

                 .
gi 390614978 163 L 163
Cdd:COG0041  161 L 161
AIRC pfam00731
AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl) ...
5-150 2.34e-86

AIR carboxylase; Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 459917  Cd Length: 147  Bit Score: 249.59  E-value: 2.34e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978    5 VGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLPVI 84
Cdd:pfam00731   1 VGIIMGSDSDLPVMKKAAKILKEFGIPYEVRVVSAHRTPERLLEYAKEAEERGLKVIIAGAGGAAHLPGMVAALTTLPVI 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 390614978   85 GVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEE 150
Cdd:pfam00731  81 GVPVKSSALDGLDSLLSIVQMPSGVPVATVAIGGAKNAALLAAQILALSDPELAEKLKEYREEMAE 146
PLN02948 PLN02948
phosphoribosylaminoimidazole carboxylase
2-159 1.59e-84

phosphoribosylaminoimidazole carboxylase


Pssm-ID: 178534 [Multi-domain]  Cd Length: 577  Bit Score: 258.84  E-value: 1.59e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978   2 SARVGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPL 81
Cdd:PLN02948 410 TPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPL 489
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 390614978  82 PVIGVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEEMVLAKDEAL 159
Cdd:PLN02948 490 PVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQEDMRDMVLEKAEKL 567
purE TIGR01162
phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole ...
5-160 2.46e-80

phosphoribosylaminoimidazole carboxylase, PurE protein; Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273474  Cd Length: 156  Bit Score: 234.82  E-value: 2.46e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978    5 VGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLPVI 84
Cdd:TIGR01162   1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKTAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 390614978   85 GVPVPLARLDGMDSLLSIVQMPAGVPVATVSIGGARNAGLLAVRILGSADAALRERMASFQQGLEEMVLAKDEALR 160
Cdd:TIGR01162  81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYRENQKEEVLKKNKKLE 156
AIRC smart01001
AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl) ...
3-152 1.26e-72

AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.


Pssm-ID: 214965  Cd Length: 152  Bit Score: 215.09  E-value: 1.26e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390614978     3 ARVGLIMGSDSDWPVMSEAAEALAEFDVPFEVGVVSAHRTPARMLSYAQDAAGRGIGVIIAGAGGAAHLPGMVASATPLP 82
Cdd:smart01001   1 PLVGIIMGSTSDLPVMEEAAKTLEEFGIPYEVGVASAHRTPDRLFEYAKEAEDRGIKVIIAGAGGAAHLPGVVAALTTLP 80
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 390614978    83 VIGVPVPLARLDGMDSLLSIVQMPAGVPVATVSIG--GARNAGLLAVRILGSADAALRERMASFQQGLEEMV 152
Cdd:smart01001  81 VIGVPVSSGYLGGLDSLLSIVQMPSGIPVATVAIGidGAFNAALLAAQILALNDPELAAKLAAYRINQTEEV 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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