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Conserved domains on  [gi|37722701|gb|AAN86387|]
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cytochrome b, partial (mitochondrion) [Gallotia galloti eisentrauti]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-132 4.87e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 270.62  E-value: 4.87e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    1 NLRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNI 80
Cdd:MTH00119   4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 37722701   81 HANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00119  84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-132 4.87e-92

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 270.62  E-value: 4.87e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    1 NLRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNI 80
Cdd:MTH00119   4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 37722701   81 HANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00119  84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-132 1.79e-51

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 161.77  E-value: 1.79e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701   7 PIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGAS 86
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 37722701  87 LFFICIYMHIGRGLYYGSYLFT--ETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-132 3.58e-47

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 150.22  E-value: 3.58e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    16 FIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 37722701    96 IGRGLYYG--SYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-132 2.16e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.48  E-value: 2.16e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701  16 FIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMH 95
Cdd:COG1290  27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 37722701  96 IGRGLYYGSY-----LfteTWNIGVLLLLLVMATAFMGYVLP 132
Cdd:COG1290 107 MFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLP 145
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-132 4.87e-92

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 270.62  E-value: 4.87e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    1 NLRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNI 80
Cdd:MTH00119   4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 37722701   81 HANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00119  84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00131
cytochrome b; Provisional
 1-132 1.12e-87

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 259.58  E-value: 1.12e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    1 NLRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNI 80
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 37722701   81 HANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00100
cytochrome b; Provisional
 1-132 1.66e-87

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 259.19  E-value: 1.66e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    1 NLRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNI 80
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 37722701   81 HANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00074
cytochrome b; Provisional
 1-132 8.78e-87

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 257.30  E-value: 8.78e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    1 NLRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNI 80
Cdd:MTH00074   4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 37722701   81 HANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00074  84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00191
cytochrome b; Provisional
 2-132 2.30e-84

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 250.60  E-value: 2.30e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    2 LRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 81
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 37722701   82 ANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131
CYTB MTH00145
cytochrome b; Provisional
 2-132 4.12e-79

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 237.88  E-value: 4.12e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    2 LRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 81
Cdd:MTH00145   5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 37722701   82 ANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00156
cytochrome b; Provisional
 9-132 4.29e-79

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 236.99  E-value: 4.29e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    9 IKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLF 88
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 37722701   89 FICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00034
cytochrome b; Validated
 2-132 1.59e-78

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 236.14  E-value: 1.59e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    2 LRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 81
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 37722701   82 ANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00016
cytochrome b; Validated
 2-132 8.26e-75

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 226.87  E-value: 8.26e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    2 LRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 81
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 37722701   82 ANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 2-132 4.98e-66

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 204.38  E-value: 4.98e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    2 LRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 81
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 37722701   82 ANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 2-132 3.03e-63

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 197.23  E-value: 3.03e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    2 LRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 81
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 37722701   82 ANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 2-132 3.59e-60

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 189.53  E-value: 3.59e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    2 LRKQHPIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIH 81
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 37722701   82 ANGASLFFICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-132 1.79e-51

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 161.77  E-value: 1.79e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701   7 PIIKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGAS 86
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 37722701  87 LFFICIYMHIGRGLYYGSYLFT--ETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-132 3.58e-47

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 150.22  E-value: 3.58e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    16 FIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 37722701    96 IGRGLYYG--SYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
CYTB MTH00033
cytochrome b; Provisional
 14-132 1.03e-46

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 154.71  E-value: 1.03e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701   14 SSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIY 93
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 37722701   94 MHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-132 2.16e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.48  E-value: 2.16e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701  16 FIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMH 95
Cdd:COG1290  27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 37722701  96 IGRGLYYGSY-----LfteTWNIGVLLLLLVMATAFMGYVLP 132
Cdd:COG1290 107 MFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLP 145
CYTB MTH00086
cytochrome b; Provisional
 10-132 2.68e-40

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 137.38  E-value: 2.68e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701   10 KIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFF 89
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 37722701   90 ICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 9-132 1.18e-27

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 104.29  E-value: 1.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701    9 IKIINSSFIDLPTPPNISAWWNFGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLF 88
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 37722701   89 FICIYMHIGRGLYYGSYLFTETWNIGVLLLLLVMATAFMGYVLP 132
Cdd:MTH00046  82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
PRK03735 PRK03735
cytochrome b6; Provisional
 31-132 7.49e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 83.61  E-value: 7.49e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37722701   31 FGSLLGLCLIIQIITGLFLAMHYNADINSAFSSIAHIHRDVQHGWLIRNIHANGASLFFICIYMHIGRGLYYGSYLFTE- 109
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....
gi 37722701  110 -TWNIGVLLLLLVMATAFMGYVLP 132
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLP 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-132 1.19e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 55.71  E-value: 1.19e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 37722701    86 SLFFICIYMHIGRGLYYGSYLFTE--TWNIGVLLLLLVMATAFMGYVLP 132
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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