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Conserved domains on  [gi|380092654|emb|CCC09931|]
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unnamed protein product [Sordaria macrospora k-hell]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Atrophin-1 super family cl38111
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 445-621 7.00e-07

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


The actual alignment was detected with superfamily member pfam03154:

Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 52.85  E-value: 7.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  445 GSQAYGMNAQTPLSPAPMYTMFANpSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTP---MHFVIPA---QFVAGAFP 518
Cdd:pfam03154 210 GSPATSQPPNQTQSTAAPHTLIQQ-TPTLHPQRLPSPHPPLQPMTQPPPPSQVSPQPLPqpsLHGQMPPmphSLQTGPSH 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  519 MTSPGngsapPSQGFPWNPFSPG----PAPTWNAPGPSKPSPSDdPSSQPEPSTKAEPEITTKDTKPTPVVSVYDVNTTP 594
Cdd:pfam03154 289 MQHPV-----PPQPFPLTPQSSQsqvpPGPSPAAPGQSQQRIHT-PPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTP 362

                         170       180       190
                  ....*....|....*....|....*....|...
gi 380092654  595 SPP---SRSSTVPTSKSDPSD---NEGLTPHPA 621
Cdd:pfam03154 363 IPQlpnPQSHKHPPHLSGPSPfqmNSNLPPPPA 395
 
Name Accession Description Interval E-value
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 445-621 7.00e-07

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 52.85  E-value: 7.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  445 GSQAYGMNAQTPLSPAPMYTMFANpSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTP---MHFVIPA---QFVAGAFP 518
Cdd:pfam03154 210 GSPATSQPPNQTQSTAAPHTLIQQ-TPTLHPQRLPSPHPPLQPMTQPPPPSQVSPQPLPqpsLHGQMPPmphSLQTGPSH 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  519 MTSPGngsapPSQGFPWNPFSPG----PAPTWNAPGPSKPSPSDdPSSQPEPSTKAEPEITTKDTKPTPVVSVYDVNTTP 594
Cdd:pfam03154 289 MQHPV-----PPQPFPLTPQSSQsqvpPGPSPAAPGQSQQRIHT-PPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTP 362

                         170       180       190
                  ....*....|....*....|....*....|...
gi 380092654  595 SPP---SRSSTVPTSKSDPSD---NEGLTPHPA 621
Cdd:pfam03154 363 IPQlpnPQSHKHPPHLSGPSPfqmNSNLPPPPA 395
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 449-699 7.86e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.87  E-value: 7.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  449 YGMNAQTPLSPAPMYTMFANPSSSSGAPFFVYAAPPGSPMATPDwaSVTPQQGTPMHFVIPAqfVAGAFPMTSPGNGSAP 528
Cdd:PHA03307   37 SGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAP--ANESRSTPTWSLSTLA--PASPAREGSPTPPGPS 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  529 PSQGFPWNPFSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPTP------VVSVYDVNTTPSPPSRSST 602
Cdd:PHA03307  113 SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAssrqaaLPLSSPEETARAPSSPPAE 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  603 VPTSK------------SDPSDNEGLTPHPANLRRADTDLtliGQPSSNLDAGGQTGrqtSGQGFEGVAADPNTLSYFPA 670
Cdd:PHA03307  193 PPPSTppaaasprpprrSSPISASASSPAPAPGRSAADDA---GASSSDSSSSESSG---CGWGPENECPLPRPAPITLP 266

                         250       260
                  ....*....|....*....|....*....
gi 380092654  671 VAIAEASveeEGQEAERRTGEGDNAGGTG 699
Cdd:PHA03307  267 TRIWEAS---GWNGPSSRPGPASSSSSPR 292
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 509-615 8.06e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.45  E-value: 8.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 509 PAQFVAGAFPMTSPGNGSAPPSQGfPWNPFSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKdtkpTPVVSVY 588
Cdd:COG3266  258 PSQASSASAPATTSLGEQQEVSLP-PAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAA----KPVVTET 332

                         90       100       110
                 ....*....|....*....|....*....|.
gi 380092654 589 DVNTTPSPPSRSS----TVPTSKSDPSDNEG 615
Cdd:COG3266  333 AAPAAPAPEAAAAaaapAAPAVAKKLAADEQ 363
 
Name Accession Description Interval E-value
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 445-621 7.00e-07

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 52.85  E-value: 7.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  445 GSQAYGMNAQTPLSPAPMYTMFANpSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTP---MHFVIPA---QFVAGAFP 518
Cdd:pfam03154 210 GSPATSQPPNQTQSTAAPHTLIQQ-TPTLHPQRLPSPHPPLQPMTQPPPPSQVSPQPLPqpsLHGQMPPmphSLQTGPSH 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  519 MTSPGngsapPSQGFPWNPFSPG----PAPTWNAPGPSKPSPSDdPSSQPEPSTKAEPEITTKDTKPTPVVSVYDVNTTP 594
Cdd:pfam03154 289 MQHPV-----PPQPFPLTPQSSQsqvpPGPSPAAPGQSQQRIHT-PPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTP 362

