|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
76-620 |
2.89e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 2.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 76 QSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKES 155
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 156 NTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILElkcnLENKKEEVSR 235
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE----LEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 236 LEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEkfhnelnahiklsnlyksAADDSEAKSNELTRAVEELHKLLK 315
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE------------------ALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 316 EAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKL 395
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 396 TELYNAYVETQDQLLLEKLENKRinkyldeivkEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKA 475
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVED----------DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 476 NKQSSVLERDNRRMEIQVKDLSQQIRVLLMEleeaRGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLV 555
Cdd:COG1196 603 LVASDLREADARYYVLGDTLLGRTLVAARLE----AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 37258 556 ALRELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQ 620
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
53-595 |
1.17e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 53 QYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNE 132
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 133 RLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQAS-DVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLAL 211
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEElEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 212 GR--EKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLY 289
Cdd:COG1196 393 RAaaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 290 KSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAI 369
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 370 LSEEELAAMSPTAAAVAKI----------VKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKR 439
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAgratflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 440 QREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDE 519
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 520 EVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLES-------ALTELEQ 592
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllAIEEYEE 792
|
...
gi 37258 593 LRK 595
Cdd:COG1196 793 LEE 795
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
42-612 |
3.63e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 3.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 42 RHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELE 121
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 122 AEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTEL 201
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 202 KTKTDELLALGREKGN--------EILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE 273
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEaelkelqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 274 KFHNELNAHIKLSNLYKSAADDSEAKS---------NELTRAVEE-----LHKLLKEAGEANKAIQDHLLEVEQSK---- 335
Cdd:TIGR02168 497 LQENLEGFSEGVKALLKNQSGLSGILGvlselisvdEGYEAAIEAalggrLQAVVVENLNAAKKAIAFLKQNELGRvtfl 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 336 -------DQMEKEMLEKIGRLEKELENANDLLSATKRK----GAILSEEELAAMSPTAAAVAKIVKPGMKLTEL------ 398
Cdd:TIGR02168 577 pldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkalSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLdgdlvr 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 399 -----YNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTD 473
Cdd:TIGR02168 657 pggviTGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 474 KANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGnHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRL 553
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 554 LVALRELGETREREEQETTSSK-----------------------ITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQ 610
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATErrledleeqieelsedieslaaeIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
..
gi 37258 611 RD 612
Cdd:TIGR02168 896 LE 897
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
76-349 |
4.16e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 4.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 76 QSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKES 155
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 156 NTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELlalgREKGNEILELKCNLENKKEEVSR 235
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL----DELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 236 LEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLK 315
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270
....*....|....*....|....*....|....*..
gi 37258 316 EAGEANKAI---QDHLLEVEQSKDQMEKEMLEKIGRL 349
Cdd:TIGR02168 909 KRSELRRELeelREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-388 |
5.28e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 5.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 56 EIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKAlTEKNKELEiAQDRNIAIQSQFTRtKEELEAEKRDLIRTNERLS 135
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLERQAEK-AERYKELK-AELRELELALLVLR-LEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 136 QELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREK 215
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 216 gneilelkcnlENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADD 295
Cdd:TIGR02168 333 -----------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 296 SEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKigrLEKELENANDLLSATKRKGAILSEEEL 375
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE---LQEELERLEEALEELREELEEAEQALD 478
|
330
....*....|...
