NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|37548591|gb|AAN08395|]
View 

gp33 [Salmonella phage PSP3]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2732 super family cl12398
Protein of unknown function (DUF2732); This family of proteins has no known function.
 12-76 1.07e-21

Protein of unknown function (DUF2732); This family of proteins has no known function.


The actual alignment was detected with superfamily member pfam10809:

Pssm-ID: 431505  Cd Length: 74  Bit Score: 79.84  E-value: 1.07e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 37548591   12 NAGKNTLDELFKEAKKEERKDRALAVSIRLEALAIHITKEGMSGTEAAELLRREATRFENESQEL 76
Cdd:pfam10809 10 KADSEALAWLLTKARMEERKDRALSVSSRLDSLALHAIQEGLSRTEAAELLRQEAERFENESQEL 74
 
Name Accession Description Interval E-value
DUF2732 pfam10809
Protein of unknown function (DUF2732); This family of proteins has no known function.
 12-76 1.07e-21

Protein of unknown function (DUF2732); This family of proteins has no known function.


Pssm-ID: 431505  Cd Length: 74  Bit Score: 79.84  E-value: 1.07e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 37548591   12 NAGKNTLDELFKEAKKEERKDRALAVSIRLEALAIHITKEGMSGTEAAELLRREATRFENESQEL 76
Cdd:pfam10809 10 KADSEALAWLLTKARMEERKDRALSVSSRLDSLALHAIQEGLSRTEAAELLRQEAERFENESQEL 74
 
Name Accession Description Interval E-value
DUF2732 pfam10809
Protein of unknown function (DUF2732); This family of proteins has no known function.
 12-76 1.07e-21

Protein of unknown function (DUF2732); This family of proteins has no known function.


Pssm-ID: 431505  Cd Length: 74  Bit Score: 79.84  E-value: 1.07e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 37548591   12 NAGKNTLDELFKEAKKEERKDRALAVSIRLEALAIHITKEGMSGTEAAELLRREATRFENESQEL 76
Cdd:pfam10809 10 KADSEALAWLLTKARMEERKDRALSVSSRLDSLALHAIQEGLSRTEAAELLRQEAERFENESQEL 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH