NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|38639884|ref|NP_943605|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Erpetoichthys calabaricus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-345 2.50e-152

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 431.92  E-value: 2.50e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFIQDMSSPV-STLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNiKPELLIILGLM 159
Cdd:MTH00135  81 TGQWDIQQMSHPLpTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPIL 239
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNTHPQTLNWNMKIT 319
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 38639884  320 -TPLPLSLMMMMTLTMLPITPTIISLF 345
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-345 2.50e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 431.92  E-value: 2.50e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFIQDMSSPV-STLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNiKPELLIILGLM 159
Cdd:MTH00135  81 TGQWDIQQMSHPLpTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPIL 239
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNTHPQTLNWNMKIT 319
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 38639884  320 -TPLPLSLMMMMTLTMLPITPTIISLF 345
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 2.01e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.15  E-value: 2.01e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    23 SSHWLLAWMGLEINTLAIIPLMT-NKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWYSGQWFIQDMSSPVST------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    96 ------LMTLAIAIKLGIAPMHFWLPEVMQGISI-NTGLILVTWQKLAPLAL-----LMQISHNIKPELLIILGLMSTII 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   164 GGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPA----LAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVN-----WS 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 38639884   235 KSPILAATSALALLSLGGLPPLSGFMPKWLIIQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-269 1.63e-13

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 70.92  E-value: 1.63e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   4 YILfvMLTSLgLGTTLTFTSSHWLLAWMGLEINTLAIIPL-MTNKHHPRAVEAATKYFLTQAAAAAILLF--ASIYNAwy 80
Cdd:COG1007 105 YAL--LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYgiSLLYGA-- 179

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  81 SGQWFIQDMSSPVST-------------LMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHN 147
Cdd:COG1007 180 TGSLNLAGIAAALAAgganspllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVE 259

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884 148 IKPEL-------LIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALA----MVNLFIYLIMTITMFM 216
Cdd:COG1007 260 AFPGLaadwqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFA 339

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 38639884 217 TFNLLNSP-----TINTLAVNWSKSPILAATSALALLSLGGLPPLSGFMPKWLIIQEL 269
Cdd:COG1007 340 VILLLSRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-295 5.08e-12

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 66.51  E-value: 5.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884     4 YILFVMLTSLGLGttLTFTSSHWLLAWMGLEINTLAIIPLMT-NKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWYSG 82
Cdd:TIGR01770 104 FYILLLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    83 QWFIQDMSSPVST-------------LMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQIS---- 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNgmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   146 ---HNIKPELLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWII-----SILHFMPALaMVNLFIYLIMTITMFMT 217
Cdd:TIGR01770 262 fgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILigllaGTLEGIKAV-LFYIFIYALMSLGAFGV 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   218 FNLLNSP------TINTLAVNWSKSPILAATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFF 291
Cdd:TIGR01770 341 LSLLRSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420


                  ....
gi 38639884   292 YLRL 295
Cdd:TIGR01770 421 YLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-345 2.50e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 431.92  E-value: 2.50e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFIQDMSSPV-STLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNiKPELLIILGLM 159
Cdd:MTH00135  81 TGQWDIQQMSHPLpTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPIL 239
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNTHPQTLNWNMKIT 319
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 38639884  320 -TPLPLSLMMMMTLTMLPITPTIISLF 345
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 5.84e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 372.33  E-value: 5.84e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFIQDMSSPVSTLM-TLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNIKPELLIILGLM 159
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMlTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPIL 239
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNTHPQTLNWNMKIT 319
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 38639884  320 TPLPLSLMMMMTLTMLPITPTIISLF 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-345 6.40e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 336.79  E-value: 6.40e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFIQDMSSPVS-TLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNIKPELLIILGLM 159
Cdd:MTH00112  81 TGQWDITQLTNPTScTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPIL 239
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNTHPQTLNWNMKIT 319
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 38639884  320 TPLPLSLMMMMTLTMLPITPTIISLF 345
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-319 4.10e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 327.19  E-value: 4.10e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFIQDMSSPV-STLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNIKPELLIILGLM 159
Cdd:MTH00105  81 SGQWTITKLTNPTaSTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPIL 239
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNTHPQTLNWNMKIT 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 3.50e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 284.17  E-value: 3.50e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFIQDMSSPVS-TLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNIKPELLIILGLM 159
Cdd:MTH00200  81 SGQWGISEMLGPLSeTLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPIL 239
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNTHPQTLNWNMKIT 319
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 38639884  320 TPLPLSLMMMMTLTMLPITPTIISLF 345
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-306 1.48e-72

