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Conserved domains on  [gi|386361876|ref|YP_006273068|]
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movement protein [Wheat dwarf India virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gemini_mov super family cl03325
Geminivirus putative movement protein; This family consists of putative movement proteins from ...
 10-92 1.38e-20

Geminivirus putative movement protein; This family consists of putative movement proteins from Maize streak and wheat dwarf virus.


The actual alignment was detected with superfamily member pfam01708:

Pssm-ID: 366768  Cd Length: 92  Bit Score: 78.64  E-value: 1.38e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386361876   10 SPLAYPGSIAYIPQSPPAvQNEDPWIRLVFVFVAVIAAIGLLYLSYRWFVRDVIILLRAKRQRSTEEIGFGNTPARPDGG 89
Cdd:pfam01708  11 SPQNYLYQTPRVPTAAPS-SSDLPWSRVGEIAIFTLVAVGVLYLLYTWVLKDLILVLKAKRGRSTEELGFGPTPARSSGD 89


                  ...
gi 386361876   90 QPS 92
Cdd:pfam01708  90 PPP 92
 
Name Accession Description Interval E-value
Gemini_mov pfam01708
Geminivirus putative movement protein; This family consists of putative movement proteins from ...
 10-92 1.38e-20

Geminivirus putative movement protein; This family consists of putative movement proteins from Maize streak and wheat dwarf virus.


Pssm-ID: 366768  Cd Length: 92  Bit Score: 78.64  E-value: 1.38e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386361876   10 SPLAYPGSIAYIPQSPPAvQNEDPWIRLVFVFVAVIAAIGLLYLSYRWFVRDVIILLRAKRQRSTEEIGFGNTPARPDGG 89
Cdd:pfam01708  11 SPQNYLYQTPRVPTAAPS-SSDLPWSRVGEIAIFTLVAVGVLYLLYTWVLKDLILVLKAKRGRSTEELGFGPTPARSSGD 89


                  ...
gi 386361876   90 QPS 92
Cdd:pfam01708  90 PPP 92
 
Name Accession Description Interval E-value
Gemini_mov pfam01708
Geminivirus putative movement protein; This family consists of putative movement proteins from ...
 10-92 1.38e-20

Geminivirus putative movement protein; This family consists of putative movement proteins from Maize streak and wheat dwarf virus.


Pssm-ID: 366768  Cd Length: 92  Bit Score: 78.64  E-value: 1.38e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386361876   10 SPLAYPGSIAYIPQSPPAvQNEDPWIRLVFVFVAVIAAIGLLYLSYRWFVRDVIILLRAKRQRSTEEIGFGNTPARPDGG 89
Cdd:pfam01708  11 SPQNYLYQTPRVPTAAPS-SSDLPWSRVGEIAIFTLVAVGVLYLLYTWVLKDLILVLKAKRGRSTEELGFGPTPARSSGD 89


                  ...
gi 386361876   90 QPS 92
Cdd:pfam01708  90 PPP 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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