|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
40-243 |
3.28e-43 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 147.46 E-value: 3.28e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 40 IKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHY 119
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 120 NKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGKH 199
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 38569925 200 ERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELA 243
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALE 204
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
16-243 |
1.01e-37 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 133.21 E-value: 1.01e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 16 LLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELG 95
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 96 NTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENI 175
Cdd:COG0457 91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38569925 176 YRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELA 243
Cdd:COG0457 171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
39-255 |
3.17e-32 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 124.72 E-value: 3.17e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 39 IIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAH 118
Cdd:COG3914 70 AAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 119 YNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGK 198
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 38569925 199 HEraleifdkllrVHEGNVNVIYAMARSNAAISNIdKALYLLELAVKKNRKTIKKWA 255
Cdd:COG3914 230 WE-----------VYDRFEELLAALARGPSELSPF-ALLYLPDDDPAELLALARAWA 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
9-247 |
1.02e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 118.29 E-value: 1.02e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 9 NKEKTEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRG 88
Cdd:COG2956 38 DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 89 IALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEA 168
Cdd:COG2956 118 EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEA 197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 38569925 169 LNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVnVIYAMARSNAAISNIDKALYLLELAVKKN 247
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
17-247 |
2.88e-30 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 114.44 E-value: 2.88e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 17 LYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGN 96
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 97 TDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIY 176
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 38569925 177 RKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKKN 247
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
23-148 |
1.89e-28 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 113.93 E-value: 1.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 23 FMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFE 102
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 38569925 103 YYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGN 148
Cdd:COG3914 168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDN 213
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
28-228 |
7.08e-25 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 103.53 E-value: 7.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 28 QAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKA 107
Cdd:COG3914 25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 108 IKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKHMDAFF 187
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 38569925 188 HKGMELAELGKHERALEIFDKLLRVHEGNV----NVIYAMARSNA 228
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNAdahsNLLFALRQACD 229
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
11-143 |
4.09e-24 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 94.49 E-value: 4.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 11 EKTEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIA 90
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 38569925 91 LAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIK 143
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
42-211 |
1.76e-23 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 94.98 E-value: 1.76e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 42 QEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNK 121
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 122 GVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKmKKHEEALNCFENIYRKHPKHmdaffhkgmelaeLGKHER 201
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERK-LDPEKALALLLEDWATAYLL-------------QGDTEE 213
|
170
....*....|
gi 38569925 202 ALEIFDKLLR 211
Cdd:COG4785 214 ARELFKLALA 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
108-247 |
1.40e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 93.15 E-value: 1.40e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 108 IKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKHMDAFF 187
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 188 HKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKKN 247
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
9-247 |
1.97e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.61 E-value: 1.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 9 NKEKTEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALynqgLALNQLK----KYQDAITCFDKVIKISPEYFAAI 84
Cdd:TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAK----LGLAQLAlaenRFDEARALIDEVLTADPGNVDAL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 85 NNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKK 164
Cdd:TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 165 HEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAV 244
Cdd:TIGR02917 277 YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPAL 356
|
...
gi 38569925 245 KKN 247
Cdd:TIGR02917 357 GLD 359
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
48-182 |
2.87e-21 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 86.78 E-value: 2.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 48 DALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDK 127
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 38569925 128 LLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKH 182
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
16-120 |
2.34e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.44 E-value: 2.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 16 LLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELG 95
Cdd:COG3914 115 LFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG 194
|
90 100
....*....|....*....|....*
gi 38569925 96 NTDGAFEYYNKAIKINPKYAAAHYN 120
Cdd:COG3914 195 RLEEAIAAYRRALELDPDNADAHSN 219
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
32-143 |
4.55e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 83.52 E-value: 4.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 32 AISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKIN 111
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|..
gi 38569925 112 PKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIK 143
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
82-216 |
4.97e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 83.70 E-value: 4.97e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 82 AAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGK 161
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 38569925 162 MKKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGN 216
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
7-142 |
5.33e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 83.04 E-value: 5.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 7 FTNKEKTEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINN 86
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 38569925 87 RGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGvLYDKLLQHEEAIQSLDEAI 142
Cdd:COG4785 147 RGIALYYLGRYELAIADLEKALELDPNDPERALWLY-LAERKLDPEKALALLLEDW 201
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
87-249 |
3.19e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.39 E-value: 3.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 87 RGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHE 166
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 167 EALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKK 246
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
...