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 228.66  E-value: 1.48e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFI-QDMSSPVSTLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNIKPELLIILGLM 159
Cdd:MTH00041  81 SGSWSInGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPIL 239
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPN 306
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 6.81e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 156.52  E-value: 6.81e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNawy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILN--- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 sgQWFIQDMSSPVSTLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALlmqISHNIKPELLIILGLMS 160
Cdd:MTH00160  79 --MLNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLIL---LSYLINNNFIIIIIILS 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  161 TIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPILA 240
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIK 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  241 ATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNthpqtLNWNMKITT 320
Cdd:MTH00160 234 FLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNK-----NKWNLKKKK 308

                        330       340
                 ....*....|....*....|....*
gi 38639884  321 PLPLSLMMMMTLTMLPITPTIISLF 345
Cdd:MTH00160 309 NKFSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-318 3.53e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 154.27  E-value: 3.53e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFiqdmsspVSTLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQI-SHNIKPELLIILGLM 159
Cdd:MTH00144  81 SFSWF-------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFlDLYWLAYLLCVISVL 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAvNWSKSPIL 239
Cdd:MTH00144 154 SALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKT 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 38639884  240 AATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSLSLTIMPNTHPQTLNWNMKI 318
Cdd:MTH00144 233 GLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-306 1.71e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 152.63  E-value: 1.71e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    1 MSPYILFVMlTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWY 80
Cdd:MTH00011   4 TFPTMFLFS-STMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQwfiqdMSSPVSTLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNIKPELLIILGLMS 160
Cdd:MTH00011  83 PSL-----LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  161 TIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPILA 240
Cdd:MTH00011 158 ALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTS 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38639884  241 ATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYSlSLTIMPN 306
Cdd:MTH00011 238 MSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPT 302
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-298 1.34e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 129.02  E-value: 1.34e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    7 FVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNawysgqWFI 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLS------FSN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   87 QDMSSPVSTLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNikPELLIILGLMSTIIGGW 166
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSS--FMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  167 GGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVNWSKSPILAATSALA 246
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 38639884  247 LLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFFYLRLSYS 298
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK 284
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 2.01e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.15  E-value: 2.01e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    23 SSHWLLAWMGLEINTLAIIPLMT-NKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWYSGQWFIQDMSSPVST------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    96 ------LMTLAIAIKLGIAPMHFWLPEVMQGISI-NTGLILVTWQKLAPLAL-----LMQISHNIKPELLIILGLMSTII 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   164 GGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPA----LAMVNLFIYLIMTITMFMTFNLLNSPTINTLAVN-----WS 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 38639884   235 KSPILAATSALALLSLGGLPPLSGFMPKWLIIQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-222 7.16e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 89.32  E-value: 7.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   15 LGTTLTFTSSHWLLAWMGLEINTLAIIPLM-TNKHHPRAVEAATKYFLTQAAAAAILLFASIY--------------NAW 79
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALlcgttgglhlsyinLVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   80 YSGQWFIQDMSSPVSTLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNIkpELLIILGLM 159
Cdd:MTH00196  84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNV--NILLIGGLF 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38639884  160 STIIGGWGGLNQTQIRKIMAYSSIAHLG---WIISILHFMPALA-MVNLFIYLIMTITMFMTFNLLN 222
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFESIQAsLVYLFIYIIMSICVFSIILALN 228
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 5-266 4.64e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 84.68  E-value: 4.64e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    5 ILFVMLTSLglgttLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHP-RAVEAATKYFLTQAAAAAILLFASIYNAWYSGQ 83
Cdd:MTH00199 103 ILIVALGSL-----LLVSSINWLSIYLAIELQTLTLFILVALKRDSaYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGE 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   84 WFIQDMSSPVS-----TLMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHNIKpeLLIILGL 158
Cdd:MTH00199 178 TSIQGINSILTgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAV 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  159 MSTIIGGWGGLNQTQIRKIMAYSSIAHLGWII---SILHFMPALA-MVNLFIYLIMTITMFMTFNLLN--SPTINTLAVN 232
Cdd:MTH00199 256 LSIIYGAIGALNQTKIKRLLAYSGIGHMGFILfgvAIGSFESIQAsLIYMIIYVIMSICSFSIILSLKltKGLIVEVSGL 335

