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Conserved domains on  [gi|380703744|gb|AFD96807|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Parvipsitta porphyrocephala]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 9.51e-152

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 430.01  E-value: 9.51e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   1 NLISATSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWD 80
Cdd:MTH00112   6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWD 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  81 ITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTTMSVMSIALG 160
Cdd:MTH00112  86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 161 GWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLF 240
Cdd:MTH00112 166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 241 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNILI 320
Cdd:MTH00112 246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLT 325

                        330       340
                 ....*....|....*....|
gi 380703744 321 PTLTSLSISLLPLSPMILTT 340
Cdd:MTH00112 326 ATLTTLSTLLLPLSPMILTI 345
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 9.51e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 430.01  E-value: 9.51e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   1 NLISATSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWD 80
Cdd:MTH00112   6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWD 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  81 ITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTTMSVMSIALG 160
Cdd:MTH00112  86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 161 GWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLF 240
Cdd:MTH00112 166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 241 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNILI 320
Cdd:MTH00112 246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLT 325

                        330       340
                 ....*....|....*....|
gi 380703744 321 PTLTSLSISLLPLSPMILTT 340
Cdd:MTH00112 326 ATLTTLSTLLLPLSPMILTI 345
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-293 2.55e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 111.36  E-value: 2.55e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   9 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF-SSMANAQhTGQWDITQL-- 84
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  85 ---TYPPSQLLLTTAI-------AIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPAL------ 148
Cdd:COG1007  191 alaAGGANSPLLLLGLvlvlaglAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLaadwql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 149 -LTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LAFYM--YILMTTSIFLTLNTTNTLKLP 223
Cdd:COG1007  271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKGGE 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380703744 224 TLMTS-----WTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAY 293
Cdd:COG1007  351 AEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 18-263 1.85e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.55  E-value: 1.85e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   18 SNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQL-----------T 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   86 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSIT-TALLLSTLMKLPPTAILLLTS--HSTNPA---LLTTMSVMSIAL 159
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  160 GGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLAFYMYILMTTSIFL-----TLNTTNTLKLPTLMTSWT 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 380703744  231 KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQ 263
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-292 8.02e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 98.48  E-value: 8.02e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744    9 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLTYP 87
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   88 PSQ------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL-------LTSHSTNPAL 148
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  149 LTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLA--FY--MYILMTTSIFLTLNTTNTLKLP- 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380703744  224 ----TLMTSWTKT-PMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLA 292
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 9.51e-152

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 430.01  E-value: 9.51e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   1 NLISATSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWD 80
Cdd:MTH00112   6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWD 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  81 ITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTTMSVMSIALG 160
Cdd:MTH00112  86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 161 GWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLF 240
Cdd:MTH00112 166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 241 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNILI 320
Cdd:MTH00112 246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLT 325

                        330       340
                 ....*....|....*....|
gi 380703744 321 PTLTSLSISLLPLSPMILTT 340
Cdd:MTH00112 326 ATLTTLSTLLLPLSPMILTI 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 7-310 9.20e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 366.82  E-value: 9.20e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   7 SLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLTY 86
Cdd:MTH00135  12 SLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSH 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  87 PPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAiLLLTSHSTNPALLTTMSVMSIALGGWMGLN 166
Cdd:MTH00135  92 PLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFA-LILQIAPTNPTLLITLGLTSTLVGGWGGLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 167 QTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSL 246
Cdd:MTH00135 171 QTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSL 250

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380703744 247 AGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQW 310
Cdd:MTH00135 251 GGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPW 314
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 6-321 1.01e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 353.84  E-value: 1.01e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   6 TSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLT 85
Cdd:MTH00070  11 SSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQ 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  86 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTTMSVMSIALGGWMGL 165
Cdd:MTH00070  91 TPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 166 NQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLS 245
Cdd:MTH00070 171 NQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 380703744 246 LAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNILIP 321
Cdd:MTH00070 251 LGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLS 326
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-321 5.87e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 324.11  E-value: 5.87e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   2 LISATSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDI 81
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  82 TQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTTMSVMSIALGG 161
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 162 WMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFL 241
Cdd:MTH00105 167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 242 TLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSN-KMK-QWSPKKPVNIL 319
Cdd:MTH00105 247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENTKPMTLL 326


