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Conserved domains on  [gi|37575002|gb|AAQ93428|]
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cytochrome b, partial (mitochondrion) [Amazona leucocephala caymanensis]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 718.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00119 185 LLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLV 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00119 265 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPV 344

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKILN 355
Cdd:MTH00119 345 EHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 718.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00119 185 LLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLV 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00119 265 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPV 344

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKILN 355
Cdd:MTH00119 345 EHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-350 7.19e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 371.82  E-value: 7.19e-128
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  81 YGSYlyKE----TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFF 156
Cdd:COG1290 113 YGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002 157 ALH-FLLPFMITSLVLIHLTFLHESGSNNPLGI----SSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNllGDPE 231
Cdd:COG1290 191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPP 268

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002 232 NFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANL 309
Cdd:COG1290 269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348

                       330       340       350       360
                ....*....|....*....|....*....|....*....|.
gi 37575002 310 FILTWVGSQPVehPFITIGQLASLSYFSIILILIPITSSLE 350
Cdd:COG1290 349 IVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-183 8.33e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 262.69  E-value: 8.33e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  81 YGSY--LYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:cd00284  96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFAL 175

                       170       180
                ....*....|....*....|....*
gi 37575002 159 HFLLPFMITSLVLIHLTFLHESGSN 183
Cdd:cd00284 176 HFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-181 2.31e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 235.74  E-value: 2.31e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002     1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    81 YG--SYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSL 166

                         170       180
                  ....*....|....*....|...
gi 37575002   159 HFLLPFMITSLVLIHLTFLHESG 181
Cdd:pfam00033 167 HFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 219-302 1.50e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 1.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   219 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAF-RPI 297
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPV 128


                  ....*
gi 37575002   298 SQLLF 302
Cdd:TIGR01156 129 ATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 718.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00119 105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00119 185 LLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLV 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00119 265 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPV 344

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKILN 355
Cdd:MTH00119 345 EHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 655.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00131  24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00131 104 YGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHF 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00131 184 LFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLV 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00131 264 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPV 343

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKILN 355
Cdd:MTH00131 344 EHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-354 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 654.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00100 104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHF 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00100 184 ILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLN 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00100 264 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPV 343

                        330       340       350
                 ....*....|....*....|....*....|....
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKIL 354
Cdd:MTH00100 344 EHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 629.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00074  25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00074 105 YGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00074 185 LLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLV 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00074 265 TPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPV 344

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKILN 355
Cdd:MTH00074 345 EDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 603.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00191  21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLY 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00191 101 YGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00191 181 LLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLV 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00191 261 TPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPV 340

                        330       340
                 ....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPI 345
Cdd:MTH00191 341 EDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-342 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 598.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00156  14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00156  94 YGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHF 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00156 174 LLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLV 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00156 254 TPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPV 333

                        330       340
                 ....*....|....*....|..
gi 37575002  321 EHPFITIGQLASLSYFSIILIL 342
Cdd:MTH00156 334 EEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-354 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 582.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00145  25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00145 105 YGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00145 185 LLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMV 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00145 265 TPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPV 344

                        330       340       350
                 ....*....|....*....|....*....|....
gi 37575002  321 EHPFITIGQLASLSYFSIILIlIPITSSLENKIL 354
Cdd:MTH00145 345 EEPYETIGQVFTVLYFLFFLI-LPLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-355 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 568.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00034  24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00034 104 YGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHF 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00034 184 LFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLV 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00034 264 TPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPV 343

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKILN 355
Cdd:MTH00034 344 EYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-354 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 540.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00016  25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00016 105 YGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00016 185 LLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLV 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00016 265 TPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPV 344

                        330       340       350
                 ....*....|....*....|....*....|....
gi 37575002  321 EHPFITIGQLASLSYFSiILILIPITSSLENKIL 354
Cdd:MTH00016 345 EPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLL 377
CYTB MTH00022
cytochrome b; Validated
 1-355 1.98e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 491.91  E-value: 1.98e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00022  23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00022 103 YGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHF 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00022 183 LFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLV 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00022 263 TPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVV 342

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKILN 355
Cdd:MTH00022 343 EEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-355 1.39e-174

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 489.99  E-value: 1.39e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00053  25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00053 105 YGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHY 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00053 185 LLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLV 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00053 265 TPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPV 344

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSIILILIPITSSLENKILN 355
Cdd:MTH00053 345 EEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-355 5.39e-163

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 460.54  E-value: 5.39e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00224  25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00224 105 YGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00224 185 LLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLV 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00224 265 TPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPV 344

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 37575002  321 EHPFITIGQLASLSYFSiILILIPITSSLENKILN 355
Cdd:MTH00224 345 EDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-351 1.05e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 393.92  E-value: 1.05e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00033  21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00033 101 YGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFS--PNLLGDPENFTPANP 238
Cdd:MTH00033 181 LLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANP 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  239 LVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTWVGSQ 318
Cdd:MTH00033 261 LVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSA 340