                        250       260       270
                 ....*....|....*....|....*....|....
gi 38639884  233 WSKSPILAATSALALLSLGGLPPLSGFMPKWLII 266
Cdd:MTH00199 336 SRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-295 8.51e-14

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 71.78  E-value: 8.51e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    4 YILFVMLTSLGLGttLTFTSSHWLLAWMGLEINTLAIIPL-MTNKHHPRAVEAATKYFLTQAAAAAILLF--ASIYNawY 80
Cdd:PRK05777 105 FYLLVLFALLGMM--VMVSANDLLTLFLGLELLSLPLYALaALRRDRRRSLEAAIKYFVLGALASGFLLYgmSLLYG--A 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   81 SGQWFIQDMSSPVST-------------LMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHN 147
Cdd:PRK05777 181 TGSLSFAGIAKALADgsgnsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVV 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  148 IKPEL-------LIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWI----ISILHFMPALAMVNLFIYLIMTITMFM 216
Cdd:PRK05777 261 AFGGLsedwqqvLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglAAGTAEGYSAVLFYLLAYLFMTLGAFG 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  217 TFNLLNSP-----TINTLAVNWSKSPILAATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFF 291
Cdd:PRK05777 341 VISLLRRKggeaeSISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFY 420


                 ....
gi 38639884  292 YLRL 295
Cdd:PRK05777 421 YLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-269 1.63e-13

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 70.92  E-value: 1.63e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   4 YILfvMLTSLgLGTTLTFTSSHWLLAWMGLEINTLAIIPL-MTNKHHPRAVEAATKYFLTQAAAAAILLF--ASIYNAwy 80
Cdd:COG1007 105 YAL--LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYgiSLLYGA-- 179

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  81 SGQWFIQDMSSPVST-------------LMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQISHN 147
Cdd:COG1007 180 TGSLNLAGIAAALAAgganspllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVE 259

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884 148 IKPEL-------LIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALA----MVNLFIYLIMTITMFM 216
Cdd:COG1007 260 AFPGLaadwqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFA 339

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 38639884 217 TFNLLNSP-----TINTLAVNWSKSPILAATSALALLSLGGLPPLSGFMPKWLIIQEL 269
Cdd:COG1007 340 VILLLSRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 4-267 3.52e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 69.79  E-value: 3.52e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   4 YILFVMLTslgLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWYSGQ 83
Cdd:COG0651 110 YPLFLLLL---AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGT 186

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  84 WFIQDMSSPVST-----------LMTLAIAIKLGIAPMHFWLPE-----------VMQGISINTGL--ILVTWQKLAPLA 139
Cdd:COG0651 187 LNMADLAARLAEldpglllaafaLLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGAD 266

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884 140 LLMQISHnikpeLLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPALAMVNLFIYLI----MTITMF 215
Cdd:COG0651 267 PALFLGT-----LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLF 341

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 38639884 216 MTFNLL----NSPTINTLAVNWSKSPILAATSALALLSLGGLPPLSGFMPKWLIIQ 267
Cdd:COG0651 342 LAAGAIeratGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 7-190 1.21e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 68.73  E-value: 1.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    7 FVMLTSLGLGTTLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAV---------EAATKYFLTQAAAAAILLFA-SIY 76
Cdd:MTH00198 191 FALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcALY 270

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   77 NAWYSGQWFIQD-MSSPVST-------------LMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLM 142
Cdd:MTH00198 271 FGFTGNEGMLGTiLSATLETtnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLT 350

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 38639884  143 QIShnIKPELLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWII 190
Cdd:MTH00198 351 SLV--ITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-295 5.08e-12

