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Conserved domains on  [gi|37596451|gb|AAQ94986|]
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NADH dehydrogenase subunit 6, partial (mitochondrion) [Pytilia afra]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
1-159 1.81e-35

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 121.01  E-value: 1.81e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    1 MMEFVLFLGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451   81 SWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLADGG--TVDSGGLLSVRLDFGGAAVLYSQGVGLLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLWGMEGVGvvTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                 .
gi 37596451  159 E 159
Cdd:MTH00115 161 E 161
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
1-159 1.81e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 121.01  E-value: 1.81e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    1 MMEFVLFLGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451   81 SWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLADGG--TVDSGGLLSVRLDFGGAAVLYSQGVGLLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLWGMEGVGvvTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                 .
gi 37596451  159 E 159
Cdd:MTH00115 161 E 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-126 1.65e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 52.89  E-value: 1.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    17 LGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPESWVDWGVVGYGFGMGL 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 37596451    97 VVVVGLAIAGVFGVLADGGTVDSGGLLSVR 126
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIE 110
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
1-159 1.81e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 121.01  E-value: 1.81e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    1 MMEFVLFLGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451   81 SWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLADGG--TVDSGGLLSVRLDFGGAAVLYSQGVGLLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLWGMEGVGvvTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                 .
gi 37596451  159 E 159
Cdd:MTH00115 161 E 161
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
1-159 6.66e-33

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 114.47  E-value: 6.66e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    1 MMEFVLFLGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451   81 SWVDWGVVGYGFG-MGLVVVVGLAIAGVFGVLADGGTVDSGGLLSVRLDFGGAAVLYSQGVGLLLIGGWGLLLTLFVVLE 159
Cdd:MTH00138  81 SWGSWSVLGYVVGyLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
1-159 3.44e-32

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 112.63  E-value: 3.44e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    1 MMEFVLFLGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37596451   81 SWVDWGVVGYGFGMGLVVVVGLAIAGVFGVLADGGTVDSGGLLSVRLDFGGAAVLYSQGVGLLLIGGWGLLLTLFVVLE 159
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLLLIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLE 159
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
1-137 3.07e-19

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 79.46  E-value: 3.07e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    1 MMEFVLFLGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37596451   81 SWVDWGVVGYGFGMGLVVVVGLA----------IAGVFGVLADGGTVDSGGLLSVRLDFGGAAVLYS 137
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVlyvlkddeveVVFNFNGLGDWVIYDTGGSGFFSEDAMGVAALYS 148
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
1-159 1.56e-16

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 72.33  E-value: 1.56e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    1 MMEFVLFLGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37596451   81 SWVDWGVVGYgfgmGLVVVVGLAIAGVFGVLADGGTVDSGGLLSVRLDFGGAAVLYSQGVGLLLIGGWGLLLTLFVVLE 159
Cdd:MTH00214  81 SWGGWSVLLF----FLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLE 155
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
2-79 2.77e-12

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 60.69  E-value: 2.77e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37596451    2 MEFVLFLgLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYP 79
Cdd:MTH00045   1 MVFYLFL-ILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYP 77
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-126 1.65e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 52.89  E-value: 1.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37596451    17 LGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPESWVDWGVVGYGFGMGL 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 37596451    97 VVVVGLAIAGVFGVLADGGTVDSGGLLSVR 126
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIE 110
ND6 MTH00021
NADH dehydrogenase subunit 6; Validated
7-73 1.49e-04

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 214401 [Multi-domain]  Cd Length: 188  Bit Score: 40.10  E-value: 1.49e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37596451    7 FLGLCFILGGLGVASNPSPYYGVMGLVVAAIAGCGWLVSLGVSFVSLVLVMVYLGGMLVVFVYSVSL 73
Cdd:MTH00021   1 FFSLGIIGSGIMVISALNPVHSIFWLVVVFVNSAVFFILLGLDFLALMFLIIYVGAIAILFLFVIML 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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