                 ..
gi 380703744 320 IP 321
Cdd:MTH00105 327 PT 328
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 7-321 4.11e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.39  E-value: 4.11e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   7 SLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLTY 86
Cdd:MTH00200  12 SLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  87 PPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTTMSVMSIALGGWMGLN 166
Cdd:MTH00200  92 PLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 167 QTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSL 246
Cdd:MTH00200 172 QTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSL 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380703744 247 AGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNILIP 321
Cdd:MTH00200 252 GGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 6-321 5.42e-83

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 255.24  E-value: 5.42e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   6 TSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLT 85
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  86 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTTMSVMSIALGGWMGL 165
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 166 NQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLS 245
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 380703744 246 LAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNILIP 321
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-320 1.02e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 189.65  E-value: 1.02e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   1 NLISATSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQhtgqwd 80
Cdd:MTH00160   7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  81 ITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPtaiLLLTSHSTNPALLTTMSVMSIALG 160
Cdd:MTH00160  81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIILSAIIG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 161 GWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLF 240
Cdd:MTH00160 158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 241 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMKQWSPKKPVNILI 320
Cdd:MTH00160 238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-305 6.40e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 164.18  E-value: 6.40e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   6 TSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSmanaqhTGQWDITQLT 85
Cdd:MTH00011  13 STMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  86 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTTMSVMSIALGGWMGL 165
Cdd:MTH00011  87 KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGM 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 166 NQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLS 245
Cdd:MTH00011 167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 246 LAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYcSTITLPPNPSN 305
Cdd:MTH00011 247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-320 2.27e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 162.75  E-value: 2.27e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   1 NLISATSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWD 80
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  81 ITqltyppsqLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPtaILLLTSHSTNPALLTT---MSVMSI 157
Cdd:MTH00144  86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 158 ALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTlKLPTLMTSWTKTPMLNT 237
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDS-GSMKDLGSLKPSYKTGL 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 238 TLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITlppnpSNKMKQWSPKKPVN 317
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLS-----SSKSKKSNSSKVLN 309


                 ...
gi 380703744 318 ILI 320
Cdd:MTH00144 310 SSI 312
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-308 5.56e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 150.98  E-value: 5.56e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   7 SLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTgqwditqLTY 86
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  87 PPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPtaILLLTSHSTNPALLTTMSVMSIALGGWMGLN 166
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 167 QTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILMTTSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSL 246
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 380703744 247 AGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYCSTITLPPNPSNKMK 308
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 8-291 1.20e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 110.89  E-value: 1.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   8 LLLGTTITITSNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFS-------------SMANA 73
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  74 QHTGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLltSHSTNPALLTTMS 153
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 154 VMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLAFYMYILMTTSIFLTLNTTNTLK--LPTLMT 227
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380703744 228 SWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRL 291
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-293 2.55e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 111.36  E-value: 2.55e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   9 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF-SSMANAQhTGQWDITQL-- 84
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  85 ---TYPPSQLLLTTAI-------AIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPAL------ 148
Cdd:COG1007  191 alaAGGANSPLLLLGLvlvlaglAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLaadwql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 149 -LTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LAFYM--YILMTTSIFLTLNTTNTLKLP 223
Cdd:COG1007  271 lLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKGGE 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380703744 224 TLMTS-----WTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAY 293
Cdd:COG1007  351 AEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 18-263 1.85e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.55  E-value: 1.85e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   18 SNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQL-----------T 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   86 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSIT-TALLLSTLMKLPPTAILLLTS--HSTNPA---LLTTMSVMSIAL 159
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  160 GGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLAFYMYILMTTSIFL-----TLNTTNTLKLPTLMTSWT 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 380703744  231 KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQ 263
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-291 1.13e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 104.13  E-value: 1.13e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   9 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQL--- 84
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  85 ---TYPPSQLLLT------TAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL-------LTSHSTNPAL 148
Cdd:PRK05777 193 ladGSGNSLLLLFglvfllVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvafGGLSEDWQQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 149 LTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LAFYM--YILMTTSIF--LTLNTTNTLKL 222
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISLLRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 380703744 223 PTLmTSWT----KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRL 291
Cdd:PRK05777 353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-291 1.53e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 100.48  E-value: 1.53e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   8 LLLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLTY 86
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  87 PPS----QLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPALLTtmSVMSIALGGW 162
Cdd:MTH00199 186 ILTgdvgKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 163 MGLNQTQTRKILAFSSISHLGWMT--IIIIYNPKLTLLAFYM--YILMTT---SIFLTLNTTNTLKLPTLMTSwTKTPML 235
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILfgVAIGSFESIQASLIYMiiYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVI 342

