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Conserved domains on  [gi|385663922|gb|AFI70975|]
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UL1 [Suid alphaherpesvirus 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03298 super family cl14538
envelope glycoprotein L; Provisional
 86-140 1.01e-04

envelope glycoprotein L; Provisional


The actual alignment was detected with superfamily member PHA03298:

Pssm-ID: 165555  Cd Length: 167  Bit Score: 40.51  E-value: 1.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 385663922  86 VTSVVVKPYCSPPEVILW-ASGTAYLVNPFVAIQALAI---GEPLNEAALKELGEVAVH 140
Cdd:PHA03298  83 LLTIIFKPLCSNPEAIFWyKNGTAAKVNPYLGCRILQDaleANGLAAAKFLARGLIAEH 141
 
Name Accession Description Interval E-value
PHA03298 PHA03298
envelope glycoprotein L; Provisional
 86-140 1.01e-04

envelope glycoprotein L; Provisional


Pssm-ID: 165555  Cd Length: 167  Bit Score: 40.51  E-value: 1.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 385663922  86 VTSVVVKPYCSPPEVILW-ASGTAYLVNPFVAIQALAI---GEPLNEAALKELGEVAVH 140
Cdd:PHA03298  83 LLTIIFKPLCSNPEAIFWyKNGTAAKVNPYLGCRILQDaleANGLAAAKFLARGLIAEH 141
Herpes_UL1 pfam05259
Herpesvirus glycoprotein L; This family consists of several herpesvirus glycoprotein L or UL1 ...
 77-121 1.95e-03

Herpesvirus glycoprotein L; This family consists of several herpesvirus glycoprotein L or UL1 proteins. Glycoprotein L is known to form a complex with glycoprotein H but the function of this complex is poorly understood.


Pssm-ID: 283034  Cd Length: 103  Bit Score: 36.04  E-value: 1.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 385663922   77 YSLPP--DMTAVTSVVVKPYCSPPEVILW--ASGTAYLVNPFVAIQALA 121
Cdd:pfam05259  32 YEAPSviNYAAIDGIFLKYHCPGPETILWdrHKQMAYWVNPFLFTAGFL 80
 
Name Accession Description Interval E-value
PHA03298 PHA03298
envelope glycoprotein L; Provisional
 86-140 1.01e-04

envelope glycoprotein L; Provisional


Pssm-ID: 165555  Cd Length: 167  Bit Score: 40.51  E-value: 1.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 385663922  86 VTSVVVKPYCSPPEVILW-ASGTAYLVNPFVAIQALAI---GEPLNEAALKELGEVAVH 140
Cdd:PHA03298  83 LLTIIFKPLCSNPEAIFWyKNGTAAKVNPYLGCRILQDaleANGLAAAKFLARGLIAEH 141
PHA03303 PHA03303
envelope glycoprotein L; Provisional
 74-121 2.72e-04

envelope glycoprotein L; Provisional


Pssm-ID: 165560  Cd Length: 159  Bit Score: 39.18  E-value: 2.72e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 385663922  74 YIAYSLPPDMTAVTSVVVKPYCSPPEVILWASG--TAYLVNPFVAIQALA 121
Cdd:PHA03303  58 YAAPPVPNLKEAISGFVLKSKCPIPELIIWFKDkhMAYWTNPYVMLHGLA 107
PHA03297 PHA03297
envelope glycoprotein L; Provisional
 83-121 1.38e-03

envelope glycoprotein L; Provisional


Pssm-ID: 165554  Cd Length: 185  Bit Score: 37.32  E-value: 1.38e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 385663922  83 MTAVTSVVVKPYCSPPEVILWAS--GTAYLVNPFVAIQALA 121
Cdd:PHA03297  68 LNRTTGIMVKAHCNPPEAILWVDtpPKPVWVNPFAVIQGLA 108
Herpes_UL1 pfam05259
Herpesvirus glycoprotein L; This family consists of several herpesvirus glycoprotein L or UL1 ...
 77-121 1.95e-03

Herpesvirus glycoprotein L; This family consists of several herpesvirus glycoprotein L or UL1 proteins. Glycoprotein L is known to form a complex with glycoprotein H but the function of this complex is poorly understood.


Pssm-ID: 283034  Cd Length: 103  Bit Score: 36.04  E-value: 1.95e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 385663922   77 YSLPP--DMTAVTSVVVKPYCSPPEVILW--ASGTAYLVNPFVAIQALA 121
Cdd:pfam05259  32 YEAPSviNYAAIDGIFLKYHCPGPETILWdrHKQMAYWVNPFLFTAGFL 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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