|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-85 |
4.25e-58 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 181.13 E-value: 4.25e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00156 68 LLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLG 147
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00156 148 TDLVQ 152
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-85 |
8.15e-34 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 119.12 E-value: 8.15e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:COG1290 87 LIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPV 166
|
....*..
gi 37731361 79 LGTDLVQ 85
Cdd:COG1290 167 IGTWLVT 173
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-84 |
1.07e-32 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 111.69 E-value: 1.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:cd00284 70 LIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPV 149
|
....*.
gi 37731361 79 LGTDLV 84
Cdd:cd00284 150 IGITLV 155
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-85 |
2.57e-30 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 105.54 E-value: 2.57e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:pfam00033 61 LIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPV 140
|
....*..
gi 37731361 79 LGTDLVQ 85
Cdd:pfam00033 141 IGDTLVE 147
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-85 |
4.25e-58 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 181.13 E-value: 4.25e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00156 68 LLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLG 147
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00156 148 TDLVQ 152
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-85 |
4.75e-54 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 171.36 E-value: 4.75e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00100 78 IIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 157
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00100 158 TTLVE 162
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-85 |
5.53e-54 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 171.24 E-value: 5.53e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00119 79 LIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG 158
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00119 159 QTLVE 163
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-85 |
3.06e-52 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 166.78 E-value: 3.06e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00074 79 LMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMG 158
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00074 159 DTLVQ 163
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-84 |
2.26e-51 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 164.69 E-value: 2.26e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00145 79 LLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVG 158
|
....
gi 37731361 81 TDLV 84
Cdd:MTH00145 159 KMLV 162
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-85 |
2.53e-51 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 163.93 E-value: 2.53e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00191 75 LLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIG 154
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00191 155 DDLVQ 159
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-85 |
2.68e-50 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 161.74 E-value: 2.68e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00131 78 LIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVG 157
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00131 158 NTLVQ 162
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-85 |
3.89e-48 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 155.99 E-value: 3.89e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00016 79 LLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIG 158
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00016 159 KMLVQ 163
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-85 |
4.15e-45 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 148.32 E-value: 4.15e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00034 78 LLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIG 157
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00034 158 TDIVQ 162
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-85 |
1.11e-42 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 142.15 E-value: 1.11e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00022 77 LLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVG 156
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00022 157 TDIVQ 161
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-85 |
5.01e-40 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 135.05 E-value: 5.01e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00224 79 LLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIG 158
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00224 159 KDLVE 163
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-85 |
4.01e-38 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 130.21 E-value: 4.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00053 79 ILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVG 158
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00053 159 DDIVR 163
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-85 |
8.15e-34 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 119.12 E-value: 8.15e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:COG1290 87 LIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPV 166
|
....*..
gi 37731361 79 LGTDLVQ 85
Cdd:COG1290 167 IGTWLVT 173
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-84 |
1.07e-32 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 111.69 E-value: 1.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:cd00284 70 LIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPV 149
|
....*.
gi 37731361 79 LGTDLV 84
Cdd:cd00284 150 IGITLV 155
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-85 |
2.57e-30 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 105.54 E-value: 2.57e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:pfam00033 61 LIRSVHANGASMFFLMLYLHIFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPV 140
|
....*..
gi 37731361 79 LGTDLVQ 85
Cdd:pfam00033 141 IGDTLVE 147
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-85 |
5.75e-30 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 108.87 E-value: 5.75e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00033 75 ILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVG 154
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00033 155 GSIVE 159
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-85 |
1.04e-29 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 107.33 E-value: 1.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00086 67 LFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWG 146
|
....*
gi 37731361 81 TDLVQ 85
Cdd:MTH00086 147 PSIVM 151
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-83 |
2.95e-20 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 82.34 E-value: 2.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTHTWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLG 80
Cdd:MTH00046 69 CVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVG 148
|
...
gi 37731361 81 TDL 83
Cdd:MTH00046 149 SLV 151
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
11-85 |
5.03e-20 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 78.44 E-value: 5.03e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37731361 11 SMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 85
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVW 77
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-85 |
2.83e-12 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 59.34 E-value: 2.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:PRK03735 89 IVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPV 168
|
....*..
gi 37731361 79 LGTDLVQ 85
Cdd:PRK03735 169 IGDFIKT 175
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-85 |
2.19e-08 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 48.56 E-value: 2.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37731361 1 IIRTLHANGASMFFICIYLHVGRGIYYGSYMYTH--TWMIGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPY 78
Cdd:CHL00070 81 LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPV 160
|
....*..
gi 37731361 79 LGTDLVQ 85
Cdd:CHL00070 161 IGSPLVE 167
|
|
|