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 380703744 236 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRL 291
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 9-292 8.02e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 98.48  E-value: 8.02e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744    9 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLTYP 87
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   88 PSQ------------LLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL-------LTSHSTNPAL 148
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  149 LTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLA--FY--MYILMTTSIFLTLNTTNTLKLP- 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380703744  224 ----TLMTSWTKT-PMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLA 292
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-291 7.59e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.74  E-value: 7.59e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   8 LLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQL--- 84
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  85 --TYPPSQL-----LLTTAIAIKLGLTPFHFWFPEVL-QGSSITTALLLSTLMKLPPTAIL----LLTSHSTNPA---LL 149
Cdd:COG0651  196 laELDPGLLlaafaLLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILrvltLLFGADPALFlgtLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 150 TTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYI----LMTTSIFLT----LNTTNTLK 221
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRD 355

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 222 LPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRL 291
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 10-291 3.13e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.52  E-value: 3.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  10 LGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAI---------EASTKYFLTQAAASALVLFSSMANAQHTGQ-- 78
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  79 --WDITQLTYPPSQ----------LLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLppTAILLLTSHSTNP 146
Cdd:MTH00198 279 mlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 147 ALLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYILM-TTSIFLTLNTTNTL----- 220
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALASFTVICTLeefgt 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 221 -------------------KLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLS 281
Cdd:MTH00198 437 rtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                        330
                 ....*....|....*..
gi 380703744 282 LLGL-------FFYLRL 291
Cdd:MTH00198 517 LFAIictcisaFYYIRI 533
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 33-187 7.35e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.87  E-value: 7.35e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  33 LAIIP---LISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQW-----DITQLTYPPSQ-----LLLTTAIAI 99
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAqlllfLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 100 KLGLTPFHFWFPEVL-QGSSITTALLLSTLMK----------LPptaILLLTSHSTNPALLTtMSVMSIALGGWMGLNQT 168
Cdd:COG1008  222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                        170
                 ....*....|....*....
gi 380703744 169 QTRKILAFSSISHLGWMTI 187
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-293 2.42e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 64.52  E-value: 2.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  28 LELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLT--YPPSQLLLT------TAIAI 99
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 100 KLGLTPFHFWFPEVLQG-SSITTALLLSTLMKLPPTAILLLTSHSTNPA---------LLTTMSVMSIALGGWMGLNQTQ 169
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGDfrfalglgwLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 170 TRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYI----LMTTSIFLTLN----TTNTLKLPTLMTSWTKTPMLNTTLFL 241
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 380703744 242 TLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAY 293
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-313 1.47e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.04  E-value: 1.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  28 LELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFssmANAQHTGQWDITQLTYPPSQL-------------LL 93
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLL---GIALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  94 TTAIAIKLGLTPFHFWFPEVLQG--SSITTALLLSTLMKLPPTAILLLT------SHSTNPALLTTMSVMSIALGGWMGL 165
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiygpaiNLATVGWVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 166 NQTQTRKILAFSSISHLGWMTI---IIIYNPKLTLLAFYMYILMTTSIFLTLN-----------------TTNTLKLPTL 225
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLNEL 386

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 226 MTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQelTKQEMTPTATIISML-SLLGLFFYLRLAYcSTITLPPNPS 304
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH-TAFFGPPSEK 463