gi 37258 376 AAMSPTAAAVAKI 388
Cdd:TIGR02168 479 AAERELAQLQARL 491
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
213-553 |
9.67e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 9.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 213 REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSA 292
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 293 ADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEkEMLEKIGRLEKELENANDLLSATKRKGAILsE 372
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE-QLKEELKALREALDELRAELTLLNEEAANL-R 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 373 EELAAMSPTAAAVAKivkpgmKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVA 452
Cdd:TIGR02168 824 ERLESLERRIAATER------RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 453 SLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLL-MELEEARGNHVIRD---EEVSSADISS 528
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYsLTLEEAEALENKIEddeEEARRRLKRL 977
|
330 340
....*....|....*....|....*
gi 37258 529 SSEVISQHLVSYRNIEELQQQNQRL 553
Cdd:TIGR02168 978 ENKIKELGPVNLAAIEEYEELKERY 1002
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
47-715 |
1.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 47 KVESEQQYFEIEKRLSHSQERLVneTRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRD 126
Cdd:TIGR02168 208 QAEKAERYKELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 127 LIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTD 206
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 207 ELLALgrEKGNEilELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH-NELNAHIKL 285
Cdd:TIGR02168 366 ELEEL--ESRLE--ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeAELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 286 SNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEM--LEKIGRLEKELENANDLLSAT 363
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQenLEGFSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 364 K-RKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQ--------LLLEKLENKRINKYLDEIVKEVEAKA 434
Cdd:TIGR02168 522 LgVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQnelgrvtfLPLDSIKGTEIQGNDREILKNIEGFL 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 435 PILKRQREEYERAQKAVASL------SVKLEQAMKEIQRLQEDTD------------------KANKQSSVLERDN--RR 488
Cdd:TIGR02168 602 GVAKDLVKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggSAKTNSSILERRReiEE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 489 MEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYR-NIEELQQQNQRLLVALRELGETRERE 567
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlARLEAEVEQLEERIAQLSKELTELEA 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 568 EQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIvrqRDMYRILLSQTTGVAIPLHASSLDDVSLASTPKRPST 647
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL---REALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 37258 648 SQTVSTPAPVPVIESTEAIEA-----KAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKIS 715
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAeieelEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-612 |
1.51e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 27 KFLADQQSEID-GLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKlnnqlkALTEKNKELEIAQDR 105
Cdd:TIGR02168 216 KELKAELRELElALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL------EVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 106 NIAIQSQftrtKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQ 185
Cdd:TIGR02168 290 LYALANE----ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 186 EKELLHSQNTWLNTELKTKTDELLALGREKG---NEILELKCNLENKKEEVSRL-------------------EEQMNGL 243
Cdd:TIGR02168 366 ELEELESRLEELEEQLETLRSKVAQLELQIAslnNEIERLEARLERLEDRRERLqqeieellkkleeaelkelQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 244 KTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAG----- 318
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvl 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 319 ------------------------------EANKAIQDHLLEVEQSK-----------DQMEKEMLEKIGRLEKELENAN 357
Cdd:TIGR02168 526 selisvdegyeaaieaalggrlqavvvenlNAAKKAIAFLKQNELGRvtflpldsikgTEIQGNDREILKNIEGFLGVAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 358 DLLSATKRK----GAILSEEELAAMSPTAAAVAKIVKPGMKLTEL-----------YNAYVETQDQLLLEKLENKRINKY 422
Cdd:TIGR02168 606 DLVKFDPKLrkalSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLdgdlvrpggviTGGSAKTNSSILERRREIEELEEK 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 423 LDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRV 502
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 503 LLMELEEARGnHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSK--ITELQ 580
Cdd:TIGR02168 766 LEERLEEAEE-ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATErrLEDLE 844
|
650 660 670
....*....|....*....|....*....|..
gi 37258 581 LKLESALTELEQLRKSRQHQMQLVDSIVRQRD 612
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELE 876
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-355 |
6.15e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 6.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 56 EIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLS 135
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 136 QELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSqntwLNTELKTKTDELLALGREK 215
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE----EAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 216 GNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLL-------TKLKEAKEQQASMEEKFHNELNAHIKLSNL 288
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLnerasleEALALLRSELEELSEELRELESKRSELRRE 916
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37258 289 YKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELEN 355
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-324 |
1.83e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 49 ESEQQYFEIEK---RLSHSQERLVNETRECQSLRLELEK----LNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELE 121
Cdd:TIGR02168 688 ELEEKIAELEKalaELRKELEELEEELEQLRKELEELSRqisaLRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 122 AEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTEL 201
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 202 KTKTDELLALGRE---KGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH-- 276
Cdd:TIGR02168 848 EELSEDIESLAAEieeLEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAql 927
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 37258 277 ----NELNAHI-----KLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAI 324
Cdd:TIGR02168 928 elrlEGLEVRIdnlqeRLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
30-520 |
3.75e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 30 ADQQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNK----ELEIAQDR 105
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEaaadEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 106 NIAIQSQFTRTKEELEAEKRDliRTNERLSQELEYLTEDVKRLNEKLKESNTTKG---ELQLKLDEL-QASDVSVKYREK 181
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKK--AEEKKKADEAKKKAEEDKKKADELKKAAAAKKkadEAKKKAEEKkKADEAKKKAEEA 1443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 182 RLEQE-----KELLHSQNTWLNTELKTKTDELLALGREKgNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVED 256
Cdd:PTZ00121 1444 KKADEakkkaEEAKKAEEAKKKAEEAKKADEAKKKAEEA-KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 257 LLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKD 336
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 337 QMEKEMLEKIGRLEKELENANDLLSAtkrkgailsEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLEN 416
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKA---------EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 417 KRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDL 496
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
490 500
....*....|....*....|....