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 66.51  E-value: 5.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884     4 YILFVMLTSLGLGttLTFTSSHWLLAWMGLEINTLAIIPLMT-NKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWYSG 82
Cdd:TIGR01770 104 FYILLLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    83 QWFIQDMSSPVST-------------LMTLAIAIKLGIAPMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQIS---- 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNgmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   146 ---HNIKPELLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWII-----SILHFMPALaMVNLFIYLIMTITMFMT 217
Cdd:TIGR01770 262 fgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILigllaGTLEGIKAV-LFYIFIYALMSLGAFGV 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   218 FNLLNSP------TINTLAVNWSKSPILAATSALALLSLGGLPPLSGFMPKWLIIQELTNQELAPTATLLALSALLSLFF 291
Cdd:TIGR01770 341 LSLLRSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420


                  ....
gi 38639884   292 YLRL 295
Cdd:TIGR01770 421 YLRV 424
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-190 2.89e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 58.03  E-value: 2.89e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    50 PRAVEAATKYFLTQAAAAAILLFASIYNAWYSG------QWFIQDMSSPVSTLMTLAI----AIKLGIAPMHFWLPEVMQ 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAFfiafAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   120 -----GISINTGLILvtwqKLAPLAL------LMQISHNIKPELLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGW 188
Cdd:TIGR01972 232 eaptaGSVILAGVLL----KMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGF 307


                  ..
gi 38639884   189 II 190
Cdd:TIGR01972 308 VL 309
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 6-189 1.99e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.24  E-value: 1.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    6 LFVMLtslglgttLTFTSSHWLLAWMGLEINTLAIIPLMTNKHHPRAVEAATKYFL------TQAAAAAILLFASIYNAW 79
Cdd:PRK06458 118 LFTML--------LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVM 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   80 YSGQ----W--FIQDMSSPVSTLMTLAIAI-------KLGIAPMHFWLPE-----------VMQGISINTGLILVTWQKL 135
Cdd:PRK06458 190 GDGEmailWteLLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI 269

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 38639884  136 aplaLLMQISHNIKPE-LLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWI 189
Cdd:PRK06458 270 ----LIDAAIGSDFPGrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-189 2.47e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 52.28  E-value: 2.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   44 MTNKHHPRAVEAATKYFLTQAAAAAILLFA--SIYNAWYS-----------GQWFIQDMSS----PVSTLMTLAIA---- 102
Cdd:PRK12667 154 AYYRDRGDAVEAAIKYALIGAVGTTLYFLAlaFLYATFGTlnmadlsakirGLSFPLTGGLagnpPLALGVALALAlwaf 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  103 -IKLGIAPMHFWLPEV-----------MQGISINTG---------LILVTWQKLAPLALLMQIshnikpeLLIILGLMST 161
Cdd:PRK12667 234 tIKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSP-------ILIILGAVSA 306

                        170       180
                 ....*....|....*....|....*...
gi 38639884  162 IIGGWGGLNQTQIRKIMAYSSIAHLGWI 189
Cdd:PRK12667 307 IIGALMMVVQKDVKRLLAYSTISHMGYI 334
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-190 7.09e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 50.85  E-value: 7.09e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  49 HPRAVEAATKYFLTQAAAAAILLFASIYNAWYSGQW-F----IQDMSSPVST------LMTLAIAIKLGIAPMHFWLPEV 117
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtFdiaeLAAAPLPLTAqlllflAFFIAFAVKVPMFPFHTWLPDA 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884 118 MQ----GIS-INTGLILvtwqKLA-------PLALLMQISHNIKPeLLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAH 185
Cdd:COG1008 236 HVeaptAGSvLLAGVLL----KMGgygllrfALPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSH 310


                ....*
gi 38639884 186 LGWII 190
Cdd:COG1008 311 MGFVL 315
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-190 3.22e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.66  E-value: 3.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   50 PRAVEAATKYFLTQAAAAAILLFASIYNAWYS---------GQWFIQDMSSPVSTLMTLAI----AIKLGIAPMHFWLPE 116
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYynatgtfdiADLLNLPLPPGVQYWLFLAFfiafAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  117 VMQ-----GISINTGLILvtwqKLAP-------LALLMQISHNIKPeLLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIA 184
Cdd:PRK05846 237 AHVqaptaGSVLLAGILL----KMGAygllrfsLPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSIS 311


