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Conserved domains on  [gi|38348382|ref|NP_940948|]
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spermatogenesis-associated protein 21 isoform 1 [Homo sapiens]

Protein Classification

EF-hand domain-containing protein( domain architecture ID 10040236)

EF-hand (EFh) domain-containing protein may be involved in binding intracellular calcium and in calcium signal transduction

CATH:  1.10.238.10
Gene Ontology:  GO:0005509
PubMed:  2479149|10191494
SCOP:  3001983

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EFh cd00051
EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal ...
 226-285 2.89e-10

EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.


:

Pssm-ID: 238008 [Multi-domain]  Cd Length: 63  Bit Score: 56.02  E-value: 2.89e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38348382 226 FRSYFEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:cd00051   2 LREAFRLFdkDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 94-200 2.39e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382    94 KMEASHRRASKARSQTAQKSPRTLTPVPTSAPSlpQTPASVPASGPSWARLPAPGPEPAPMGAPVPTSMPCPVllGPALD 173
Cdd:PHA03247  385 RRSARHAATPFARGPGGDDQTRPAAPVPASVPT--PAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPP--APATE 460

                          90       100
                  ....*....|....*....|....*..
gi 38348382   174 LGWRRMEllhQSSERTLSYAKARQEPE 200
Cdd:PHA03247  461 PAPDDPD---DATRKALDALRERRPPE 484
 
Name Accession Description Interval E-value
EFh cd00051
EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal ...
 226-285 2.89e-10

EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.


Pssm-ID: 238008 [Multi-domain]  Cd Length: 63  Bit Score: 56.02  E-value: 2.89e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38348382 226 FRSYFEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:cd00051   2 LREAFRLFdkDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
PTZ00184 PTZ00184
calmodulin; Provisional
 223-285 2.81e-08

calmodulin; Provisional


Pssm-ID: 185504 [Multi-domain]  Cd Length: 149  Bit Score: 52.84  E-value: 2.81e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38348382  223 EEAFRSYFEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:PTZ00184  83 EEEIKEAFKVFdrDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147
Dockerin_1 pfam00404
Dockerin type I domain; The dockerin repeat is the binding partner of the cohesin domain ...
 234-284 3.18e-05

Dockerin type I domain; The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium. This family contains two copies of the repeat.


Pssm-ID: 459805 [Multi-domain]  Cd Length: 56  Bit Score: 41.40  E-value: 3.18e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 38348382   234 NGPGEV---DAQSLKNILLLMGFSVTlaqveDALMSADVNGDGRVDFKDFLAVM 284
Cdd:pfam00404   4 NGDGKVnalDALLLKNYLLGSGTGSS-----INKKAADVNGDGKVNALDALLLK 52
FRQ1 COG5126
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];
222-286 4.62e-05

Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];


Pssm-ID: 444056 [Multi-domain]  Cd Length: 137  Bit Score: 43.24  E-value: 4.62e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38348382 222 QEEAFRSYFEIF--NGPGEVDAQSLKniLLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMTD 286
Cdd:COG5126  67 VEPFARAAFDLLdtDGDGKISADEFR--RLLTALGVSEEEADELFARLDTDGDGKISFEEFVAAVRD 131
PHA03247 PHA03247
large tegument protein UL36; Provisional
 94-200 2.39e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382    94 KMEASHRRASKARSQTAQKSPRTLTPVPTSAPSlpQTPASVPASGPSWARLPAPGPEPAPMGAPVPTSMPCPVllGPALD 173
Cdd:PHA03247  385 RRSARHAATPFARGPGGDDQTRPAAPVPASVPT--PAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPP--APATE 460

                          90       100
                  ....*....|....*....|....*..
gi 38348382   174 LGWRRMEllhQSSERTLSYAKARQEPE 200
Cdd:PHA03247  461 PAPDDPD---DATRKALDALRERRPPE 484
EFh smart00054
EF-hand, calcium binding motif; EF-hands are calcium-binding motifs that occur at least in ...
 259-285 1.74e-03

EF-hand, calcium binding motif; EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.


Pssm-ID: 197492 [Multi-domain]  Cd Length: 29  Bit Score: 35.82  E-value: 1.74e-03
                           10        20
                   ....*....|....*....|....*..
gi 38348382    259 QVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:smart00054   1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27
 
Name Accession Description Interval E-value
EFh cd00051
EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal ...
 226-285 2.89e-10

EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.