                         170       180       190
                  ....*....|....*....|....*....|...
gi 380092654  595 SPP---SRSSTVPTSKSDPSD---NEGLTPHPA 621
Cdd:pfam03154 363 IPQlpnPQSHKHPPHLSGPSPfqmNSNLPPPPA 395
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 455-620 7.32e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 52.61  E-value: 7.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  455 TPLSPAPMYTMFANPSSSSGAPFFVYA----APPGSPMATPDWASVTpqqgTPMhfviPAQFVAGAFPMT-SP-----GN 524
Cdd:pfam05109 428 TTTSPTLNTTGFAAPNTTTGLPSSTHVptnlTAPASTGPTVSTADVT----SPT----PAGTTSGASPVTpSPsprdnGT 499

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  525 GSAPPSQGFPWNPFSPgPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITT---KDTKPTPVVsvydvnTTPSPpsrSS 601
Cdd:pfam05109 500 ESKAPDMTSPTSAVTT-PTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTptpNATSPTPAV------TTPTP---NA 569

                         170
                  ....*....|....*....
gi 380092654  602 TVPTSKSDPSDNEGLTPHP 620
Cdd:pfam05109 570 TIPTLGKTSPTSAVTTPTP 588
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 449-699 7.86e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.87  E-value: 7.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  449 YGMNAQTPLSPAPMYTMFANPSSSSGAPFFVYAAPPGSPMATPDwaSVTPQQGTPMHFVIPAqfVAGAFPMTSPGNGSAP 528
Cdd:PHA03307   37 SGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAP--ANESRSTPTWSLSTLA--PASPAREGSPTPPGPS 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  529 PSQGFPWNPFSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPTP------VVSVYDVNTTPSPPSRSST 602
Cdd:PHA03307  113 SPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAssrqaaLPLSSPEETARAPSSPPAE 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  603 VPTSK------------SDPSDNEGLTPHPANLRRADTDLtliGQPSSNLDAGGQTGrqtSGQGFEGVAADPNTLSYFPA 670
Cdd:PHA03307  193 PPPSTppaaasprpprrSSPISASASSPAPAPGRSAADDA---GASSSDSSSSESSG---CGWGPENECPLPRPAPITLP 266

                         250       260
                  ....*....|....*....|....*....
gi 380092654  671 VAIAEASveeEGQEAERRTGEGDNAGGTG 699
Cdd:PHA03307  267 TRIWEAS---GWNGPSSRPGPASSSSSPR 292
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
453-685 3.22e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.64  E-value: 3.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 453 AQTPLSPAPMYTMFANPSSSSGAPffVYAAPPGSPMATPDWASVTPQQG--TPMHFVIPAQFVAGAFPMTSPGNGSAPPS 530
Cdd:PRK12323 422 APARRSPAPEALAAARQASARGPG--GAPAPAPAPAAAPAAAARPAAAGprPVAAAAAAAPARAAPAAAPAPADDDPPPW 499

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 531 QGFPWNPFSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPeittkdtKPTPVVSVYDVNTTPSPPSRSSTVPTSKSDP 610
Cdd:PRK12323 500 EELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL-------APAPAAAPAPRAAAATEPVVAPRPPRASASG 572

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380092654 611 SDNEGLTPHPANLRRadtdLTLIGQPSsnldaggQTGRQTSGQGFEGVAadpnTLSYFPAVAIAEASVEEEGQEA 685
Cdd:PRK12323 573 LPDMFDGDWPALAAR----LPVRGLAQ-------QLARQSELAGVEGDT----VRLRVPVPALAEAEVVERLQAA 632
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 444-611 9.28e-06

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 49.00  E-value: 9.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  444 SGSQAYGMNAQTPLSPA--PMYTMfANPSSSSGAPFFVYAAPPGSPMATPdwasvtPQQgTPMHFVIPAQFVAGAFPMTS 521
Cdd:pfam03154 379 SGPSPFQMNSNLPPPPAlkPLSSL-STHHPPSAHPPPLQLMPQSQQLPPP------PAQ-PPVLTQSQSLPPPAASHPPT 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  522 PGNGSAPPSQGFPWNPFSPGPAPTWNAP-GPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPTPVVSVY---------DVN 591
Cdd:pfam03154 451 SGLHQVPSQSPFPQHPFVPGGPPPITPPsGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQikeealdeaEEP 530

                         170       180
                  ....*....|....*....|.
gi 380092654  592 TTPSPPSRS-STVPTSKSDPS 611
Cdd:pfam03154 531 ESPPPPPRSpSPEPTVVNTPS 551
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
469-621 1.59e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 1.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 469 PSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTPMHFVIPAQFVAGAFPMTSPGNGSAPPSQGFPWNPFSPGPAPTWNA 548
Cdd:PRK07003 383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 380092654 549 PGPSKPSPSDDPSSQPEPSTKAEPEITTKDTkpTPVVSVYDVNTTPSPPSRSSTVPTSKSDPSDNEGLTPHPA 621
Cdd:PRK07003 463 CDERDAQPPADSGSASAPASDAPPDAAFEPA--PRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 438-620 1.75e-05