gi 38569925 247 NRK 249
Cdd:COG2956 174 DPD 176
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
53-145 |
1.71e-16 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 74.61 E-value: 1.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 53 QGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHE 132
Cdd:COG5010 60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|...
gi 38569925 133 EAIQSLDEAIKCD 145
Cdd:COG5010 140 EAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
14-117 |
8.79e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.96 E-value: 8.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 14 EDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAE 93
Cdd:COG4235 18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97
|
90 100
....*....|....*....|....
gi 38569925 94 LGNTDGAFEYYNKAIKINPKYAAA 117
Cdd:COG4235 98 QGDYAEAIAAWQKLLALLPADAPA 121
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
65-185 |
9.07e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.96 E-value: 9.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 65 DAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKC 144
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 38569925 145 DSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKHMDA 185
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
16-114 |
9.18e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.15 E-value: 9.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 16 LLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELG 95
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
90
....*....|....*....
gi 38569925 96 NTDGAFEYYNKAIKINPKY 114
Cdd:COG4783 121 RPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
115-247 |
1.70e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.38 E-value: 1.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 115 AAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKHMDAFFHKGMELA 194
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 38569925 195 ELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKKN 247
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
100-216 |
6.75e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.65 E-value: 6.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 100 AFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKH 179
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 38569925 180 PKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGN 216
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
56-143 |
9.35e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 68.27 E-value: 9.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 56 ALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEyYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAI 135
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*...
gi 38569925 136 QSLDEAIK 143
Cdd:COG3063 80 AYLERALE 87
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
23-113 |
1.20e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 67.89 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 23 FMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITcFDKVIKISPEYFAAINNRGIALAELGNTDGAFE 102
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 38569925 103 YYNKAIKINPK 113
Cdd:COG3063 81 YLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
9-252 |
3.99e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.04 E-value: 3.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 9 NKEKTEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRG 88
Cdd:TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 89 IALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYrgVVLGKMKKHEE- 167
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL--LILSYLRSGQFd 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 168 -ALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKK 246
Cdd:TIGR02917 449 kALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528
|
....*.
gi 38569925 247 NRKTIK 252
Cdd:TIGR02917 529 DPKNLR 534
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
82-180 |
1.40e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.91 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 82 AAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGK 161
Cdd:COG5010 55 AIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
90
....*....|....*....
gi 38569925 162 MKKHEEALNCFENIYRKHP 180
Cdd:COG5010 135 LGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
90-181 |
2.23e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 64.42 E-value: 2.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 90 ALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQsLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEAL 169
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 38569925 170 NCFENIYRKHPK 181
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
14-112 |
2.52e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.14 E-value: 2.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 14 EDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAE 93
Cdd:COG5010 55 AIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
90
....*....|....*....
gi 38569925 94 LGNTDGAFEYYNKAIKINP 112
Cdd:COG5010 135 LGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
20-247 |
5.16e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.96 E-value: 5.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 20 AMSFMEKGQAKNAISFFKKIIKQEPKNiDALYN-QGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRG-IALAElGNT 97
Cdd:TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDN-ASLHNlLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLArIDIQE-GNP 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 98 DGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTA-----FYRGVvlGKMKKHEEALNCF 172
Cdd:TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAlalaqYYLGK--GQLKKALAILNEA 593
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38569925 173 ENIYRKHPKhmdAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKKN 247
Cdd:TIGR02917 594 ADAAPDSPE---AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
8-251 |
2.00e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 63.95 E-value: 2.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 8 TNKEKTEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNR 87
Cdd:TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 88 GIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEE 167
Cdd:TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 168 ALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKKN 247
Cdd:TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427
|
....