Pssm-ID: 238008 [Multi-domain]  Cd Length: 63  Bit Score: 56.02  E-value: 2.89e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 38348382 226 FRSYFEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:cd00051   2 LREAFRLFdkDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
PTZ00184 PTZ00184
calmodulin; Provisional
 223-285 2.81e-08

calmodulin; Provisional


Pssm-ID: 185504 [Multi-domain]  Cd Length: 149  Bit Score: 52.84  E-value: 2.81e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 38348382  223 EEAFRSYFEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:PTZ00184  83 EEEIKEAFKVFdrDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147
PTZ00183 PTZ00183
centrin; Provisional
 208-285 4.49e-07

centrin; Provisional


Pssm-ID: 185503 [Multi-domain]  Cd Length: 158  Bit Score: 49.30  E-value: 4.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382  208 YQNREKSEEQLTLKQEEAFRSYFEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:PTZ00183   1 MRKRRSERPGLTEDQKKEIREAFDLFdtDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80
PTZ00184 PTZ00184
calmodulin; Provisional
 216-284 2.93e-06

calmodulin; Provisional


Pssm-ID: 185504 [Multi-domain]  Cd Length: 149  Bit Score: 47.06  E-value: 2.93e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 38348382  216 EQLTLKQEEAFRSYFEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVM 284
Cdd:PTZ00184   3 DQLTEEQIAEFKEAFSLFdkDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLM 73
Dockerin_1 pfam00404
Dockerin type I domain; The dockerin repeat is the binding partner of the cohesin domain ...
 234-284 3.18e-05

Dockerin type I domain; The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium. This family contains two copies of the repeat.


Pssm-ID: 459805 [Multi-domain]  Cd Length: 56  Bit Score: 41.40  E-value: 3.18e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 38348382   234 NGPGEV---DAQSLKNILLLMGFSVTlaqveDALMSADVNGDGRVDFKDFLAVM 284
Cdd:pfam00404   4 NGDGKVnalDALLLKNYLLGSGTGSS-----INKKAADVNGDGKVNALDALLLK 52
FRQ1 COG5126
Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];
222-286 4.62e-05

Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms];


Pssm-ID: 444056 [Multi-domain]  Cd Length: 137  Bit Score: 43.24  E-value: 4.62e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38348382 222 QEEAFRSYFEIF--NGPGEVDAQSLKniLLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMTD 286
Cdd:COG5126  67 VEPFARAAFDLLdtDGDGKISADEFR--RLLTALGVSEEEADELFARLDTDGDGKISFEEFVAAVRD 131
EF-hand_7 pfam13499
EF-hand domain pair;
223-285 8.31e-05

EF-hand domain pair;


Pssm-ID: 463900 [Multi-domain]  Cd Length: 67  Bit Score: 40.70  E-value: 8.31e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38348382   223 EEAFRSYFEIF--NGPGEVDAQSLKNIL--LLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:pfam13499   1 EEKLKEAFKLLdsDGDGYLDVEELKKLLrkLEEGEPLSDEEVEELFKEFDLDKDGRISFEEFLELYS 67
PHA03247 PHA03247
large tegument protein UL36; Provisional
 94-200 2.39e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382    94 KMEASHRRASKARSQTAQKSPRTLTPVPTSAPSlpQTPASVPASGPSWARLPAPGPEPAPMGAPVPTSMPCPVllGPALD 173
Cdd:PHA03247  385 RRSARHAATPFARGPGGDDQTRPAAPVPASVPT--PAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPP--APATE 460

                          90       100
                  ....*....|....*....|....*..
gi 38348382   174 LGWRRMEllhQSSERTLSYAKARQEPE 200
Cdd:PHA03247  461 PAPDDPD---DATRKALDALRERRPPE 484
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 79-167 2.46e-04

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 41.39  E-value: 2.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382   79 GNFRQGFMKCLLEVEkmeashrrASKARSQTAQKSPRTLTPVPTSAPSLPQTPASVPAsgpswarlPAPGPEPAPMGAPV 158
Cdd:PRK05641  23 GKFRVSFEGKTYEVE--------AKGLGIDLSAVQEQVPTPAPAPAPAVPSAPTPVAP--------AAPAPAPASAGENV 86

                         90
                 ....*....|
gi 38348382  159 PTS-MPCPVL 167
Cdd:PRK05641  87 VTApMPGKIL 96
PHA03247 PHA03247
large tegument protein UL36; Provisional
 59-171 8.41e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 8.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382    59 PDRAQQQPQKPAVAAGTQSLGNfRQGFMKCLLEVEKMEASHRRASKARSQTAQKSPrtltPVPTSAPSLPQTPASVPASG 138
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDP-HPPPTVPPPERPRDDPAPGRVSRPRRARRLGRA----AQASSPPQRPRRRAARPTVG 2693

                          90       100       110
                  ....*....|....*....|....*....|...
gi 38348382   139 PSWARLPAPGPEPAPMGAPVPTSMPCPVLLGPA 171
Cdd:PHA03247 2694 SLTSLADPPPPPPTPEPAPHALVSATPLPPGPA 2726
EF-hand_8 pfam13833
EF-hand domain pair;
237-286 1.63e-03

EF-hand domain pair;


Pssm-ID: 404678 [Multi-domain]  Cd Length: 54  Bit Score: 36.52  E-value: 1.63e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 38348382   237 GEVDAQSLKNILLLMGFS-VTLAQVEDALMSADVNGDGRVDFKDFLAVMTD 286
Cdd:pfam13833   3 GVITREELKRALALLGLKdLSEDEVDILFREFDTDGDGYISFDEFCVLLER 53
EFh smart00054
EF-hand, calcium binding motif; EF-hands are calcium-binding motifs that occur at least in ...
 259-285 1.74e-03

EF-hand, calcium binding motif; EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.