gi 37258 497 SQQIRVLLMELEEARGNHVIRDEE 520
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEK 1777
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
117-612 |
7.15e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 7.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 117 KEELEAEKRDLIRTNERLSQELEYLTEDVKRLN------EKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELL 190
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQaaikaeEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 191 HSQNTWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQAS 270
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 271 MEEKFHNELNA-HIKLSNLYKSAADDSEAKSNELTRAvEELHKLLKE---AGEANKAIQDHLLEVEQSKDQMEKEMLEKI 346
Cdd:PTZ00121 1397 KKKAEEDKKKAdELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEakkADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 347 GRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYvETQDQLLLEKLENKRinkYLDEI 426
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKAEEKK---KADEL 1551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 427 VKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLME 506
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE 1631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 507 LEEARGNHVIRDEEVSSADISSSSE---VISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKL 583
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEeenKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKE 1711
|
490 500
....*....|....*....|....*....
gi 37258 584 ESALTELEQLRKSRQHQMQLVDSIVRQRD 612
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
53-354 |
8.98e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 8.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 53 QYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLK-ALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLirtn 131
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSqELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL---- 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 132 ERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEK-ELLHSQNTWLNTELKTKTDELLA 210
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKlEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 211 LgrekgNEILELKcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKfHNELNAHIKLSNLYK 290
Cdd:TIGR02169 827 E-----KEYLEKE--IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERDELEAQL 898
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37258 291 SAAddsEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEK--IGRLEKELE 354
Cdd:TIGR02169 899 REL---ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsLEDVQAELQ 961
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
83-612 |
1.08e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 83 EKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKR--DLIRTNER-LSQELEYLTEDVKRLNEKLKESNTTK 159
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLReiNEISSELPeLREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 160 GELQLKLDELQASDVSVKYREKRLEQEKELLHsqntwlntELKTKTDELLALgREKGNEILELKCNLENKKEEVSRLEEQ 239
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIE--------ELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 240 MNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE--KFHNELNAHIKLSNLYKSAADDSEAKSNELT-RAVEELHKLLKE 316
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEELKKKLKEleKRLEELEERHELYEEAKAKKEELERLKKRLTgLTPEKLEKELEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 317 AGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEkELENANDLLSATKRKgaILSEEELAAMSPTAAAVAKIVKPGMKLT 396
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIE-ELKKAKGKCPVCGRE--LTEEHRKELLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 397 ELYNAYVETQDQLLLEKLENKRINKYLD--EIVKEVEAK-----APILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQ 469
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKESELIKLKElaEQLKELEEKlkkynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 470 EdtdkANKQSSVLERDNRRMEIQVKDLSQQIRVL-----------LMELEEARGNHV-IRDEEVSSADISSSSEVISQHL 537
Cdd:PRK03918 553 E----LKKKLAELEKKLDELEEELAELLKELEELgfesveeleerLKELEPFYNEYLeLKDAEKELEREEKELKKLEEEL 628
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37258 538 V-SYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRD 612
Cdd:PRK03918 629 DkAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
177-718 |
2.58e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 177 KYREKRLEQEKELLHSQNtwlN----------------------------TELKTKTDELLAlgREKGNEILELKCNLEN 228
Cdd:COG1196 169 KYKERKEEAERKLEATEE---NlerledilgelerqleplerqaekaeryRELKEELKELEA--ELLLLKLRELEAELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 229 KKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVE 308
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 309 ELHKLLKEAGEANKAIQDHLLEVEQSKDQMEkEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKI 388
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELE-EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 389 VKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRL 468
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 469 QEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQ 548
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 549 QNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMyRILLSQTTGVAIPL 628
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL-VAARLEAALRRAVT 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 629 HASSLDDVSLASTPKRPSTSQTVSTPAPVPVIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLR 708
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570
....*....|
gi 37258 709 SQNTKISTQL 718
Cdd:COG1196 722 EEEALEEQLE 731
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
25-273 |
4.45e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 25 LEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLvneTRECQSLRLELEKLNNQLKaltEKNKELEIAQD 104
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIA---EKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 105 RNIAIQSQFTRTKEELEAEKRDLIRTNER----------LSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDV 174
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRrdklteeyaeLKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 175 SVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQ 251
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEeekEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
|
250 260
....*....|....*....|..