                        330       340       350
                 ....*....|....*....|....*....|....
gi 37575002  319 PV-EHPFITIGQLASLSYFSIILILIPITSSLEN 351
Cdd:MTH00033 341 PAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-350 7.19e-128

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 371.82  E-value: 7.19e-128
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  81 YGSYlyKE----TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFF 156
Cdd:COG1290 113 YGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002 157 ALH-FLLPFMITSLVLIHLTFLHESGSNNPLGI----SSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNllGDPE 231
Cdd:COG1290 191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPP 268

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002 232 NFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANL 309
Cdd:COG1290 269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348

                       330       340       350       360
                ....*....|....*....|....*....|....*....|.
gi 37575002 310 FILTWVGSQPVehPFITIGQLASLSYFSIILILIPITSSLE 350
Cdd:COG1290 349 IVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-342 4.49e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 348.08  E-value: 4.49e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:MTH00086  13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLF 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALHF 160
Cdd:MTH00086  93 MMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHF 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  161 LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGfMIMFFSLSTLALFSPNLLGDPENFTPANPLV 240
Cdd:MTH00086 173 LLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMM 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  241 TPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSkqrTMAFRPISQLLFWALAANLFILTWVGSQPV 320
Cdd:MTH00086 252 SPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLV 328

                        330       340
                 ....*....|....*....|..
gi 37575002  321 EHPFITIGQLASLSYFSIILIL 342
Cdd:MTH00086 329 EYPFLFLSQIFSFIYFFLILLM 350
CYTB MTH00046
cytochrome b; Validated
 1-341 1.57e-88

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 270.32  E-value: 1.57e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISA--WWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARG 78
Cdd:MTH00046  13 PTNYSLnyYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   79 FYYGSYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:MTH00046  93 LYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSV 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  159 HFLLPFMITSLVLIHLTFLHESGSNNPLGISSN-CDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPAN 237
Cdd:MTH00046 173 HICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEAD 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  238 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASVLILTLSPLLHKSKqrtmAFRPISQLLFWALAANLFILTWVGS 317
Cdd:MTH00046 253 PLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGG 327

                        330       340
                 ....*....|....*....|....
gi 37575002  318 QPVEHPFITIGQLASLSYFSIILI 341
Cdd:MTH00046 328 CHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-183 8.33e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 262.69  E-value: 8.33e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  81 YGSY--LYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:cd00284  96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFAL 175

                       170       180
                ....*....|....*....|....*
gi 37575002 159 HFLLPFMITSLVLIHLTFLHESGSN 183
Cdd:cd00284 176 HFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-181 2.31e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 235.74  E-value: 2.31e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002     1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    81 YG--SYLYKETWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSL 166

                         170       180
                  ....*....|....*....|...
gi 37575002   159 HFLLPFMITSLVLIHLTFLHESG 181
Cdd:pfam00033 167 HFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 184-331 9.25e-56

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 178.99  E-value: 9.25e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002 184 NPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 263
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37575002 264 KLGGVLALAASVLILTLSPLLHKSKQRTMaFRPISQLLFWALAANLFILTWVGSQPVEHPFITIGQLA 331
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
65-230 1.98e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.48  E-value: 1.98e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    65 SLFFICIYLHIARGFYYGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAW 142
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   143 GGFSVDNPTLTRFFALHF-LLPFMITSLVLIHLTFLHESGSNNPLGISSNCDKIPFHPYFSLKDLLGFMIMFFSLSTLAL 221
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 37575002   222 FSPNLLGDP 230
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
235-335 6.02e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 151.86  E-value: 6.02e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   235 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAFRPISQLLFWALAANLFILTW 314
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 37575002   315 VGSQPVEHPFITIGQLASLSY 335
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 10-186 1.44e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 126.36  E-value: 1.44e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   10 FGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFYYGSYLYKE- 88
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   89 -TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMI 166
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 37575002  167 TSLVLIHLTFLHESGSNNPL 186
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-186 7.10e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 116.36  E-value: 7.10e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002    1 PSNISAWWNFGSLLGVCLATQILTGLLLAAHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASLFFICIYLHIARGFY 80
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   81 YGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFAL 158
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 37575002  159 H-FLLPFMITSLVLIHLTFLHESGSNNPL 186
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 219-302 3.47e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.87  E-value: 3.47e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002  219 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHK-SKQRTMAFRPI 297
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPV 128


                 ....*
gi 37575002  298 SQLLF 302
Cdd:CHL00058 129 ATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 219-302 3.29e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.96  E-value: 3.29e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002 219 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAF-RPI 297
Cdd:COG5679  55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPV 129


                ....*
gi 37575002 298 SQLLF 302
Cdd:COG5679 130 ATAVF 134
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 219-302 1.50e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 1.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37575002   219 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILTLSPLLHKSKQRTMAF-RPI 297
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPV 128


                  ....*
gi 37575002   298 SQLLF 302
Cdd:TIGR01156 129 ATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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