Pssm-ID: 197492 [Multi-domain]  Cd Length: 29  Bit Score: 35.82  E-value: 1.74e-03
                           10        20
                   ....*....|....*....|....*..
gi 38348382    259 QVEDALMSADVNGDGRVDFKDFLAVMT 285
Cdd:smart00054   1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27
PTZ00183 PTZ00183
centrin; Provisional
 230-287 2.17e-03

centrin; Provisional


Pssm-ID: 185503 [Multi-domain]  Cd Length: 158  Bit Score: 38.90  E-value: 2.17e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382  230 FEIF--NGPGEVDAQSLKNILLLMGFSVTLAQVEDALMSADVNGDGRVDFKDFLAVMTDT 287
Cdd:PTZ00183  96 FRLFddDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKT 155
EFh_calglandulin_like cd16252
EF-hand, calcium binding motif, found in uncharacterized calglandulin-like proteins; The ...
 209-285 3.06e-03

EF-hand, calcium binding motif, found in uncharacterized calglandulin-like proteins; The family corresponds to a group of uncharacterized calglandulin-like proteins. Although their biological function remain unclear, they show high sequence similarity with human calglandulin-like protein GAGLP, which is an ortholog of calglandulin from the venom glands of Bothrops insularis snake. Both GAGLP and calglandulin are putative Ca2+-binding proteins with four EF-hand motifs. However, members in this family contain only three EF-hand motifs. In this point, they may belong to the parvalbumin-like EF-hand family, which is characterized by the presence of three consecutive EF-hand motifs (helix-loop-helix).


Pssm-ID: 319995 [Multi-domain]  Cd Length: 106  Bit Score: 37.12  E-value: 3.06e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382 209 QNREKSEEQltlkqEEAFRSYFEIFN--GPGEVDAQSLKNILLLMGFSVTLAQVEDA-----LMSADVNGDGRVDFKDFL 281
Cdd:cd16252  27 QKFQTSEQQ-----EEAIRKAFQMLDkdKSGFIEWNEIKYILSTVPSSMPVAPLSDEeaeamIQAADTDGDGRIDFQEFS 101


                ....
gi 38348382 282 AVMT 285
Cdd:cd16252 102 DMVK 105
EF-hand_1 pfam00036
EF hand; The EF-hands can be divided into two classes: signalling proteins and buffering ...
 260-287 3.54e-03

EF hand; The EF-hands can be divided into two classes: signalling proteins and buffering/transport proteins. The first group is the largest and includes the most well-known members of the family such as calmodulin, troponin C and S100B. These proteins typically undergo a calcium-dependent conformational change which opens a target binding site. The latter group is represented by calbindin D9k and do not undergo calcium dependent conformational changes.


Pssm-ID: 425435 [Multi-domain]  Cd Length: 29  Bit Score: 35.07  E-value: 3.54e-03
                          10        20
                  ....*....|....*....|....*...
gi 38348382   260 VEDALMSADVNGDGRVDFKDFLAVMTDT 287
Cdd:pfam00036   2 LKEIFRLFDKDGDGKIDFEEFKELLKKL 29
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 104-178 6.10e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 39.16  E-value: 6.10e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 38348382  104 KARSQTAQKSPRTLTPVPTSAPSLPQTPASVPASGPSWARLPaPGPEPAPM-GAPVPTSMPCPVLLGPALDLG-WRR 178
Cdd:PRK14954 393 KAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQP-PVARSAPLpPSPQASAPRNVASGKPGVDLGsWQG 468
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 96-171 7.63e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 38.30  E-value: 7.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382   96 EASHRRASKARSQTA------QKSPrtLTPVPTSAPSLPQTPASVPASGPSWARLPAPGPEPAPMGAPV-PTSMPCPVLL 168
Cdd:PHA02682  57 EAGRYYQSRLKANSAcmqrpsGQSP--LAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTcPPPAVCPAPA 134


                 ...
gi 38348382  169 GPA 171
Cdd:PHA02682 135 RPA 137
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 92-171 9.17e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 9.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38348382   92 VEKMEASHRRASKAR-SQTAQKSPRTLTPVPTSAPSLPQtPASVPASGPSWARLPAPGPEPAPMGAPVPTSMPCPVLLGP 170
Cdd:PRK07764 378 LERLERRLGVAGGAGaPAAAAPSAAAAAPAAAPAPAAAA-PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456


                 .
gi 38348382  171 A 171
Cdd:PRK07764 457 P 457
PHA03378 PHA03378
EBNA-3B; Provisional
 96-165 9.42e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 38.51  E-value: 9.42e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 38348382   96 EASHRRASKARSQTAQKSPRTLTPVPTSAPSLPQTPASVPASGPSWARLP--APGPEPAPMGAP-VPTSMPCP 165
Cdd:PHA03378 708 AAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPaaAPGRARPPAAAPgAPTPQPPP 780
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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