![](files/infoQ.gif)
DNA repair protein RadA, partial [Aeromonas taiwanensis]
DNA repair protein RadA family protein( domain architecture ID 1008227)
DNA repair protein RadA family protein is an AAA+ ATPase that may be responsible for the stabilization or processing of branched DNA molecules
List of domain hits
![](files/help.png)
Name | Accession | Description | Interval | E-value | |||
Sms super family | cl34087 | DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
1-135 | 4.17e-66 | |||
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair]; The actual alignment was detected with superfamily member COG1066: Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 206.82 E-value: 4.17e-66
|
|||||||
Name | Accession | Description | Interval | E-value | |||
Sms | COG1066 | DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
1-135 | 4.17e-66 | |||
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair]; Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 206.82 E-value: 4.17e-66
|
|||||||
RadA_SMS_N | cd01121 | bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
1-135 | 1.74e-60 | |||
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules. Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 186.97 E-value: 1.74e-60
|
|||||||
PRK09302 | PRK09302 | circadian clock protein KaiC; Reviewed |
50-120 | 4.93e-10 | |||
circadian clock protein KaiC; Reviewed Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 56.04 E-value: 4.93e-10
|
|||||||
ATPase | pfam06745 | KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
52-126 | 8.91e-09 | |||
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria. Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 51.86 E-value: 8.91e-09
|
|||||||
circ_KaiC | TIGR02655 | circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, ... |
50-125 | 1.03e-04 | |||
circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. [Cellular processes, Other] Pssm-ID: 131703 [Multi-domain] Cd Length: 484 Bit Score: 40.70 E-value: 1.03e-04
|
|||||||
AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
68-135 | 9.20e-03 | |||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 34.27 E-value: 9.20e-03
|
|||||||
Name | Accession | Description | Interval | E-value | |||
Sms | COG1066 | DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
1-135 | 4.17e-66 | |||
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair]; Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 206.82 E-value: 4.17e-66
|
|||||||
RadA_SMS_N | cd01121 | bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
1-135 | 1.74e-60 | |||
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules. Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 186.97 E-value: 1.74e-60
|
|||||||
RAD55 | COG0467 | RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
50-125 | 2.12e-19 | |||
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 79.96 E-value: 2.12e-19
|
|||||||
KaiC-like | cd01124 | Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
52-120 | 1.24e-10 | |||
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation. Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 56.50 E-value: 1.24e-10
|
|||||||
KaiC-like_N | cd19488 | N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
52-128 | 2.03e-10 | |||
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation. Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 56.20 E-value: 2.03e-10
|
|||||||
PRK09302 | PRK09302 | circadian clock protein KaiC; Reviewed |
50-120 | 4.93e-10 | |||
circadian clock protein KaiC; Reviewed Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 56.04 E-value: 4.93e-10
|
|||||||
KaiC-like_C | cd19487 | C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
52-135 | 2.04e-09 | |||
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation. Pssm-ID: 410895 [Multi-domain] Cd Length: 219 Bit Score: 53.46 E-value: 2.04e-09
|
|||||||
DnaB_C | cd00984 | C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase ... |
52-126 | 6.25e-09 | |||
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. Pssm-ID: 410864 [Multi-domain] Cd Length: 256 Bit Score: 52.13 E-value: 6.25e-09
|
|||||||
ATPase | pfam06745 | KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
52-126 | 8.91e-09 | |||
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria. Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 51.86 E-value: 8.91e-09
|
|||||||
FlaH | COG2874 | Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
50-105 | 1.27e-07 | |||
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; Pssm-ID: 442121 Cd Length: 230 Bit Score: 48.29 E-value: 1.27e-07
|
|||||||
archRadB | cd01394 | archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
52-112 | 3.89e-07 | |||
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear. Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 46.92 E-value: 3.89e-07
|
|||||||
DnaB_C | pfam03796 | DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
52-126 | 4.87e-07 | |||
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. Pssm-ID: 427509 [Multi-domain] Cd Length: 254 Bit Score: 47.03 E-value: 4.87e-07
|
|||||||
KaiC_C | cd19484 | C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
52-120 | 7.01e-07 | |||
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation. Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 46.17 E-value: 7.01e-07
|
|||||||
DnaB | COG0305 | Replicative DNA helicase [Replication, recombination and repair]; |
47-126 | 8.45e-07 | |||
Replicative DNA helicase [Replication, recombination and repair]; Pssm-ID: 440074 [Multi-domain] Cd Length: 429 Bit Score: 46.61 E-value: 8.45e-07
|
|||||||
AAA_25 | pfam13481 | AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
41-135 | 8.59e-07 | |||
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 45.83 E-value: 8.59e-07
|
|||||||
PRK06067 | PRK06067 | flagellar accessory protein FlaH; Validated |
52-107 | 2.26e-06 | |||
flagellar accessory protein FlaH; Validated Pssm-ID: 180381 Cd Length: 234 Bit Score: 44.96 E-value: 2.26e-06
|
|||||||
radB | PRK09361 | DNA repair and recombination protein RadB; Provisional |
50-112 | 4.27e-06 | |||
DNA repair and recombination protein RadB; Provisional Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 44.08 E-value: 4.27e-06
|
|||||||
PRK07773 | PRK07773 | replicative DNA helicase; Validated |
48-126 | 1.03e-05 | |||
replicative DNA helicase; Validated Pssm-ID: 236093 [Multi-domain] Cd Length: 886 Bit Score: 43.59 E-value: 1.03e-05
|
|||||||
PRK05636 | PRK05636 | replicative DNA helicase; Provisional |
17-114 | 1.69e-05 | |||
replicative DNA helicase; Provisional Pssm-ID: 180177 [Multi-domain] Cd Length: 505 Bit Score: 42.90 E-value: 1.69e-05
|
|||||||
RepA | COG3598 | RecA-family ATPase [Replication, recombination and repair]; |
65-119 | 2.20e-05 | |||
RecA-family ATPase [Replication, recombination and repair]; Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 42.58 E-value: 2.20e-05
|
|||||||
circ_KaiC | TIGR02655 | circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, ... |
50-125 | 1.03e-04 | |||
circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. [Cellular processes, Other] Pssm-ID: 131703 [Multi-domain] Cd Length: 484 Bit Score: 40.70 E-value: 1.03e-04
|
|||||||
XRCC3 | cd19491 | XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
58-131 | 1.19e-04 | |||
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site. Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 39.97 E-value: 1.19e-04
|
|||||||
PRK04328 | PRK04328 | hypothetical protein; Provisional |
48-111 | 1.73e-04 | |||
hypothetical protein; Provisional Pssm-ID: 235281 Cd Length: 249 Bit Score: 39.67 E-value: 1.73e-04
|
|||||||
PRK08533 | PRK08533 | flagellar accessory protein FlaH; Reviewed |
42-85 | 4.25e-04 | |||
flagellar accessory protein FlaH; Reviewed Pssm-ID: 181459 Cd Length: 230 Bit Score: 38.51 E-value: 4.25e-04
|
|||||||
FlaH | cd19475 | flagellar accessory protein FlaH; Flagellar accessory protein FlaH is part of the motor of the ... |
52-107 | 1.77e-03 | |||
flagellar accessory protein FlaH; Flagellar accessory protein FlaH is part of the motor of the archaellum membrane-anchored archaeal motility structure, together with FlaX and FlaI. FlaH forms a hexameric ring, and binds ATP which is essential for its interaction with FlaI and for archaellum assembly. Pssm-ID: 410883 Cd Length: 220 Bit Score: 36.81 E-value: 1.77e-03
|
|||||||
YddA | COG4178 | ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
68-93 | 2.74e-03 | |||
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]; Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 36.32 E-value: 2.74e-03
|
|||||||
RecA | COG0468 | RecA/RadA recombinase [Replication, recombination and repair]; |
40-125 | 2.80e-03 | |||
RecA/RadA recombinase [Replication, recombination and repair]; Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 36.30 E-value: 2.80e-03
|
|||||||
Rad51 | pfam08423 | Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
47-114 | 2.87e-03 | |||
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein. Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 36.13 E-value: 2.87e-03
|
|||||||
RecA | pfam00154 | recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
37-125 | 3.04e-03 | |||
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 36.22 E-value: 3.04e-03
|
|||||||
KaiC-N | cd19485 | N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
53-125 | 3.30e-03 | |||
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation. Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 35.81 E-value: 3.30e-03
|
|||||||
KaiC_arch | cd19486 | KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC ... |
52-111 | 3.31e-03 | |||
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation. Pssm-ID: 410894 Cd Length: 230 Bit Score: 35.91 E-value: 3.31e-03
|
|||||||
CcmA | COG4133 | ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
68-119 | 3.74e-03 | |||
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 35.53 E-value: 3.74e-03
|
|||||||
PRK09302 | PRK09302 | circadian clock protein KaiC; Reviewed |
42-125 | 3.97e-03 | |||
circadian clock protein KaiC; Reviewed Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 36.01 E-value: 3.97e-03
|
|||||||
Elp4 | cd19494 | Elongator subcomplex subunit Elp4; Elongator is a highly conserved multiprotein complex ... |
52-87 | 5.46e-03 | |||
Elongator subcomplex subunit Elp4; Elongator is a highly conserved multiprotein complex involved in RNA polymerase II-mediated transcriptional elongation and many other processes, including cytoskeleton organization, exocytosis, and tRNA modification. It is composed of two subcomplexes, Elp1-3 and Elp4-6. Elp4-6 forms a heterohexameric RecA-like ring structure, although they lack the key sequence signatures of ATPases. Pssm-ID: 410902 Cd Length: 259 Bit Score: 35.36 E-value: 5.46e-03
|
|||||||
Rad51 | cd19513 | RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
51-114 | 6.43e-03 | |||
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion. Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 34.99 E-value: 6.43e-03
|
|||||||
RecA | cd00983 | recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
47-125 | 7.33e-03 | |||
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 34.84 E-value: 7.33e-03
|
|||||||
recomb_RAD51 | TIGR02239 | DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
47-114 | 8.85e-03 | |||
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 34.70 E-value: 8.85e-03
|
|||||||
Herpes_Helicase | pfam02689 | Helicase; This family consists of Helicases from the Herpes viruses. Helicases are responsible ... |
32-84 | 9.00e-03 | |||
Helicase; This family consists of Helicases from the Herpes viruses. Helicases are responsible for the unwinding of DNA and are essential for replication and completion of the viral life cycle. Pssm-ID: 280797 Cd Length: 809 Bit Score: 35.07 E-value: 9.00e-03
|
|||||||
AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
68-135 | 9.20e-03 | |||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 34.27 E-value: 9.20e-03
|
|||||||
Blast search parameters | ||||
|