                 ....*....
gi 380703744 305 NKMKQWSPK 313
Cdd:PRK08376 464 VMNVKEPPK 472
ndhB CHL00049
NADH dehydrogenase subunit 2
 46-258 2.33e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 61.56  E-value: 2.33e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  46 RAIEASTKYFLTQAAASALVL--FSSM--ANAQHTGQWDI------TQLTYPPSQLL----LTTAIAIKLGLTPFHFWFP 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 112 EVLQGSSITTALLLSTLMKLPPTAIL-----LLTSHSTNP--ALLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGW 184
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALAtrifdIPFYFSSNEwhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 185 MTIIII-------YNPKLTLLAFYmyilmttsIFLTLNTTNTLKLPTLMT----------SWTKTPMLNTTLFLTLLSLA 247
Cdd:CHL00049 319 VIIGIIvgdsndgYASMITYMLFY--------IFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLG 390

                        250
                 ....*....|.
gi 380703744 248 GLPPLTGFLPK 258
Cdd:CHL00049 391 GIPPLAGFFGK 401
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 45-283 1.61e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 58.80  E-value: 1.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   45 PRAIEASTKYFLTQAAASALVLFSSMANA-QHTGQWDITQLT----YPPSQLLLTTAI----AIKLGLTPFHFWFPEVLQ 115
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTFDLLELLnlplPFGVQTWLFLAFfiafAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  116 GSSITTALLLS-TLMKLPPTAILLL-------TSHSTNPaLLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 187
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  188 -IIIYNPKLTLLAFYMYI---LMTTSIFLTLNT----TNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKW 259
Cdd:TIGR01972 311 gIFSFNELGISGAVFQMIshgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250       260
                  ....*....|....*....|....
gi 380703744  260 LIIQELTKqeMTPTATIISMLSLL 283
Cdd:TIGR01972 391 LILLGSFK--VNPVVAFLAALGIV 412
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
45-258 3.26e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 57.75  E-value: 3.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  45 PRAIEASTKYFLTQAAASALVLF-SSMANAQHTGQWDIT----QLTYPPSQLLLTT------AIAIKLGLTPFHFWFPEV 113
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 114 LQGSSITTALLLSTLMKLP--PTAILLLTSHSTN-----PALLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMT 186
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfALAIRLLVTAFPSfdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 187 IIIIYNPK--LTLLAFYM--YILMT----TSIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPK 258
Cdd:PRK02504 317 IGLVAGTEagYASMVFYLlaYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 8-189 1.86e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 55.53  E-value: 1.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   8 LLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAA------SALVLFSSMANAQHTGQWDI 81
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  82 TQLT-----YPPSQLLLT-----TAIAIKLGLTPFHFWFPEV-LQGSSITTALLLSTLMKLPPTAILLLTS-------HS 143
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 380703744 144 TNPALLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 189
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 25-293 5.79e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 54.23  E-value: 5.79e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  25 WTGLELNTLAIIPLISKshhpRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQ----LTYPPSQ-------LLL 93
Cdd:PRK08668 127 WEIMTFSSFMMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTSTgfalivfLFL 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  94 TTAIAIKLGLTPFHFWFPE-----------VLQG--SSITTALLLSTLMKLPPTAILL----LTSHSTNPALLTTMSVMS 156
Cdd:PRK08668 203 LAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFNYILAWLGNIS 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 157 IALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYI----LMTTSIFLTLNT----TNTLKLPTLMTS 228
Cdd:PRK08668 283 IIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVfnhaLFKGLFFLIFAAviyrTGTTKISEMGGL 362

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380703744 229 WTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAY 293
Cdd:PRK08668 363 IEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 45-189 1.99e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.51  E-value: 1.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  45 PRAIEASTKYFLTQAAASALVLFSSMA----NAQHTGQWDITQLTYPP----SQLLLTTAI----AIKLGLTPFHFWFPE 112
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLLNLPlppgVQYWLFLAFfiafAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 113 VLQ-----GSSITTALLLST--------LMKLPPTAillltSHSTNPaLLTTMSVMSIALGGWMGLNQTQTRKILAFSSI 179
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMgaygllrfSLPLFPDA-----SHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSI 310