gi 38569925 248 RKTI 251
Cdd:TIGR02917 428 PELG 431
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
133-247 |
2.21e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 2.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 133 EAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRV 212
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 38569925 213 HEGNVNVIYAMARSNAAISNIDKALYLLELAVKKN 247
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
14-259 |
4.16e-11 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 62.26 E-value: 4.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 14 EDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPE-----YF------- 81
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekYLylgqlsg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 82 --AAIN--NRGIAL--AELGNTDGAFEYYNKAIK-INPKYAAAHYNKGVLY--DkLLQHEEA----IQSLDEAIKCDSGN 148
Cdd:cd24142 81 geEALQyyEKGIEIleEELQALQAASAEAEEEAEeLKRKLSSALCALAEIYmtD-LCDEPDAeqrcEELITKALELDPTN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 149 VNT----AFYRGVvlgkMKKHEEALNCFENIY----RKHPKHMDAFFHKGME----------------LAELGKHERALE 204
Cdd:cd24142 160 PEAlqtlASLRIS----QQRPDEAKEALRRSLelwkDLKEEDEEEAEEDEAEeedvpsyefrislaklLIELEMYEEALE 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 38569925 205 IFDKLLRVHEGNVNVIYAMA---------RSNAAISNIDKALYLLELAVKKnrktIKKWAIEDE 259
Cdd:cd24142 236 VLEQLLDEDDEDVEVWYLLGwayyllgekEQEEAAELLRDARELLEKALKL----YEKLEYEDE 295
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
73-213 |
1.51e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 73 VIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTA 152
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 38569925 153 FYRGVVLGKMKKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVH 213
Cdd:COG5010 92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
21-117 |
2.28e-10 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 56.54 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 21 MSFMEKGQAKNAISFFKKIIKQEPKNI---DALYNQGLALNQLKKYQDAITCFDKVIKISPEYF---AAINNRGIALAEL 94
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90 100
....*....|....*....|...
gi 38569925 95 GNTDGAFEYYNKAIKINPKYAAA 117
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAA 103
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
20-219 |
2.75e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.48 E-value: 2.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 20 AMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDG 99
Cdd:TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 100 AFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCdSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKH 179
Cdd:TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 38569925 180 PKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNV 219
Cdd:TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
16-136 |
3.27e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 3.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 16 LLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELG 95
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 38569925 96 NTDGaFEYYNKAIKINPKYAAAHYNKGVLY----DKLLQHEEAIQ 136
Cdd:COG3914 229 DWEV-YDRFEELLAALARGPSELSPFALLYlpddDPAELLALARA 272
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
62-207 |
4.54e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 59.61 E-value: 4.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 62 KYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEA 141
Cdd:TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38569925 142 IKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFD 207
Cdd:TIGR00990 426 IDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
9-79 |
1.96e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 1.96e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 38569925 9 NKEKTEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPE 79
Cdd:COG4235 47 DPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
82-247 |
5.05e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.54 E-value: 5.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 82 AAINNRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGK 161
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 162 MKKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLE 241
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170
|
....*.
gi 38569925 242 LAVKKN 247
Cdd:COG3914 171 RALELD 176
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
16-143 |
1.13e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.86 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 16 LLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQdAITCFDKVIKISPEYFAAINNRGIALAELG 95
Cdd:TIGR02917 773 RTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKG 851
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 38569925 96 NTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIK 143
Cdd:TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
26-252 |
3.22e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.32 E-value: 3.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 26 KGQAKNAISFFKKIIKQEPKNID---ALYNQGLALNQLKKyqdAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAFE 102
Cdd:TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEpalALAQYYLGKGQLKK---ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 103 YYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKH 182
Cdd:TIGR02917 623 SFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA 702
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 183 MDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYaMARSNAAISNIDKALYLLELAVKKNRKTIK 252
Cdd:TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAV 771
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
103-247 |
7.33e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.73 E-value: 7.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 103 YYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPKH 182
Cdd:COG5010 8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38569925 183 MDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKKN 247
Cdd:COG5010 88 PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
9-241 |
1.97e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 1.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 9 NKEKTEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKniDALYNQGLALNQL--KKYQDAITCFDKVIKISPEYFAAINn 86
Cdd:TIGR02917 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK--AALGFELEGDLYLrqKDYPAAIQAYRKALKRAPSSQNAIK- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 87 RGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNV----NTAFyrgvVLGKm 162
Cdd:TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAvvlnNLAW----LYLE- 816
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 38569925 163 KKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLE 241
Cdd:TIGR02917 817 LKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
158-252 |
3.02e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 3.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 158 VLGKMKKHEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEiFDKLLRVHEGNVNVIYAMARSNAAISNIDKAL 237
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 38569925 238 YLLELAVKKNRKTIK 252
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
14-117 |
5.09e-07 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 47.28 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 14 EDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNI---DALYNQGLALNQLKKYQDAITCFDKVIKISPEY-FAAIN--NR 87
Cdd:TIGR02795 1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTyapNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSpKAPDAllKL 80
|
90 100 110
....*....|....*....|....*....|
gi 38569925 88 GIALAELGNTDGAFEYYNKAIKINPKYAAA 117
Cdd:TIGR02795 81 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
16-83 |
1.08e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 1.08e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 38569925 16 LLYQAMSFMEKGQAKNAISFFKKIIKQEPKNI---DALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAA 83
Cdd:COG1729 33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
17-113 |
1.08e-06 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 48.31 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 17 LYQAMSFMEKGQAKNAISFFKKIIKQEP-KNIDALYNQGLA--LNQLKKYQDAITCFDKVIkisPEYFAAI--NNRGIAL 91
Cdd:COG2976 94 LLLAKAAVDAGDLDKAAAQLQWVLDNAKdPALKALARLRLArvLLAQKKYDEALATLDAVK---PEAFAALyaELRGDIL 170
|
90 100
....*....|....*....|..