gi 37258 252 KHVEDLLTKLKEAKEQQASMEE 273
Cdd:TIGR02169 483 KELSKLQRELAEAEAQARASEE 504
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
11-344 |
5.94e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 5.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 11 RTELNKLPKSVQNKLEKF---LADQQSEIDGLKGRHEKFKVESEQQYFEI---EKRLSHSQERLVNETRECQSLRLELEK 84
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLApdkLKSTESELKKKEKRRDEMLGLAPGRQSIIdlkEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 85 LNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEE--------LEAEKRDLIRTNERLSQELEYLTEDVKRLNEK----- 151
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVerkiaqqaAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKielnr 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 152 --LKESNTTKGELQLKLDELQASDVSVK---YREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILELKCNL 226
Cdd:TIGR00606 850 klIQDQQEQIQHLKSKTNELKSEKLQIGtnlQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 227 ENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRA 306
Cdd:TIGR00606 930 SSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT 1009
|
330 340 350
....*....|....*....|....*....|....*...
gi 37258 307 VEELHKLLKEAGEANKaIQDHLLEVEQSKDQMEKEMLE 344
Cdd:TIGR00606 1010 QKIQERWLQDNLTLRK-RENELKEVEEELKQHLKEMGQ 1046
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
40-600 |
7.38e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 7.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 40 KGRHEKFKVESEQQYFEIEKrlsHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEE 119
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRK---FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 120 leaeKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKEllHSQNTWLNT 199
Cdd:PTZ00121 1314 ----AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK--KADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 200 ELKTKTDELLALGREKGNEILELKCNLENKKEeVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNEL 279
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKK-ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 280 NAHIKLSNLYKSAadDSEAKSNELTRAVEELHKLLKEAGEANKAIQdhllEVEQSKDQMEKEMLEKIGRLEkELENANDL 359
Cdd:PTZ00121 1467 EEAKKADEAKKKA--EEAKKADEAKKKAEEAKKKADEAKKAAEAKK----KADEAKKAEEAKKADEAKKAE-EAKKADEA 1539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 360 LSATKRKGAilsEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLllEKLENKRINKYLDEIVKEVEAKAPILKR 439
Cdd:PTZ00121 1540 KKAEEKKKA---DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA--KKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 440 QREEYERAQKAVaslsvKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQirvllmELEEARGNHVIRDE 519
Cdd:PTZ00121 1615 AEEAKIKAEELK-----KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK------AEEDKKKAEEAKKA 1683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 520 EvssADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELgetreREEQETTSSKITELQLKLESALTELEQLRKSRQH 599
Cdd:PTZ00121 1684 E---EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL-----KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
.