                        170
                 ....*....|
gi 380703744 180 SHLGWMTIII 189
Cdd:PRK05846 311 SHMGFVTLGI 320
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 50-189 3.36e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 51.57  E-value: 3.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  50 ASTKYFLTQAAASALVLFSSMANAQHTGQ--WDITQLT---YPPS-QLLLTT----AIAIKLGLTPFHFWFPEVL-QGSS 118
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLAlELLLYAgfliAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 380703744 119 ITTALLLSTLMKLPPTAI------LLLTSHSTNPALLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 189
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 74-258 3.69e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.85  E-value: 3.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  74 QHTGQWDITQL-TYPPSQLLLTTAIAI-------KLGLTPFHFWFPEVLQGSSITTALLLSTLM---------KLPPtai 136
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAP--- 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 137 llltSHSTNPALLTTMSVMSIA---LGGWMGLNQTQTRKILAFSSISHLGWMTIII-IYNPKLTLLAFYMYI---LMTTS 209
Cdd:PRK12644 259 ----GFADVPVWRPTVLVLGLAtmlLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMLLahaLFKAA 334

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 380703744 210 IFLTL----NTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPK 258
Cdd:PRK12644 335 LFLVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-187 4.03e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 51.47  E-value: 4.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   1 NLISATSLLlgttiTITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSS----------M 70
Cdd:PRK06458 115 QLFLFTMLL-----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvM 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  71 ANAQHTGQWdiTQLTYPPSQL---LLTTAIAI-------KLGLTPFHFWFPEV-LQGSSITTALLLSTLMKLPPTAI--- 136
Cdd:PRK06458 190 GDGEMAILW--TELLKHASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVlry 267

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 380703744 137 --LLLTSHSTNPA--LLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 187
Cdd:PRK06458 268 yiLIDAAIGSDFPgrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12650 PRK12650
DUF4040 family protein;
24-258 8.44e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 47.73  E-value: 8.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  24 AWtglELNTLAIIPLISKSHhPRAIEASTKYFLTqAAASALVLFSSMA-NAQHTGQWDITQLTYPPS---QLLLTTAIAI 99
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLIL-TFFGGLTLLAAVAiAATQTGTTSLSGILHSDVwaeKPGLTTVVAV 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 100 KLGLT--------PFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTS--HSTNPA---LLTTMSVMSIALGGWMGLN 166
Cdd:PRK12650 213 LIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALMGAVFAVQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 167 QTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYI----LMTTSIFLTL----NTTNTLKLPTLMTSWTKTPMLNTT 238
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVS 372

                        250       260
                 ....*....|....*....|
gi 380703744 239 LFLTLLSLAGLPPLTGFLPK 258
Cdd:PRK12650 373 VTIAALSMAAVPPLFGFVSK 392
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
33-280 9.57e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.00  E-value: 9.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  33 LAIIPL---ISKSHHPRAIEASTKYFLTQAAASALVL--FSSMANAQHTGQWDITQL---TYP-PSQLLLTTAI----AI 99
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILvsFLGLVWLSGASSFDYEPLrshTLPlSTQLLLLAPIlvgfGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 100 KLGLTPFHFWFPEV-LQGSSITTALLLSTLMKLPPTAIL------LLTSHSTNPALLTTMSVMSIALGGWMGLNQTQTRK 172
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 173 ILAFSSISHLGWMTIIIIYNPKLTLLAFYMYI----LMTTSIFLTL-------NTTNTLKLPTLMTSWTKTPMLNTTLFL 241
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSILAAVFQMishgLISALLFLLVgvvykktGSRDVDVLRGLLNPERGLPITGSLMIL 377

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 380703744 242 TLLSLAGLPPLTGFLPKWLIIQelTKQEMTPTATIISML 280
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLVFR--GSFPIFPVQTLLCMI 414
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 86-284 3.58e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 45.68  E-value: 3.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  86 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLS-TLMKLpptAILLLTShsTNPAL---------LTTMSVM 155
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSaTMVKA---GIYLLAR--LNPVLggtplwqtiLPLFGGL 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 156 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYI----LMTTSIFLTLNT----TNTLKLPTLMT 227
Cdd:PRK12647 269 TMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGG 348