gi 38569925 92 AELGNTDGAFEYYNKAIKINPK 113
Cdd:COG2976 171 LAQGDKAEARAAYQKALAALPE 192
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
51-115 |
2.67e-06 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 44.25 E-value: 2.67e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 38569925 51 YNQGLALNQLKKYQDAITCFDKVIK---ISPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPKYA 115
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
49-113 |
2.69e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.30 E-value: 2.69e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 38569925 49 ALYNQGLALNQLKKYQDAITCFDKVIKI--------SPEYFAAINNRGIALAELGNTDGAFEYYNKAIKINPK 113
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
130-225 |
3.19e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.98 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 130 QHEEAIQSLDEAIKCDSGNVNTA---FYRGVVLGKMKKHEEALNCFENIYRKHPKH---MDAFFHKGMELAELGKHERAL 203
Cdd:COG1729 8 DYDEAIAAFKAFLKRYPNSPLAPdalYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDKAR 87
|
90 100
....*....|....*....|..
gi 38569925 204 EIFDKLLRVHEGNVNVIYAMAR 225
Cdd:COG1729 88 ATLEELIKKYPDSEAAKEARAR 109
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
88-128 |
5.40e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.46 E-value: 5.40e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 38569925 88 GIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKL 128
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
15-226 |
8.63e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 47.00 E-value: 8.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 15 DLLYQA----MSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPE----------- 79
Cdd:PRK11447 267 DPAFRAraqgLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHssnrdkwesll 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 80 ----YFAAINNRGIALAElGNTDGAFEYYNKAIKINPK--YAAAHYNKGVLYDKllQHEEAIQSLDEAIKCDSGNVNTAf 153
Cdd:PRK11447 347 kvnrYWLLIQQGDAALKA-NNLAQAERLYQQARQVDNTdsYAVLGLGDVAMARK--DYAAAERYYQQALRMDPGNTNAV- 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 154 yRGVV-LGKMKKHEEALNCFENIYRKHPKHM---------DAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAM 223
Cdd:PRK11447 423 -RGLAnLYRQQSPEKALAFIASLSASQRRSIddierslqnDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL 501
|
...
gi 38569925 224 ARS 226
Cdd:PRK11447 502 AQD 504
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
47-80 |
2.32e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.48 E-value: 2.32e-05
10 20 30
....*....|....*....|....*....|....
gi 38569925 47 IDALYNQGLALNQLKKYQDAITCFDKVIKISPEY 80
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
161-246 |
3.04e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 161 KMKKHEEALNCFENIYRKHPKHM---DAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNV---IYAMARSNAAISNID 234
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYD 84
|
90
....*....|..
gi 38569925 235 KALYLLELAVKK 246
Cdd:COG1729 85 KARATLEELIKK 96
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
79-143 |
4.20e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.83 E-value: 4.20e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 38569925 79 EYFAAINNRGIALAELGNTDGAFEYYNKAIKI--------NPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIK 143
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
47-80 |
5.58e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 5.58e-05
10 20 30
....*....|....*....|....*....|....