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 48.22  E-value: 1.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  438 SRQFEASGSQAYGMNAQTPLSPAPMYTMFANPSSSSGAPffvyaaPPGSPMATPdwasvtpqQGTPMHFVIPAQFVAGAF 517
Cdd:pfam03154 161 SAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGP------TPSAPSVPP--------QGSPATSQPPNQTQSTAA 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  518 PMTSPGNGSAP-----PSQGFPWNPFSPGPAPTWNAPGPSkPSPSDDPSSQPEP-STKAEPEITTKDTKPTPVVSVYDVN 591
Cdd:pfam03154 227 PHTLIQQTPTLhpqrlPSPHPPLQPMTQPPPPSQVSPQPL-PQPSLHGQMPPMPhSLQTGPSHMQHPVPPQPFPLTPQSS 305

                         170       180       190
                  ....*....|....*....|....*....|....
gi 380092654  592 TTPSPPSRSSTVP-----TSKSDPSDNEGLTPHP 620
Cdd:pfam03154 306 QSQVPPGPSPAAPgqsqqRIHTPPSQSQLQSQQP 339
PHA03247 PHA03247
large tegument protein UL36; Provisional
 426-637 2.32e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 2.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  426 GKRPEVHEKEAFSRQFEASGSQAYGMNA-QTPLSPAPMYTMFANPSSSSGAPFFVYAAPPGSPMATPDWASVT-PQQGTP 503
Cdd:PHA03247 2705 PPTPEPAPHALVSATPLPPGPAAARQASpALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAgPPRRLT 2784

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  504 MHFVIPAQFVAGAFPMTS-PGNGSAPPSQGFPWNPFSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKDT--- 579
Cdd:PHA03247 2785 RPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrr 2864

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380092654  580 KPTPVVSVYDVNTTPSPPSRS------STVPTSKSDPSDNEGLTPHPANLRRADTDLTLIGQPS 637
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRlarpavSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
PRK11901 PRK11901
hypothetical protein; Reviewed
 458-613 2.48e-05

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 46.99  E-value: 2.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 458 SPAPMYTMFANPSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTPMHFVIPAQfVAGAFPMTSPGNGSAPPSQ------ 531
Cdd:PRK11901  83 GSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQT-PNGQQRIELPGNISDALSQqqgqvn 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 532 GFPWNPFSPG----PAPTWNAPGPSKPSPSDDPSS--QPEPSTKAEPEITTKDTKPTPVVSVydvnTTPSPPSRSSTVPT 605
Cdd:PRK11901 162 AASQNAQGNTstlpTAPATVAPSKGAKVPATAETHptPPQKPATKKPAVNHHKTATVAVPPA----TSGKPKSGAASARA 237


                 ....*...
gi 380092654 606 SKSDPSDN 613
Cdd:PRK11901 238 LSSAPASH 245
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 446-638 2.91e-05

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 47.45  E-value: 2.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  446 SQAYGMNAQTPLSPAPmytmfaNPSSSSGAPFFVYAAPPgSPMATPDW----ASVTPQQGTPMHFVIPAQfVAGAFPMTS 521
Cdd:pfam03154 315 PAAPGQSQQRIHTPPS------QSQLQSQQPPREQPLPP-APLSMPHIkpppTTPIPQLPNPQSHKHPPH-LSGPSPFQM 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  522 PGNGSAPPSqgfpWNPFSPgpAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPTPVVSVYDVNTTPSPPSRSS 601
Cdd:pfam03154 387 NSNLPPPPA----LKPLSS--LSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQS 460

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 380092654  602 TVPTSKSDPSDNEGLTPHPANLRRADTDLTLIGQPSS 638
Cdd:pfam03154 461 PFPQHPFVPGGPPPITPPSGPPTSTSSAMPGIQPPSS 497
PHA03247 PHA03247
large tegument protein UL36; Provisional
 455-670 2.94e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 2.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  455 TPLSPAPmytmfanPSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTPMHFVIPAQfVAGAFPMTSPGNGSAPPSQGFP 534
Cdd:PHA03247 2765 GPPAPAP-------PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP-AAALPPAASPAGPLPPPTSAQP 2836

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  535 WNP-FSPGPAPTWNAPG----PSKPSPSDDPSSQP--EPSTKAEPEITtKDTKPTPVVSVYDVNTTPSPPSR-----SST 602
Cdd:PHA03247 2837 TAPpPPPGPPPPSLPLGgsvaPGGDVRRRPPSRSPaaKPAAPARPPVR-RLARPAVSRSTESFALPPDQPERppqpqAPP 2915

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 380092654  603 VPTSKSDPSDNEGLTPHPANLRRADTDLTLIGQPSSNLDAGGQTGRQTSGQGFEGVAADPNTLSYFPA 670
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA 2983
PHA03247 PHA03247
large tegument protein UL36; Provisional
 482-621 3.14e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 3.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  482 APPGSPMATPDwASVTPQQGTP-----------MHFVIPAQFVAGAFPMTSPGNGSAPPSqgfpwnPFSPGPAPTwnAPG 550
Cdd:PHA03247 2555 LPPAAPPAAPD-RSVPPPRPAPrpsepavtsraRRPDAPPQSARPRAPVDDRGDPRGPAP------PSPLPPDTH--APD 2625