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 380703744 228 SWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTkqEMTPTATIISMLSLLG 284
Cdd:PRK12647 349 LRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-266 4.38e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.94  E-value: 4.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  28 LELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQL-TYPPSQL-LLTTAIAIKLGLTP 105
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLaTADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 106 FHFWFPEVLQGSSITTALLLS-TLMKLPPTAILLLTSHSTNPAL-LTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLG 183
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 184 WmtiiIIYNPKLTLLAFYMYILMTTSIFL---TLNTTNTLKLPTLMT-SWTKTPMlnttlFLTLLSLAGLPPLTGFLPKW 259
Cdd:PRK07234 283 F----ILAAPLVGGLYALAHGLVKSTLFLcagALPSRNFTELISQMLgIGKWIPL-----TMASFSIAGFPLLAGFVSKV 353


                 ....*..
gi 380703744 260 LIIQELT 266
Cdd:PRK07234 354 LTLKNLL 360
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
29-303 5.90e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 44.64  E-value: 5.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  29 ELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLTY-----PPSQLLLTTAIAIKLG- 102
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 103 -----LTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL--------LTSHSTNPALLTTMSVMSIALGGWMGLNQTQ 169
Cdd:PRK06277 210 lygsgLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 170 TRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMY----ILMTTSIFLTL-------NTTNTLKLPTLMTSwtkTPMLNTT 238
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHainhVIYKSALFLGAgivsyrtKTSNLRKLGGLLPV---MPVVAFM 366

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380703744 239 LFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYLRLAYcsTITLPPNP 303
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 43-258 1.21e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.05  E-value: 1.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  43 HHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQLTYPPS--------QLLLTTAIAIKLGLT------PFHF 108
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghPLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 109 WFPEVLQGSSITTALLLSTLMkLPPTAILLLTSH---STNPA---LLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHL 182
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHpifSGTEAwfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 183 GWMTIIIIYN----PKLTLLAFYMYILMTTSIFLTL--------NTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLP 250
Cdd:PRK12649 315 AYLMTMYGYTtyhePGLGVAAATFHLLNHATFKACLflvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 380703744 251 PLTGFLPK 258
Cdd:PRK12649 395 PLNGFLSK 402
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 16-265 1.24e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.60  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  16 ITSNHWMMAWTGLELNTLAIIPLISKSHH-PRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDITQL-----TYPPS 89
Cdd:COG1009  128 VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSS 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  90 QLLLTTAIAI------KLGLTPFHFWFPEVLQGSSITTALLLSTLMKlppTA--ILLLTSH---STNPALLTTMSVMSIA 158
Cdd:COG1009  208 PLLTLILLLLllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMV---KAgvYLLARLSplfALSPVWLTVVAIIGAI 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 159 ---LGGWMGLNQTQTRKILAFSSISHLGWMTIII---IYNPKLTLL---AFYMYIL-MTT-SIFLTLNTTNTLKLPTLmt 227
Cdd:COG1009  285 talFAALIALAQTDIKRVLAYSTVSQLGYMFLALgvgAYVAALFHLlthAFFKALLfLGAgSVIHATGTRDIRKMGGL-- 362

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 380703744 228 sWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQEL 265
Cdd:COG1009  363 -RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 90-263 2.16e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.03  E-value: 2.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  90 QLLLTTAIAIKLGLTPFHFWFPEVL-QGSSITTALLLSTLMKLPPTAI-----LLLTSHSTNPAL----LTTMSVmsial 159
Cdd:PRK12665 212 FAVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVFAGLLTKVGVYAIirthtLLFPGGGLDTLLmvvaLLTMVV----- 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 160 gGWMG-LNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLA--FYM--YILMTTSIFLTLN-------TTNTLKLPTLMT 227
Cdd:PRK12665 287 -GILGaIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGaiYYVahHITVQTTLFLVVGlierqagSSSLRRLGGLAK 365