gi 38569925 47 IDALYNQGLALNQLKKYQDAITCFDKVIKISPEY 80
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
19-275 |
7.21e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.82 E-value: 7.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 19 QAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALnQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAElGNTD 98
Cdd:TIGR00990 230 QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPE-SKAD 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 99 GAFE----YYNKAI---KINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNC 171
Cdd:TIGR00990 308 ESYEeaarAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 172 FENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDKLLRVHEGNVNVIYAMARSNAAISNIDKALYLLELAVKKNRKTI 251
Cdd:TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP 467
|
250 260
....*....|....*....|....
gi 38569925 252 KkwaIEDEFFDSLQDEPKFNKLIK 275
Cdd:TIGR00990 468 D---VYNYYGELLLDQNKFDEAIE 488
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
103-136 |
1.12e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 38.68 E-value: 1.12e-04
10 20 30
....*....|....*....|....*....|....
gi 38569925 103 YYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQ 136
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
22-210 |
1.33e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 22 SFMEKGQAKNAISFFKKIIKQEPKNiDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELGNTDGAF 101
Cdd:TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 102 EYYNKAIKINPKYAAAHYNKGVLYDKLlQHEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKHEEALNCFENIYRKHPK 181
Cdd:TIGR02917 791 KHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869
|
170 180
....*....|....*....|....*....
gi 38569925 182 HMDAFFHKGMELAELGKHERALEIFDKLL 210
Cdd:TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
54-95 |
1.54e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.22 E-value: 1.54e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 38569925 54 GLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALAELG 95
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
83-114 |
1.58e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 1.58e-04
10 20 30
....*....|....*....|....*....|..
gi 38569925 83 AINNRGIALAELGNTDGAFEYYNKAIKINPKY 114
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
86-141 |
1.84e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.20 E-value: 1.84e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 38569925 86 NRGIALAELGNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEA 141
Cdd:PRK02603 77 NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEA 132
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
13-224 |
2.49e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 42.28 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 13 TEDLLYQAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRGIALA 92
Cdd:TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 93 ELGNTDGAFEYYNKAIKINPKYAAAH-YNKGVLYDKlLQHEEAIQSLDEAIKCD------SGNVNTAFYRGVVLGKMKK- 164
Cdd:TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYnYYGELLLDQ-NKFDEAIEKFDTAIELEketkpmYMNVLPLINKALALFQWKQd 523
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 38569925 165 HEEALNCFENIYRKHPKHMDAFFHKGMELAELGKHERALEIFDK---LLRVHEGNVNVI-YAMA 224
Cdd:TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERaaeLARTEGELVQAIsYAEA 587
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
20-143 |
3.06e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.41 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 20 AMSFMEKGQAKNAISFFKKIIKQE-PKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEY------FAainnRGIALA 92
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFkssdahLL----YARALE 171
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 38569925 93 ELGNTDGAFEYYNKAIKINPKYAAAhynkgVLYDKLLQ----HEEAIQSLDEAIK 143
Cdd:COG4700 172 ALGDLEAAEAELEALARRYSGPEAR-----YRYAKFLArqgrTAEAKELLEEILD 221
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
86-148 |
3.54e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 3.54e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 38569925 86 NRGIALAELGNTDGAFEYYNKAIKIN---PKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGN 148
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
90-211 |
5.11e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 40.64 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 90 ALAELGNTDGAFEYYNKAIK-INPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSG--NVNTAFYRGVVLGKMKKHE 166
Cdd:COG4700 98 ALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALEALGDLE 177
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 38569925 167 EALNCFENIYRKHPkHMDAFFHKGMELAELGKHERALEIFDKLLR 211
Cdd:COG4700 178 AAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILD 221
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
11-135 |
8.74e-04 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 39.84 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 11 EKTEDLLY-QAMSFMEKGQAKNAISFFKKIIKQEP----------KNIDALYNQGlalnqlkKYQDAITCFDKVIKISPE 79
Cdd:TIGR03302 30 EWPAEELYeEAKEALDSGDYTEAIKYFEALESRYPfspyaeqaqlDLAYAYYKSG-------DYAEAIAAADRFIRLHPN 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38569925 80 --------------YFAAIN--NRGIALAELgntdgAFEYYNKAIKINP--KYAA-AHYNKGVLYDKLLQHEEAI 135
Cdd:TIGR03302 103 hpdadyayylrglsNYNQIDrvDRDQTAARE-----AFEAFQELIRRYPnsEYAPdAKKRMDYLRNRLAGKELYV 172
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
83-114 |
8.78e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 8.78e-04
10 20 30
....*....|....*....|....*....|..
gi 38569925 83 AINNRGIALAELGNTDGAFEYYNKAIKINPKY 114
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
10-135 |
1.40e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 39.09 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 10 KEKTEDLLYQ-AMSFMEKGQAKNAISFFKKIIKQEP---KNIDALYNQGLALNQLKKYQDAITCFDKVIKISPE------ 79
Cdd:COG4105 28 KSWDAEELYEeAKEALEKGDYEKAIKLFEELEPRYPgspYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNspnady 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 38569925 80 -YF--AAINNRGIALAEL--GNTDGAFEYYNKAIKINP--KYAA-AHYNKGVLYDKLLQHEEAI 135
Cdd:COG4105 108 aYYlrGLSYYEQSPDSDRdqTSTRKAIEAFQELINRYPdsEYAEdAKKRIDELRDKLARKELEV 171
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
115-148 |
2.51e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 2.51e-03
10 20 30
....*....|....*....|....*....|....
gi 38569925 115 AAAHYNKGVLYDKLLQHEEAIQSLDEAIKCDSGN 148
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
81-113 |
3.38e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.42 E-value: 3.38e-03
10 20 30
....*....|....*....|....*....|...
gi 38569925 81 FAAINNRGIALAELGNTDGAFEYYNKAIKINPK 113
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
35-67 |
3.45e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 34.44 E-value: 3.45e-03
10 20 30
....*....|....*....|....*....|...
gi 38569925 35 FFKKIIKQEPKNIDALYNQGLALNQLKKYQDAI 67
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
19-143 |
6.44e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 37.48 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 19 QAMSFMEKGQAKNAISFFKKIIKQEPKNIDALYNQGLALNQLKKYQDAITCFDKVIKISPEYFAAINNRgiaLAE----L 94
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK---LMEcyqaL 262
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 38569925 95 GNTDGAFEYYNKAIkinpkyaaAHYNKGVLYDKLLQHEEAIQSLDEAIK 143
Cdd:PRK11788 263 GDEAEGLEFLRRAL--------EEYPGADLLLALAQLLEEQEGPEAAQA 303
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
31-275 |
7.50e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 37.66 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 31 NAISFFKKII--KQEP---KNIDALYNqglALNQLKKYQDAITcfdKVIKISPEYFAAINNRGIALAELGN-TDGAFEYy 104
Cdd:TIGR00990 145 KAIKLYSKAIecKPDPvyySNRAACHN---ALGDWEKVVEDTT---AALELDPDYSKALNRRANAYDGLGKyADALLDL- 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 105 nKAIKINPKYAAAHYNKGVlyDKLLQhEEAIQSLDEAIKCDSGNVNTAFYRGVVLGKMKKH-------------EEALNC 171
Cdd:TIGR00990 218 -TASCIIDGFRNEQSAQAV--ERLLK-KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKprpagledsneldEETGNG 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38569925 172 FENIYRKHPK--------HMDAFFHKGMELAELGKHER-ALE---IFDKLLRVHEGnvnviyamarsnaAISNIDKAlyl 239
Cdd:TIGR00990 294 QLQLGLKSPEskadesyeEAARAFEKALDLGKLGEKEAiALNlrgTFKCLKGKHLE-------------ALADLSKS--- 357
|
250 260 270
....*....|....*....|....*....|....*.
gi 38569925 240 LELAVKKNRKTIKKWAIEDEFFDSLQDEPKFNKLIK 275
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
95-145 |
7.54e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 34.10 E-value: 7.54e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 38569925 95 GNTDGAFEYYNKAIKINPKYAAAHYNKGVLYDKLLQHEEAIQSLDEAIKCD 145
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAD 52
|
|
| TPR_6 |
pfam13174 |
Tetratricopeptide repeat; |
48-79 |
8.76e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463800 [Multi-domain] Cd Length: 33 Bit Score: 33.21 E-value: 8.76e-03
10 20 30
....*....|....*....|....*....|..
gi 38569925 48 DALYNQGLALNQLKKYQDAITCFDKVIKISPE 79
Cdd:pfam13174 1 DALLKLALAYLELGDTDEAKEALERLIKKYPD 32
|
|
| |