gi 37258 600 Q 600
Cdd:PTZ00121 1756 K 1756
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
44-490 |
1.42e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 44 EKFKVESEQQYFEIEKRLShsqeRLVNETRECQSLRLELEKLNNQLKALTEKNKELEiaqdRNIAIQSQFTRTKEELEAE 123
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLS----RLEEEINGIEERIKELEEKEERLEELKKKLKELE----KRLEELEERHELYEEAKAK 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 124 KRDLirtnERLSQELEYLTedVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKT 203
Cdd:PRK03918 371 KEEL----ERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 204 KTDEllalgrEKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHV--EDLLTKLKEAKEQQASMEEKFhnelna 281
Cdd:PRK03918 445 LTEE------HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKL------ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 282 hiklsnlyksaaddSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEK--EMLEKIGRLEKELENANDL 359
Cdd:PRK03918 513 --------------KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKlaELEKKLDELEEELAELLKE 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 360 LSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPIL-- 437
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYse 658
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 37258 438 ---KRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRME 490
Cdd:PRK03918 659 eeyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
22-352 |
1.50e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 22 QNKLEKFLADQQSEIDGLKGRHEKFKVESEQqyfeIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEi 101
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE- 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 102 aqdrniaiqSQFTRTKEELEAEKRDL----IRTNERLSQEL-EYLTEDVKRLNE---KLKESNTTKGELQLKLDELQASD 173
Cdd:TIGR02169 772 ---------EDLHKLEEALNDLEARLshsrIPEIQAELSKLeEEVSRIEARLREieqKLNRLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 174 VSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNeileLKCNLENKKEEVSRLEEQMNGLKTSNEHLQKH 253
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD----LKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 254 VEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLyksaaDDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQ 333
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-----EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKE 993
|
330 340
....*....|....*....|..
gi 37258 334 SKDQMEKE---MLEKIGRLEKE 352
Cdd:TIGR02169 994 KRAKLEEErkaILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-596 |
1.96e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 227 ENKKEEVSRLEEqmnglktSNEHLQKhVEDLLTKLKEAK---EQQASMEEKFHnELNAHIK------LSNLYKSAADDSE 297
Cdd:TIGR02168 172 ERRKETERKLER-------TRENLDR-LEDILNELERQLkslERQAEKAERYK-ELKAELRelelalLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 298 AKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEqskdqmekEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAA 377
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVS--------ELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 378 MSPTAAAVAKIVKPGMKLTELynayvetqdQLLLEKLENKrinkyLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVK 457
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDEL---------AEELAELEEK-----LEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 458 LEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADissssevisqhl 537
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE------------ 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 37258 538 vsyrnIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRKS 596
Cdd:TIGR02168 449 -----LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
19-507 |
2.61e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 19 KSVQNKLEKFLADQQSEIDGLKGRHEKFK------VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKal 92
Cdd:TIGR04523 172 ENELNLLEKEKLNIQKNIDKIKNKLLKLElllsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS-- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 93 tEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQ---ELEYLTED-----VKRLNEKLKESNTTKGELQL 164
Cdd:TIGR04523 250 -NTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQlksEISDLNNQkeqdwNKELKSELKNQEKKLEEIQN 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 165 KLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKG----------NEILELKCNLENKKEEVS 234
Cdd:TIGR04523 329 QISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsykqeiknleSQINDLESKIQNQEKLNQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 235 RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH------NELNAHIK--------LSNLYKSAADDSEAKS 300
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSvkeliiKNLDNTREsletqlkvLSRSINKIKQNLEQKQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 301 NELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSK---DQMEKEMLEK---IGRLEKELENANDLLSATKRKGAILSEEE 374
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKekiEKLESEKKEKeskISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 375 laamsptaaavaKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 454
Cdd:TIGR04523 569 ------------EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 37258 455 SVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMEL 507
Cdd:TIGR04523 637 KSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKEL 689
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
84-373 |
5.02e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.43 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 84 KLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQ 163
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 164 LKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILE---LKCNLENKKEEVSRLEEQM 240
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAErkqLQAKLQQTEEELRSLSKEF 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 241 NGLK-------TSNEHLQKHVEDLLTKLKEAKEQQASMEEkFHNELNAHIKLSNLYKSAAD----DSEAKSNELTRAVEE 309
Cdd:pfam07888 195 QELRnslaqrdTQVLQLQDTITTLTQKLTTAHRKEAENEA-LLEELRSLQERLNASERKVEglgeELSSMAAQRDRTQAE 273
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 37258 310 LHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEE 373
Cdd:pfam07888 274 LHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEE 337
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
29-217 |
7.91e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 7.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 29 LADQQSEIDGLKGRHEKFK-VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEiaqdrnI 107
Cdd:COG4913 257 IRELAERYAAARERLAELEyLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE------A 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 108 AIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLkesNTTKGELQLKLDELQASDVSVKYREKRLEQEK 187
Cdd:COG4913 331 QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL---PASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190
....*....|....*....|....*....|
gi 37258 188 ELLHSQNTWLNTELKTKTDELLALGREKGN 217
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1-474 |
9.28e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 9.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 1 MAAVLQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFkvesEQQYFEIEKRLSHSQERLVNETRECQSLRL 80
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL----AEELLEALRAAAELAAQLEELEEAEEALLE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 81 ELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKG 160
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 161 ELQLKLDELQASDVSVKYREKRLEQEK--ELLHSQNTWLNTELKTKTDELLALGREKGNEILE--LKCNLENKKEEVSRL 236
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGLRGlaGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaAAAIEYLKAAKAGRA 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 237 E----EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHK 312
Cdd:COG1196 575 TflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 313 LLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPG 392
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 393 MKLTELYNAYVETQDQLLLEKLEnkrinkyLDEIVKEVEAKAPILKRQR-----------EEYERAQKAVASLSVK---L 458
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELP-------EPPDLEELERELERLEREIealgpvnllaiEEYEELEERYDFLSEQredL 807
|
490
....*....|....*.
gi 37258 459 EQAMKEIQRLQEDTDK 474
Cdd:COG1196 808 EEARETLEEAIEEIDR 823
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2-214 |
1.25e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 2 AAVLQQVLERTELNKLPKSVQNKL---EKFLADQQSEIDGLKGRHEkfkvESEQQYFEIEKRLSHSQERLVNETRECQSL 78
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIaelEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 79 RLELEKLNNQLKALTEKNKELEIAQDRNiaiqSQFTRTKEELEAEK-RDLIRTNERLSQELEYLTEDVKRLNEKLKESNT 157
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRL----GRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 37258 158 TKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGRE 214
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
42-615 |
1.32e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 42 RHEKFKVESEQQYFEIEKRLSHSQE----RLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTK 117
Cdd:PTZ00121 1105 KTETGKAEEARKAEEAKKKAEDARKaeeaRKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKA 1184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 118 EELEaEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREK-------RLEQEKELL 190
Cdd:PTZ00121 1185 EEVR-KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEernneeiRKFEEARMA 1263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 191 H--SQNTWLNTELKTKTDELLALGREKGNEilELKCNLENKK-EEVSRLEEQ---MNGLKTSNEHLQKHVEDLLTKLKEA 264
Cdd:PTZ00121 1264 HfaRRQAAIKAEEARKADELKKAEEKKKAD--EAKKAEEKKKaDEAKKKAEEakkADEAKKKAEEAKKKADAAKKKAEEA 1341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 265 K---EQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKL--LKEAGEANKAIQDHLLEVEQSKDQME 339
Cdd:PTZ00121 1342 KkaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdeAKKKAEEDKKKADELKKAAAAKKKAD 1421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 340 K-----EMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTA--AAVAKIVKPGMKLTELYNAYVETQDQLLLE 412
Cdd:PTZ00121 1422 EakkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAkkADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 413 KLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQ 492
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 493 VKDLSQQIrvllmelEEARGNHVIR---DEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQ 569
Cdd:PTZ00121 1582 KAEEAKKA-------EEARIEEVMKlyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 37258 570 ETTSSKI--TELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYR 615
Cdd:PTZ00121 1655 AEEENKIkaAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