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 380703744 228 SwtkTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQ 263
Cdd:PRK12665 366 A---SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 91-267 5.20e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.74  E-value: 5.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  91 LLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTL-MKLPPTAILLLTSHSTNPAL-----LTTMSVMSIALGGWMG 164
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 165 LNQTQTRKILAFSSISHLG--------WMTIIIIYNPKLTLLAFY--MYILMTTSIFLTL---------NTTNTLKLPTL 225
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 380703744 226 MTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTK 267
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
50-263 5.85e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 5.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  50 ASTKYFLTQAAASALVL--FSSMANAQHTGQWD----ITQLTYPPSQLLLTTAI----AIKLGLTPFHFWFPEVLQGSSI 119
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLaaFLGIVWLSGSTSFDydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 120 TTALLL-STLMKLPPTAILLL-------TSHSTNPAlLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIY 191
Cdd:PRK07363 238 AVAILLgGVLAKLGTYGLLRFglqlfpqTWSLVAPG-LAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 192 NPKLTLLAfYMYILMTTSIFLTL------------NTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKW 259
Cdd:PRK07363 317 GTQLSLLG-AVAQMISHGLILALlfhlvgiverkvGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEF 395


                 ....
gi 380703744 260 LIIQ 263
Cdd:PRK07363 396 IVFQ 399
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 96-190 5.94e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.45  E-value: 5.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  96 AIAIKLGLTPFHFWFPEVLQGSSITTALLLS-TLMKLPPTA-------ILLLTSHSTNPALLtTMSVMSIALGGWMGLNQ 167
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGlvrlswpILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 380703744 168 TQTRKILAFSSISHLGWMTIIII 190
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 149-262 9.61e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.87  E-value: 9.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 149 LTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLAFYMYI----LMTTSIFLTLNTT----NTL 220
Cdd:PRK12662 282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTT 361

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 380703744 221 KLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLII 262
Cdd:PRK12662 362 KLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 48-187 3.04e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 39.28  E-value: 3.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  48 IEASTKYFLTQAAASALVLFSSMANAQHTGQWD-----ITQLTYPPSQLLLT---TAIAIKLGLTPFHFWFPEVLQGSSI 119
Cdd:MTH00204 162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDyqillNIKLPLSIQKWLLVgffLSLAVKIPQIPFHIWLPQAHVEAPV 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 380703744 120 TTALLLS-TLMKLP-------PTAILLLTSHSTNPaLLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 187
Cdd:MTH00204 242 AGSVILAgILLKLGgygflrfSWPLFPAASEYFAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPL 316
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 50-189 3.78e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.92  E-value: 3.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  50 ASTKYFLTQAAASALVLFSSMANAQHTG--QWDITQL---TYPPS-QLLLTT----AIAIKLGLTPFHFWFPEVLQGSSI 119
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALaakDFGLGfQLLCYAglliAYGVKLPIVPLHTWLPDAHGEATA 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 380703744 120 TTALLLS-TLMKLPPTAIL------LLTSHSTNPALLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 189
Cdd:PRK02546 246 PVHMLLAgILLKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
8-185 5.56e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.53  E-value: 5.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744   8 LLLGTTITITSNHW---MMAW--TGLELNTLaiipLISKSHHPRAIEASTKYFLTQAAASALVLFSSMANAQHTGQWDIT 82
Cdd:PRK08168 109 VLAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  83 QL--------TYPPSQ---LLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTL-----MKLPPTAILLLTSHSTNp 146
Cdd:PRK08168 185 ALwahlaaqgASPSLQaaaLLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggFVLIRFAPLLEQAPPAR- 263

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 380703744 147 ALLTTMSVMSIALGGWMGLNQTQTRKILAFSSISHLGWM 185
Cdd:PRK08168 264 WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
91-293 7.30e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.01  E-value: 7.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744  91 LLLTTAIAIKLGLTPFhFWFPEVLQGSSITTALLLSTLMK------LPPTAILLLTSHS--TNPaLLTTMSVMSIALGGW 162
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyaLIRVFTLLFPQERelLHP-LLATMAAITMVIGAL 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380703744 163 MGLNQTQTRKILAFSSISHLGWMTI-IIIYNPK-LTLLAFYMY--ILMTTSIFLTLNTTNTL----KLPTLMTSWTKTPM 234
Cdd:PRK12663 289 GALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVhdMVVKTALFLIAGSLVRLtgyrSLQYLGGLYRKEPL 368

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 380703744 235 LNTTLFLTLLSLAGLPPLTGFLPKWLIIQ-ELTKQEMTPTATII--SMLSLLGLFFYLRLAY 293
Cdd:PRK12663 369 FGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALMLitSLITMYSLFRIFFLAY 430
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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