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Conserved domains on  [gi|38156200|gb|AAR12839|]
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laminin receptor precursor, partial [Anomalospiza imberbis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00254 super family cl36534
40S ribosomal protein SA; Provisional
 1-34 2.78e-15

40S ribosomal protein SA; Provisional


The actual alignment was detected with superfamily member PTZ00254:

Pssm-ID: 240331 [Multi-domain]  Cd Length: 249  Bit Score: 65.08  E-value: 2.78e-15
                         10        20        30
                 ....*....|....*....|....*....|....
gi 38156200    1 REVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE 34
Cdd:PTZ00254 180 REVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEK 213
 
Name Accession Description Interval E-value
PTZ00254 PTZ00254
40S ribosomal protein SA; Provisional
 1-34 2.78e-15

40S ribosomal protein SA; Provisional


Pssm-ID: 240331 [Multi-domain]  Cd Length: 249  Bit Score: 65.08  E-value: 2.78e-15
                         10        20        30
                 ....*....|....*....|....*....|....
gi 38156200    1 REVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE 34
Cdd:PTZ00254 180 REVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEK 213
40S_SA_C pfam16122
40S ribosomal protein SA C-terminus; This domain is found at the C-terminus of 40S ribosomal ...
 23-34 3.22e-05

40S ribosomal protein SA C-terminus; This domain is found at the C-terminus of 40S ribosomal protein SA.


Pssm-ID: 465029  Cd Length: 98  Bit Score: 36.47  E-value: 3.22e-05
                         10
                 ....*....|..
gi 38156200   23 YFYRDPEEIEKE 34
Cdd:pfam16122  1 FFYRDPEEAEKE 12
 
Name Accession Description Interval E-value
PTZ00254 PTZ00254
40S ribosomal protein SA; Provisional
 1-34 2.78e-15

40S ribosomal protein SA; Provisional


Pssm-ID: 240331 [Multi-domain]  Cd Length: 249  Bit Score: 65.08  E-value: 2.78e-15
                         10        20        30
                 ....*....|....*....|....*....|....
gi 38156200    1 REVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE 34
Cdd:PTZ00254 180 REVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEK 213
40S_SA_C pfam16122
40S ribosomal protein SA C-terminus; This domain is found at the C-terminus of 40S ribosomal ...
 23-34 3.22e-05

40S ribosomal protein SA C-terminus; This domain is found at the C-terminus of 40S ribosomal protein SA.


Pssm-ID: 465029  Cd Length: 98  Bit Score: 36.47  E-value: 3.22e-05
                         10
                 ....*....|..
gi 38156200   23 YFYRDPEEIEKE 34
Cdd:pfam16122  1 FFYRDPEEAEKE 12
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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