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Conserved domains on  [gi|374276115|gb|AEZ02950|]
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glycoprotein precursor, partial [Orthohantavirus sangassouense]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hanta_G2 super family cl03264
Hantavirus/Nairovirus glycoprotein G2; The medium (M) genome segment of hantaviruses (family ...
 4-131 6.35e-11

Hantavirus/Nairovirus glycoprotein G2; The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins G1 and G2, as a polyprotein precursor. This entry represents the polyprotein region which forms the G2 glycoprotein. The N-terminal region has a conserved CNP motif, suggested to be an integrin-binding motif.


The actual alignment was detected with superfamily member pfam01561:

Pssm-ID: 460253  Cd Length: 457  Bit Score: 60.18  E-value: 6.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 374276115    4 TAKCHFEHDFQYENSWGCNPPDCPGVGTGCTACGLYLDQLKPVGSAYKLITVRYSRKVCVQFGEENLCKTIDMNDCFMSR 83
Cdd:pfam01561 100 TAKCHYERDYQYETSWGCNPSDCPGVGTGCTACGLYLDQLKPVGSAYKIITIRYSRRVCVQFGEENLCKIIDMNDCFVSR 179

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 374276115   84 HVKVCIIGTVSKFSQGDTLVFLGPLEGGGLIFKDWCTSTCQFGDPGDI 131
Cdd:pfam01561 180 HVKVCIIGTVSKFSQGDTLLFFGPLEGGGLIFKHWCTSTCQFGDPGDI 227
 
Name Accession Description Interval E-value
Hanta_G2 pfam01561
Hantavirus/Nairovirus glycoprotein G2; The medium (M) genome segment of hantaviruses (family ...
 4-131 6.35e-11

Hantavirus/Nairovirus glycoprotein G2; The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins G1 and G2, as a polyprotein precursor. This entry represents the polyprotein region which forms the G2 glycoprotein. The N-terminal region has a conserved CNP motif, suggested to be an integrin-binding motif.


Pssm-ID: 460253  Cd Length: 457  Bit Score: 60.18  E-value: 6.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 374276115    4 TAKCHFEHDFQYENSWGCNPPDCPGVGTGCTACGLYLDQLKPVGSAYKLITVRYSRKVCVQFGEENLCKTIDMNDCFMSR 83
Cdd:pfam01561 100 TAKCHYERDYQYETSWGCNPSDCPGVGTGCTACGLYLDQLKPVGSAYKIITIRYSRRVCVQFGEENLCKIIDMNDCFVSR 179

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 374276115   84 HVKVCIIGTVSKFSQGDTLVFLGPLEGGGLIFKDWCTSTCQFGDPGDI 131
Cdd:pfam01561 180 HVKVCIIGTVSKFSQGDTLLFFGPLEGGGLIFKHWCTSTCQFGDPGDI 227
 
Name Accession Description Interval E-value
Hanta_G2 pfam01561
Hantavirus/Nairovirus glycoprotein G2; The medium (M) genome segment of hantaviruses (family ...
 4-131 6.35e-11

Hantavirus/Nairovirus glycoprotein G2; The medium (M) genome segment of hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins G1 and G2, as a polyprotein precursor. This entry represents the polyprotein region which forms the G2 glycoprotein. The N-terminal region has a conserved CNP motif, suggested to be an integrin-binding motif.


Pssm-ID: 460253  Cd Length: 457  Bit Score: 60.18  E-value: 6.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 374276115    4 TAKCHFEHDFQYENSWGCNPPDCPGVGTGCTACGLYLDQLKPVGSAYKLITVRYSRKVCVQFGEENLCKTIDMNDCFMSR 83
Cdd:pfam01561 100 TAKCHYERDYQYETSWGCNPSDCPGVGTGCTACGLYLDQLKPVGSAYKIITIRYSRRVCVQFGEENLCKIIDMNDCFVSR 179

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 374276115   84 HVKVCIIGTVSKFSQGDTLVFLGPLEGGGLIFKDWCTSTCQFGDPGDI 131
Cdd:pfam01561 180 HVKVCIIGTVSKFSQGDTLLFFGPLEGGGLIFKHWCTSTCQFGDPGDI 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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