                 ....*.
gi 38639884  185 HLGWII 190
Cdd:PRK05846 312 HMGFVT 317
PRK12650 PRK12650
DUF4040 family protein;
95-190 4.71e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.50  E-value: 4.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   95 TLMTLAIAIKLGIA--------PMHFWLPEVMQGISINTGLILVTWQKLAPLALLMQIS---HNIK--PELLIILGLMST 161
Cdd:PRK12650 204 PGLTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvfHDVAvwNWLLIIVGMITA 283

                         90       100
                 ....*....|....*....|....*....
gi 38639884  162 IIGGWGGLNQTQIRKIMAYSSIAHLGWII 190
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIV 312
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-190 6.13e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.78  E-value: 6.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   33 LEINTLAIIPLMTNKHH-PRAVEAATKYFLTQAAAAAILLFA-----SIYNAWYSGQWFIQDMSSPVST------LMTLA 100
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGiallyGQYGTLNMAYLAVKMSENPTVVakialaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  101 IAIKLGIAPMHFWLPEV--MQGISINTGLILVTWQKLAPLALLM------QISHNIKPELLIILGLMSTIIGGWGGLNQT 172
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAypAAPSSISAMLLVIKQAGLYALARVLfsiygpAINLATVGWVIIILGCLTMFVGVAMAVVQK 309

                        170
                 ....*....|....*...
gi 38639884  173 QIRKIMAYSSIAHLGWII 190
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYML 327
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-189 1.48e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.68  E-value: 1.48e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  48 HHPRAVEAATKYFLTQAAAAAILLFASIYNAWYSGQWFIQDM--------SSPVSTLMTLAIAI----KLGIAPMHFWLP 115
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilSSPLLTLILLLLLLgafgKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884 116 EVMQG---IS--------INTGLILVTwqKLAPLALLMQISHNIkpelLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIA 184
Cdd:COG1009 236 DAMEGptpVSallhaatmVKAGVYLLA--RLSPLFALSPVWLTV----VAIIGAITALFAALIALAQTDIKRVLAYSTVS 309


                ....*
gi 38639884 185 HLGWI 189
Cdd:COG1009 310 QLGYM 314
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-190 1.00e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.87  E-value: 1.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   55 AATKYFLTQAAAAAILLFASIYNAWYSGQwFIQDMS-----SPVSTLMTLAIA-------IKLGIAPMHFWLPEVMQGIS 122
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDT-FTFDLAelgakSYPLALELLLYAgfliafgVKLPIFPLHTWLPDAHGEAS 216

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38639884  123 INTGLILV-TWQKLAPLALL---MQI---SHNIKPELLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWII 190
Cdd:PRK12561 217 APVSMILAgVLLKMGGYALIrfnVQMlpdAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 92-193 2.48e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.99  E-value: 2.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   92 PVSTLMTLAIAI-------KLGIAPMHFWLPEVMQG---IS--------INTGLILVTwqKLAPLAllmqisHNIKP--E 151
Cdd:PRK12644 197 PTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAptpVSaylhaaamVKAGIYLVA--RLAPGF------ADVPVwrP 268

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 38639884  152 LLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWIISIL 193
Cdd:PRK12644 269 TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-269 2.76e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 42.56  E-value: 2.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   96 LMTLAIAIKLGIAPMHFWLPEVMQGIS-INTGLILVTWQKLAPLALLMQISHNIKPE---------LLIILGLMSTIIGG 165
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALIRIYFTVFGGDfrfalglgwLLAVLALLSMLVGS 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  166 WGGLNQTQIRKIMAYSSIAHLGWII---SIL-HFMPALAMVNLFIYLIMTITMFMT----FNLLNSPTINTLAVNWSKSP 237
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILlglALLtPLALAAGLLHLLHHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMP 366

                        170       180       190
                 ....*....|....*....|....*....|..
gi 38639884  238 ILAATSALALLSLGGLPPLSGFMPKWLIIQEL 269
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
95-190 3.67e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.01  E-value: 3.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   95 TLMTLAIAIKLGIAPMHFWLP----EVMQGISINTGLILVtwqKLAP-------LALLMQISHNIKPELLIIlGLMSTII 163
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLA---KLGTygllrfgLQLFPQTWSLVAPGLAII-GTISVIY 284

                         90       100
                 ....*....|....*....|....*..
gi 38639884  164 GGWGGLNQTQIRKIMAYSSIAHLGWII 190
Cdd:PRK07363 285 GALSAIAQKDIKRMVAYSSIGHMGYIL 311
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 99-187 1.38e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   99 LAIAIKLGIAPMHFWLPE-----------VMQGISINTG---LILVTWQKLaPLAllmqiSHNIKPELlIILGLMSTIIG 164
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLGgygLVRLSWPIL-PLG-----AQNLAPAV-IAMGIVGIVYG 310

                         90       100
                 ....*....|....*....|...
gi 38639884  165 GWGGLNQTQIRKIMAYSSIAHLG 187
Cdd:MTH00226 311 SFATCRQIDVKRLVAYSSVAHMG 333
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 7-218 1.50e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 40.37  E-value: 1.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884    7 FVMLTSLGLGTTL-TFTSSHWLLAWMGLEINTLA--IIPLMTNKhhpRAVEAATKYFLTQAAAAAILLFA--SIYNAWYS 81
Cdd:PRK08668 100 FNMFALMSLAGVLgVFLANDLLTLYIFWEIMTFSsfMMVPMGKK---ESRKASLKYFVLSAIGAYAMLYAifLIYAKTGT 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   82 ------GQWFIQDMSSPVSTLMTLAIAI----KLGIAPMHFWLPE-----------VMQGISINTG--LILVTWQKLAPL 138
Cdd:PRK08668 177 fdfadiSQGLINDTSTGFALIVFLFLLAfgvaKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGayGFLLVLYVLPGT 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  139 ALLMQ----ISHNIKPELLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLGWIISILHFMPAL----AMVNLFIYLIM 210
Cdd:PRK08668 257 KLFSEfgtyRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLgfagGLFHVFNHALF 336


                 ....*...
gi 38639884  211 TITMFMTF 218
Cdd:PRK08668 337 KGLFFLIF 344
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-187 1.58e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.07  E-value: 1.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   18 TLTFTSSHWLL---AWM--GLEINTLaiipLMTNKHHPRAVEAATKYFLTQAAAAAILLFASIYNAWYSGQWFIQDMSSP 92
Cdd:PRK08168 114 HLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALWAH 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   93 VST------------LMTLAIAIKLGIAPMHFWLPEVMQ-----------GIsINTGLILvtwqkLAPLALLMQISHNIK 149
Cdd:PRK08168 190 LAAqgaspslqaaalLLVLAVILKTAQLPVHGWLIQVMEaptpvsallhaGV-VNLGGFV-----LIRFAPLLEQAPPAR 263

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 38639884  150 pELLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHLG 187
Cdd:PRK08168 264 -WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMG 300
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 50-216 7.38e-03

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 37.97  E-value: 7.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884   50 PRAVEAATKYFLTQAAAAAILLFASIYNAWYSGQWFIQDM---------SSPVSTLMTLA-IAIKLGIA---PMHFWLPE 116
Cdd:PRK07390 167 PLVVTAARDAFLTKRVGDLLLLMGVVALSPLAGTLNFSDLaawaatanlDPLTATLLGLAlIAGPTGKCaqfPLHLWLDE 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38639884  117 VMQG----------ISINTGLILVTwqKLAPLALLMQISHNikpeLLIILGLMSTIIGGWGGLNQTQIRKIMAYSSIAHL 186
Cdd:PRK07390 247 AMEGpnpasilrnsVVVATGAWVLI--KLQPVLALSPVALT----VLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYL 320

                        170       180       190
                 ....*....|....*....|....*....|.
gi 38639884  187 GWI-ISILHFMPALAMVNLFIYLIMTITMFM 216
Cdd:PRK07390 321 GLVfIAVGLQQPDIALLLLLTHAIAKALLFM 351
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH