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Conserved domains on  [gi|384933818|gb|AFI30496|]
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D-alanine--poly(phosphoribitol) ligase subunit 2 [Bacillus sp. JS]

Protein Classification

D-alanine--poly(phosphoribitol) ligase subunit DltC( domain architecture ID 10012246)

D-alanine--poly(phosphoribitol) ligase subunit DltC is a carrier protein involved in the D-alanylation of lipoteichoic acid (LTA)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05087 PRK05087
D-alanine--poly(phosphoribitol) ligase subunit DltC;
1-78 7.52e-37

D-alanine--poly(phosphoribitol) ligase subunit DltC;


:

Pssm-ID: 179929  Cd Length: 78  Bit Score: 118.14  E-value: 7.52e-37
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 384933818  1 MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSELK 78
Cdd:PRK05087  1 MDFKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEELQ 78
 
Name Accession Description Interval E-value
PRK05087 PRK05087
D-alanine--poly(phosphoribitol) ligase subunit DltC;
1-78 7.52e-37

D-alanine--poly(phosphoribitol) ligase subunit DltC;


Pssm-ID: 179929  Cd Length: 78  Bit Score: 118.14  E-value: 7.52e-37
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 384933818  1 MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSELK 78
Cdd:PRK05087  1 MDFKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEELQ 78
dltC TIGR01688
D-alanine--poly(phosphoribitol) ligase, subunit 2; This protein is part of the teichoic acid ...
 4-76 8.04e-34

D-alanine--poly(phosphoribitol) ligase, subunit 2; This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 130749  Cd Length: 73  Bit Score: 110.32  E-value: 8.04e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 384933818   4 KQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSE 76
Cdd:TIGR01688  1 KNGVLDILAEVTGSDDVKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLEE 73
AcpP COG0236
Acyl carrier protein [Lipid transport and metabolism]; Acyl carrier protein is part of the ...
 1-78 8.86e-05

Acyl carrier protein [Lipid transport and metabolism]; Acyl carrier protein is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440006 [Multi-domain]  Cd Length: 80  Bit Score: 36.76  E-value: 8.86e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 384933818  1 MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRdvWNTPNNIVNQLSELK 78
Cdd:COG0236   4 EELEERLAEIIAEVLGVDPEEITPDDSFFEDLGLDSLDAVELIAALEEEFGIELPDTELFE--YPTVADLADYLEEKL 79
PP-binding pfam00550
Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached ...
 5-59 1.58e-04

Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.


Pssm-ID: 425746 [Multi-domain]  Cd Length: 62  Bit Score: 36.00  E-value: 1.58e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 384933818   5 QEVLDVLAEVCQDDIVKENPDIEIFEEGLlDSFGTVELLLAIENRFDILVPITEF 59
Cdd:pfam00550  1 ERLRELLAEVLGVPAEEIDPDTDLFDLGL-DSLLAVELIARLEEEFGVEIPPSDL 54
 
Name Accession Description Interval E-value
PRK05087 PRK05087
D-alanine--poly(phosphoribitol) ligase subunit DltC;
1-78 7.52e-37

D-alanine--poly(phosphoribitol) ligase subunit DltC;


Pssm-ID: 179929  Cd Length: 78  Bit Score: 118.14  E-value: 7.52e-37
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 384933818  1 MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSELK 78
Cdd:PRK05087  1 MDFKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEELQ 78
dltC TIGR01688
D-alanine--poly(phosphoribitol) ligase, subunit 2; This protein is part of the teichoic acid ...
 4-76 8.04e-34

D-alanine--poly(phosphoribitol) ligase, subunit 2; This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 130749  Cd Length: 73  Bit Score: 110.32  E-value: 8.04e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 384933818   4 KQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSE 76
Cdd:TIGR01688  1 KNGVLDILAEVTGSDDVKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLEE 73
AcpP COG0236
Acyl carrier protein [Lipid transport and metabolism]; Acyl carrier protein is part of the ...
 1-78 8.86e-05

Acyl carrier protein [Lipid transport and metabolism]; Acyl carrier protein is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440006 [Multi-domain]  Cd Length: 80  Bit Score: 36.76  E-value: 8.86e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 384933818  1 MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDSFGTVELLLAIENRFDILVPITEFDRdvWNTPNNIVNQLSELK 78
Cdd:COG0236   4 EELEERLAEIIAEVLGVDPEEITPDDSFFEDLGLDSLDAVELIAALEEEFGIELPDTELFE--YPTVADLADYLEEKL 79
PP-binding pfam00550
Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached ...
 5-59 1.58e-04

Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.


Pssm-ID: 425746 [Multi-domain]  Cd Length: 62  Bit Score: 36.00  E-value: 1.58e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 384933818   5 QEVLDVLAEVCQDDIVKENPDIEIFEEGLlDSFGTVELLLAIENRFDILVPITEF 59
Cdd:pfam00550  1 ERLRELLAEVLGVPAEEIDPDTDLFDLGL-DSLLAVELIARLEEEFGVEIPPSDL 54
PRK07081 PRK07081
acyl carrier protein; Provisional
 4-55 6.03e-04

acyl carrier protein; Provisional


Pssm-ID: 180828  Cd Length: 83  Bit Score: 34.93  E-value: 6.03e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 384933818  4 KQEVLDVLAEVCQDDIVKEN--PDIEIFEEGLlDSFGTVELLLAIENRFDILVP 55
Cdd:PRK07081  2 KNTIRTILKKVAKLEVPIDSiaDDADLYEAGL-SSLATVQLMLAIEDAFDIEIP 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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