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  551 PSKPSPSDDPSSQPEPSTKAEPEITTKDTKPTPV-VSVYDVNTTPSPPSRSSTVP---------------TSKSDPSDNE 614
Cdd:PHA03247 2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGrVSRPRRARRLGRAAQASSPPqrprrraarptvgslTSLADPPPPP 2705


                  ....*..
gi 380092654  615 GlTPHPA 621
Cdd:PHA03247 2706 P-TPEPA 2711
PHA03377 PHA03377
EBNA-3C; Provisional
 408-610 3.23e-05

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 47.35  E-value: 3.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  408 LEEARASSIkvqesglgNGKRPEVHEKEAFSRQFEASGSQAYGMNAQTPLSPAPMYTMFANPSSSSgAPFFVYAAPPgsp 487
Cdd:PHA03377  701 SEESHLSSM--------SPTQPISHEEQPRYEDPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQ-APYPGYWEPR--- 768

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  488 matPDWASVTPQQGTPMHFVIPAQFVAGAFPMTS-----------------PGNGsapPSQGfPWNPFSPGPAPTWN-AP 549
Cdd:PHA03377  769 ---PPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLraqhpryrhswaywsqyPGHG---HPQG-PWAPRPPHLPPQWDgSA 841

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 380092654  550 GPSKPSPSDDPSSQPEPStkaepeittkdtKPTPVVSVYDVNTTPSPPSRSSTVPTSKSDP 610
Cdd:PHA03377  842 GHGQDQVSQFPHLQSETG------------PPRLQLSQVPQLPYSQTLVSSSAPSWSSPQP 890
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 377-616 3.93e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.39  E-value: 3.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  377 LQMLSEAITIRKLKNNQREELQDVRQEFEDQLEEARASSIKVQESGLGNGKRPEVHEKEA--------------FSRQFE 442
Cdd:PRK10263  625 IKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVpvnaedadaaaeaeLARQFA 704

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  443 ASGSQAYgmNAQTPLSpapmytmfANPSSSSGAPFFVYAA----PPGSPMATPdwaSVTPQQGTPMHFVIPAQFVAGAFP 518
Cdd:PRK10263  705 QTQQQRY--SGEQPAG--------ANPFSLDDFEFSPMKAllddGPHEPLFTP---IVEPVQQPQQPVAPQQQYQQPQQP 771

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  519 MTSPG-----NGSAPPSQGF--PWNPFSPGP---------APTWNAPGPSKPSPSDDPSSQPEPSTKAEPE--------I 574
Cdd:PRK10263  772 VAPQPqyqqpQQPVAPQPQYqqPQQPVAPQPqyqqpqqpvAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQdtllhpllM 851

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 380092654  575 TTKDTKPTpvvsvyDVNTTPSPPSRSSTVPTSKSDPSDNEGL 616
Cdd:PRK10263  852 RNGDSRPL------HKPTTPLPSLDLLTPPPSEVEPVDTFAL 887
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 522-621 8.66e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 46.06  E-value: 8.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  522 PGNGSAPPSQG---FPWNPFSPGPAPTWNAPGPSKPSPS--DDPSSQPEPS----TKAEPEITTKDTKPTPVVsvydvnT 592
Cdd:pfam05109 455 PTNLTAPASTGptvSTADVTSPTPAGTTSGASPVTPSPSprDNGTESKAPDmtspTSAVTTPTPNATSPTPAV------T 528

                          90       100       110
                  ....*....|....*....|....*....|...
gi 380092654  593 TPSP----PSRSSTVPTSKSDPSDNEGLTPHPA 621
Cdd:pfam05109 529 TPTPnatsPTLGKTSPTSAVTTPTPNATSPTPA 561
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 454-582 1.04e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.85  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  454 QTP---LSPAP-MYT---MFANPSSSSGAPFfVYAAPPGSPMATPDWASVTPQQGTPMHFVIPAQFVAGAFPMTSPGNGS 526
Cdd:PRK10263  367 QTGepvIAPAPeGYPqqsQYAQPAVQYNEPL-QQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGN 445

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 380092654  527 A--PPSQGFPWNPfSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPT 582
Cdd:PRK10263  446 AwqAEEQQSTFAP-QSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPA 502
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 378-607 1.62e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 44.56  E-value: 1.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 378 QMLSEAITIRKLKNNQREelQDVRQEFEDQLEEARASSIKVQESGLGNGKRPEVHEKEAFSRQFEASGSQAYGMNAQTPL 457
Cdd:PTZ00436 153 RQLAEQLAAKRLKDEQHR--HKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPA 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 458 SPAPMYTMFANPSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTpmhfvipaqfvagafpmTSPGNGSAPPSQGFPwNP 537
Cdd:PTZ00436 231 KAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA-----------------APPAKAAAPPAKAAA-PP 292

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 538 FSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPeiTTKDTKPTPVVsvydvnttpSPPSRSSTVPTSK 607
Cdd:PTZ00436 293 AKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPP--AKAATPPAKAA---------APPAKAAAAPVGK 351
PHA03247 PHA03247
large tegument protein UL36; Provisional
 443-616 1.85e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  443 ASGSQAYGMNAQTPLSP-APMYTMFANPSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTPMHFVIPAQFVAGAFPMTS 521
Cdd:PHA03247 2811 VLAPAAALPPAASPAGPlPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPA 2890

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  522 PgngsAPPSQGFPWNPFSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPE---------ITTKDTKPTPVVSV----- 587
Cdd:PHA03247 2891 V----SRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRpqpplapttDPAGAGEPSGAVPQpwlga 2966

                         170       180       190
                  ....*....|....*....|....*....|....
gi 380092654  588 -----YDVNTTPSPPSRSStVPTSKSDPSDNEGL 616
Cdd:PHA03247 2967 lvpgrVAVPRFRVPQPAPS-REAPASSTPPLTGH 2999
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 458-619 2.16e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.52  E-value: 2.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  458 SPAPMYTmfaNPSSSSGAPFFVYAAP-PGSPMATPDWASVTPQQGTPMHFVI-PAQFVAGAFP-MTSPGNGSAPPSQGfP 534
Cdd:pfam05109 501 SKAPDMT---SPTSAVTTPTPNATSPtPAVTTPTPNATSPTLGKTSPTSAVTtPTPNATSPTPaVTTPTPNATIPTLG-K 576

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  535 WNPFSPGPAPTWNAPGPS--KPSPSDDPSSQPEPSTKAEPEITTKDTKPTPVVSVYDVNTTPSPPSRSSTVPTSKSD--- 609
Cdd:pfam05109 577 TSPTSAVTTPTPNATSPTvgETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISEtls 656

                         170
                  ....*....|
gi 380092654  610 PSDNEGLTPH 619
Cdd:pfam05109 657 PSTSDNSTSH 666
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
481-621 2.84e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 2.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 481 AAPPGSPMATPDWASVTPQQG---TPMHFVIPAQFVAGAFPMTSPGNGSAPPSQGfpwnpfSPGPAP-TWNAPGPSKPSP 556
Cdd:PRK12323 400 AAPPAAPAAAPAAAAAARAVAaapARRSPAPEALAAARQASARGPGGAPAPAPAP------AAAPAAaARPAAAGPRPVA 473

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 380092654 557 SDDPSSQPEPSTKAEPEITTKDTKP-------TPVVSVYDVNTTPSPPSRSSTVPTSKSDPSDN-EGLTPHPA 621
Cdd:PRK12323 474 AAAAAAPARAAPAAAPAPADDDPPPweelppeFASPAPAQPDAAPAGWVAESIPDPATADPDDAfETLAPAPA 546
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 410-578 3.28e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 3.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 410 EARASSIKVQESGLGNGKRPEVHEKEAFSRQFEASGSQAYGMNAQTPLSPAPMYTMFANPSSSSGAPFFVYAAPPGSPMA 489
Cdd:PRK07764 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPA 711

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 490 TPDWASVTPQQGtpmhfvipaqfVAGAFPMTSPGNGSAPPSQGFPWNPFSPGPAPtWNAPGPSKPSPSDDPSSQPEPSTK 569
Cdd:PRK07764 712 GQADDPAAQPPQ-----------AAQGASAPSPAADDPVPLPPEPDDPPDPAGAP-AQPPPPPAPAPAAAPAAAPPPSPP 779


                 ....*....
gi 380092654 570 AEPEITTKD 578
Cdd:PRK07764 780 SEEEEMAED 788
PHA03247 PHA03247
large tegument protein UL36; Provisional
 438-611 4.21e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 4.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  438 SRQFEASGSQAYGMNAQTPLSPAPM--YTMFANPSSSSGAPffvYAAPPGSPMATPdwASVTPQQGTPMHFVIPAQFVAG 515
Cdd:PHA03247 2668 RRLGRAAQASSPPQRPRRRAARPTVgsLTSLADPPPPPPTP---EPAPHALVSATP--LPPGPAAARQASPALPAAPAPP 2742

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  516 AFPMT--SPGNGSAPPSQGFPWNPFSPGP------APTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPTPVVSV 587
Cdd:PHA03247 2743 AVPAGpaTPGGPARPARPPTTAGPPAPAPpaapaaGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822

                         170       180
                  ....*....|....*....|....
gi 380092654  588 YDVNTTPSPPSRSSTVPTSKSDPS 611
Cdd:PHA03247 2823 SPAGPLPPPTSAQPTAPPPPPGPP 2846
PHA03247 PHA03247
large tegument protein UL36; Provisional
 453-624 4.54e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 4.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  453 AQTPLSPApmytMFANPSSSSGAPFFVYAAPPGS---PMATPDWASVTPQQGTPMHFVIPAQFVAGAFPM---TSPGNGS 526
Cdd:PHA03247 2787 AVASLSES----RESLPSPWDPADPPAAVLAPAAalpPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLggsVAPGGDV 2862

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  527 A--PPSQGFPWNPFSPG-------PAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPeiTTKDTKPTPVVSvydvNTTPSPP 597
Cdd:PHA03247 2863 RrrPPSRSPAAKPAAPArppvrrlARPAVSRSTESFALPPDQPERPPQPQAPPPP--QPQPQPPPPPQP----QPPPPPP 2936

                         170       180
                  ....*....|....*....|....*..
gi 380092654  598 SRSSTVPTSKSDPSDNEGLTPHPANLR 624
Cdd:PHA03247 2937 PRPQPPLAPTTDPAGAGEPSGAVPQPW 2963
PHA03378 PHA03378
EBNA-3B; Provisional
 467-645 5.80e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 43.52  E-value: 5.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 467 ANPSSSSGAPFFVYAAPPGS---PMATPDWASvtPQQGTPMHfVIPAQFVAGAFPMTSPGNGSAPPSQGFPWNPFSPGPA 543
Cdd:PHA03378 674 YQPSPTGANTMLPIQWAPGTmqpPPRAPTPMR--PPAAPPGR-AQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAA 750

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 544 PTWNAPGPSKPSPSDDPSSQPEPSTKAEPeittKDTKPTPVVSVyDVNTTPSPPSRSSTVPTSKSDPSDNEGLTPHPANL 623
Cdd:PHA03378 751 PGRARPPAAAPGRARPPAAAPGAPTPQPP----PQAPPAPQQRP-RGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQIL 825

                        170       180
                 ....*....|....*....|..
gi 380092654 624 RRADTDLTLIGQPSSNLDAGGQ 645
Cdd:PHA03378 826 RQLLTGGVKRGRPSLKKPAALE 847
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 455-653 6.30e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 6.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  455 TPLSPAPMYTMFANPSSSSGAPFFVYAAPPGSPMATP-----DWASVTPQQGTPMHFVIPAQFVAGAFPMTSPGNGSAP- 528
Cdd:PHA03307  188 SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPgrsaaDDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPt 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  529 -PSQGFPWNPFSPGPAPTWNAPGPSKPSPSDDPS--------SQPEPSTKAEPEITTKDTKPTPV-VSVYDVNTTPSPPS 598
Cdd:PHA03307  268 rIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSspgsgpapSSPRASSSSSSSRESSSSSTSSSsESSRGAAVSPGPSP 347

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 380092654  599 RSSTVPTSKSDPSD----NEGLTPHPANLRRADTDLTLIGQPSSNLDAGGQTGRQTSGQ 653
Cdd:PHA03307  348 SRSPSPSRPPPPADpsspRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGR 406
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 404-636 6.54e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.99  E-value: 6.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 404 FEDQLEEARASSIKVQESGLGNGKRP---EVHEKEAFSRQFEASGSQAYGMnAQTPLSPAPMYTMFANPSS------SSG 474
Cdd:PLN03209 316 MEELLAKIPSQRVPPKESDAADGPKPvptKPVTPEAPSPPIEEEPPQPKAV-VPRPLSPYTAYEDLKPPTSpiptppSSS 394

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 475 APffvyAAPPGSPMATPDWASVTPQQGTPMHfvipaqfVAGAFPMTSPGNGSAPPSqgfPWN-------PFSPGP-APTW 546
Cdd:PLN03209 395 PA----SSKSVDAVAKPAEPDVVPSPGSASN-------VPEVEPAQVEAKKTRPLS---PYAryedlkpPTSPSPtAPTG 460

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 547 NAPGPSKPS--PSDDPSSQPEPSTKAEPEITTKDTKPTPvVSVYDVNTTPSPPSRSSTVPtSKSDPSDNEGLTPHPANLR 624
Cdd:PLN03209 461 VSPSVSSTSsvPAVPDTAPATAATDAAAPPPANMRPLSP-YAVYDDLKPPTSPSPAAPVG-KVAPSSTNEVVKVGNSAPP 538

                        250
                 ....*....|..
gi 380092654 625 RADTDLTLIGQP 636
Cdd:PLN03209 539 TALADEQHHAQP 550
PHA03247 PHA03247
large tegument protein UL36; Provisional
 460-626 7.17e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 7.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  460 APMYTMFAN---PSSSSGAPFFVYAAPPgSPMATPDWASVTPQ------QGTPMHFVIPAqFVAGAFPMTSPGNGSAPPs 530
Cdd:PHA03247 2477 APVYRRPAEarfPFAAGAAPDPGGGGPP-DPDAPPAPSRLAPAilpdepVGEPVHPRMLT-WIRGLEELASDDAGDPPP- 2553

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  531 qgfPWNPFSPGPAPTWNAPgPSKPSP----------SDDPSSQPEPSTKAEPEITTKDTKPTPVVSVYDVNTTPSPPSRS 600
Cdd:PHA03247 2554 ---PLPPAAPPAAPDRSVP-PPRPAPrpsepavtsrARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629

                         170       180
                  ....*....|....*....|....*.
gi 380092654  601 STVPTSKSDPSDNEGLTPHPANLRRA 626
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVPPPERPRDD 2655
PHA03247 PHA03247
large tegument protein UL36; Provisional
 453-620 9.73e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 9.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  453 AQTPLSPAPMYT--MFANPSSSSGAPFFVYAAPPGSPMATPDwASVTPQQGTPmhfviPAQFVAGAFPmtSPGNGSAPPS 530
Cdd:PHA03247 2899 ALPPDQPERPPQpqAPPPPQPQPQPPPPPQPQPPPPPPPRPQ-PPLAPTTDPA-----GAGEPSGAVP--QPWLGALVPG 2970

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  531 QGFPWNPFSPGPAPTWNAPGPSKPSPSDdpSSQPEPSTKAEPEITTKDTKPTPvVSVYDVNTTPSPPSRSSTVPTSKSDP 610
Cdd:PHA03247 2971 RVAVPRFRVPQPAPSREAPASSTPPLTG--HSLSRVSSWASSLALHEETDPPP-VSLKQTLWPPDDTEDSDADSLFDSDS 3047

                         170
                  ....*....|..
gi 380092654  611 --SDNEGLTPHP 620
Cdd:PHA03247 3048 erSDLEALDPLP 3059
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 489-593 1.04e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 41.86  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 489 ATPDWAsvtPQQGtPMHFVIPAQFVAGAFPMTSPGNGSAPPSQGFPWNPFSPGPAPTWNAPGPSKpspSDDPSSQPEPST 568
Cdd:PHA03291 189 ALPLSA---PRLG-PADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGT---TPEAEGTPAPPT 261

                         90       100
                 ....*....|....*....|....*
gi 380092654 569 KAEPEITTKDTKPTPVVSVYDVNTT 593
Cdd:PHA03291 262 PGGGEAPPANATPAPEASRYELTVT 286
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 426-598 1.82e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 41.45  E-value: 1.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 426 GKRPEVHEKEAFSRQFEASGSQAYGMNAQTPLS-PAPMYTMFANPSSssgaPFFVYA--APPGSPMATPDWASVTPQQGT 502
Cdd:PLN03209 393 SSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVePAQVEAKKTRPLS----PYARYEdlKPPTSPSPTAPTGVSPSVSST 468

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 503 PmhfVIPAqfVAGAFPMTSPGNGSAPPSQGFpwNPFSPGPAPTWNAPgPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPT 582
Cdd:PLN03209 469 S---SVPA--VPDTAPATAATDAAAPPPANM--RPLSPYAVYDDLKP-PTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTA 540

                        170
                 ....*....|....*.
gi 380092654 583 PVVSVYDVNTTPSPPS 598
Cdd:PLN03209 541 LADEQHHAQPKPRPLS 556
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 456-655 1.93e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  456 PLSPAPMYTMFANPSSSSGAPffvyAAPPGSPMATPDWASVTPQQGTPmhfvIPAqfVAGAFPMTSPGNGSAPPSQGfPW 535
Cdd:PHA03307  142 GSPGPPPAASPPAAGASPAAV----ASDAASSRQAALPLSSPEETARA----PSS--PPAEPPPSTPPAAASPRPPR-RS 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  536 NPFS-----PGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAePEITTKDTKPTPVV-------SVYDVNTTPSPPSRSSTV 603
Cdd:PHA03307  211 SPISasassPAPAPGRSAADDAGASSSDSSSSESSGCGWG-PENECPLPRPAPITlptriweASGWNGPSSRPGPASSSS 289

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 380092654  604 PTSKSDPSDNEGLTPHPANLRRADTDLTLIGQPSSNLDAGGQTGRQTSGQGF 655
Cdd:PHA03307  290 SPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAV 341
PHA03247 PHA03247
large tegument protein UL36; Provisional
 455-691 2.03e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 2.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  455 TPLSPAPMYtmfANPSSSSGAPFFVYAAP-PGSPMATPdwASVTPQQGTPMHFVIPAQFVAGAFPMTSPgngSAPPSQGF 533
Cdd:PHA03247  276 TGPPPPPEA---AAPNGAAAPPDGVWGAAlAGAPLALP--APPDPPPPAPAGDAEEEDDEDGAMEVVSP---LPRPRQHY 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  534 PWNpFSPGPAPTWnapgpSKPSPSDDPSSQPEPSTKAEPEITTKDTKP---TPVVSVYDVNTTPSPpsrSSTVPTSKSDP 610
Cdd:PHA03247  348 PLG-FPKRRRPTW-----TPPSSLEDLSAGRHHPKRASLPTRKRRSARhaaTPFARGPGGDDQTRP---AAPVPASVPTP 418

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  611 sdneGLTPHPANLRRADTDLTLIGQPSSNldaggqtgrqtsgqgfEGVAADPNTLSYFPAVAIAEASVEEEGQEA----- 685
Cdd:PHA03247  419 ----APTPVPASAPPPPATPLPSAEPGSD----------------DGPAPPPERQPPAPATEPAPDDPDDATRKAldalr 478


                  ....*.
gi 380092654  686 ERRTGE 691
Cdd:PHA03247  479 ERRPPE 484
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 513-687 2.37e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 2.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 513 VAGAFPMTSPGNGSAPPSQGFPWNPFSPGPAPTWNAPGPSK----PSPSDDPSSQPEPSTKAEPEITTKDTKPTPVVSVY 588
Cdd:PRK07764 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPApagaAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD 667

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 589 D--VNTTPSPPSRSSTVPTSKSDPSDNEGLTPHPANlRRADTDLTLIGQPSSNLDAGGQTGRQTSGQGFEGVAADPNTLS 666
Cdd:PRK07764 668 GwpAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP-APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746

                        170       180
                 ....*....|....*....|.
gi 380092654 667 YFPAVAIAEASVEEEGQEAER 687
Cdd:PRK07764 747 DPPDPAGAPAQPPPPPAPAPA 767
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 453-601 2.72e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 2.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 453 AQTPLSPAPMYTMFANPSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTPMHfviPAQFVAGAFPMTSPGNGSAPPSQG 532
Cdd:PRK07764 628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA---PPPAPAPAAPAAPAGAAPAQPAPA 704

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 380092654 533 FPWNPFSPGPAPTWNAP-------GPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPTPVVSVYDVNTTPSPPSRSS 601
Cdd:PRK07764 705 PAATPPAGQADDPAAQPpqaaqgaSAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 469-583 3.28e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 3.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 469 PSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTPMhfvIPAQFVAGAFPMTSPGNGSAPPSQGFPWNPFSPGPAPTwNA 548
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAP---APAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA-AA 441

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 380092654 549 PGPSKPSPSDDPSSQPEPST---KAEPEITTKDTKPTP 583
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAipvRVAPEPAVASAAPAP 479
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 496-597 4.00e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.56  E-value: 4.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 496 VTPQQGTPMHF-VIPAQFVAGAFPMTSPGNGSAP-PSQGFPWNPFSPGPAPTWNAPG-------PSKPSPSDDPSSQPEP 566
Cdd:PRK14950 343 TTSYGQLPLELaVIEALLVPVPAPQPAKPTAAAPsPVRPTPAPSTRPKAAAAANIPPkepvretATPPPVPPRPVAPPVP 422

                         90       100       110
                 ....*....|....*....|....*....|.
gi 380092654 567 STKAEPEITTKDTKPTPVVSVYDvntTPSPP 597
Cdd:PRK14950 423 HTPESAPKLTRAAIPVDEKPKYT---PPAPP 450
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 469-574 4.21e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 4.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 469 PSSSSGAPFFVYAAPPGSPMATPDWASVTPQQGTPMhfviPAQFVAGAFPMTSPGNGSAPPSQGFPWNPFSPGPAPTWNA 548
Cdd:PRK07764 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA----PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476

                         90       100
                 ....*....|....*....|....*.
gi 380092654 549 PGPSKPSPSDDPSSQPEPSTKAEPEI 574
Cdd:PRK07764 477 TAAPAPAPPAAPAPAAAPAAPAAPAA 502
PHA03247 PHA03247
large tegument protein UL36; Provisional
 453-700 5.34e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 5.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  453 AQTPLSPAPMYTMFANPSSSSGAP----FFVYAAPPGSPMATPDWASVTPQQGTPMHFVIPAQFVAGAFPMTSPGNGSAP 528
Cdd:PHA03247 2610 GPAPPSPLPPDTHAPDPPPPSPSPaanePDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  529 PSQGFPWNPFSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEIT-TKDTKPTPVVSVYDVNTTPSPPSRSSTVPTSK 607
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPaAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  608 SDPSDNEGlTPHPANLRRADTDL--TLIGQPSSNlDAGGQTGRQTSGQGFEGVAADPNTLSYFPAVAIAEASVEEEGQEA 685
Cdd:PHA03247 2770 APPAAPAA-GPPRRLTRPAVASLseSRESLPSPW-DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847

                         250
                  ....*....|....*
gi 380092654  686 ERRTGEGDNAGGTGF 700
Cdd:PHA03247 2848 PSLPLGGSVAPGGDV 2862
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 509-646 7.27e-03

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 39.38  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654  509 PAQFVAGAFPMTSPGNGSAPPSQGFPWNPfsPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKDTKPtpvvsvy 588
Cdd:pfam13254 199 SFKEVTPVGLMRSPAPGGHSKSPSVSGIS--ADSSPTKEEPSEEADTLSTDKEQSPAPTSASEPPPKTKELPK------- 269

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 380092654  589 dVNTTPSPPSRSSTVPTSKSDPSDNEglTPHPANLRRADTDLTLIGQPSSNLDAGGQT 646
Cdd:pfam13254 270 -DSEEPAAPSKSAEASTEKKEPDTES--SPETSSEKSAPSLLSPVSKASIDKPLSSPD 324
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 509-615 8.06e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.45  E-value: 8.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380092654 509 PAQFVAGAFPMTSPGNGSAPPSQGfPWNPFSPGPAPTWNAPGPSKPSPSDDPSSQPEPSTKAEPEITTKdtkpTPVVSVY 588
Cdd:COG3266  258 PSQASSASAPATTSLGEQQEVSLP-PAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAA----KPVVTET 332

                         90       100       110
                 ....*....|....*....|....*....|.
gi 380092654 589 DVNTTPSPPSRSS----TVPTSKSDPSDNEG 615
Cdd:COG3266  333 AAPAAPAPEAAAAaaapAAPAVAKKLAADEQ 363
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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