70-370 |
1.39e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 70 NETRECQSLRLELEKLnnqlkALTEKNKELEIAQDRNIAIQSQFtrtkEELEAEKRDLIRTNERLSQELEYLTEDVKRLN 149
Cdd:TIGR02169 208 EKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL----ASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 150 EKLKE-SNTTKGELQLKLDELQASDVSVKYREKRLEQEKEllhsqntwlntELKTKTDELLALGREKGNEILELKCNLEN 228
Cdd:TIGR02169 279 KKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-----------DAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 229 KKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKF------HNELNAHI-KLSNLYKSAADDSEAKSN 301
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLeklkreINELKRELdRLQEELQRLSEELADLNA 427
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37258 302 ELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMlEKIGRLEKELENANDLLSATKRKGAIL 370
Cdd:TIGR02169 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE-QELYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
110-511 |
1.50e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 110 QSQFTRTKEELEA-EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQL----------KLDELQA------S 172
Cdd:PRK02224 186 RGSLDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEvleeheerreELETLEAeiedlrE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 173 DVSVKYREKrlEQEKELLHSQNTWLNtELKTKTDELLA---LGREKGNEILELKCNLENKKEEV-SRLEEQMNGLKTSN- 247
Cdd:PRK02224 266 TIAETERER--EELAEEVRDLRERLE-ELEEERDDLLAeagLDDADAEAVEARREELEDRDEELrDRLEECRVAAQAHNe 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 248 --EHLQKHVEDLLTKLKEAKEQQASMEEKFHNElnahiklsnlyKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQ 325
Cdd:PRK02224 343 eaESLREDADDLEERAEELREEAAELESELEEA-----------REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 326 DHLLEVEQSKD---QMEKEMLEKIGRLEKELENANDLLSATK--------------------RKGAILSEEELAAMSPTA 382
Cdd:PRK02224 412 DFLEELREERDelrEREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvetieedRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 383 AAVAKIVKPGMKLtelynayVETQDQllLEKLENKRinkylDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAM 462
Cdd:PRK02224 492 EEVEERLERAEDL-------VEAEDR--IERLEERR-----EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 37258 463 KEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLsQQIRVLLMELEEAR 511
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAE 605
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
167-501 |
2.58e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 167 DELQASDVSVKYREKRLEQEKELLHSQNTWLNTEL---KTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGL 243
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALaelRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 244 KTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH------NELNAHI-KLSNLYKSAADDSEAKSNELTRAVEELHKL--- 313
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaeiEELEAQIeQLKEELKALREALDELRAELTLLNEEAANLrer 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 314 LKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAA---AVAKIVK 390
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEleeLSEELRE 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 391 PGMKLTELYNAYVETQD-----QLLLEKLENKRINKY----------LDEIVKEVEAKAPILKRQREEYERAQKAVASLS 455
Cdd:TIGR02168 906 LESKRSELRRELEELREklaqlELRLEGLEVRIDNLQerlseeysltLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 37258 456 VKLEQAMKEIQRLQEDTDKANKQS-----------SVLERDNRRMEIQVKDLSQQIR 501
Cdd:TIGR02168 986 PVNLAAIEEYEELKERYDFLTAQKedlteaketleEAIEEIDREARERFKDTFDQVN 1042
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
177-559 |
3.73e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 177 KYREKRLEQEKellhsqntwlntelktktdellalgrekgneilelkcNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEd 256
Cdd:TIGR02168 169 KYKERRKETER-------------------------------------KLERTRENLDRLEDILNELERQLKSLERQAE- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 257 lltKLKEAKEQQASMEEKfhnelnAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEqskd 336
Cdd:TIGR02168 211 ---KAERYKELKAELREL------ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS---- 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 337 qmekEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLEN 416
Cdd:TIGR02168 278 ----ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 417 KRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQE-----DTDKANKQSSVLERDNRRMEI 491
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEArlerlEDRRERLQQEIEELLKKLEEA 433
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37258 492 QVKDLSQQIRVLLMELEEARGNHviRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRE 559
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEEL--ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
13-511 |
4.21e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 13 ELNKLPKSVQNKLEKFLADQQSEIDGLKGRHE-------KFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKL 85
Cdd:pfam15921 246 QLEALKSESQNKIELLLQQHQDRIEQLISEHEveitgltEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLEST 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 86 NNQLKALTEKNKELeiAQDRNIAIQSQFTRTKEEL---EAEKRDLIRTNERLSQELEYLTEDvkrLNEKLKESNTTKGEL 162
Cdd:pfam15921 326 VSQLRSELREAKRM--YEDKIEELEKQLVLANSELteaRTERDQFSQESGNLDDQLQKLLAD---LHKREKELSLEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 163 QLKLDELQASDVSVKYREKRLEQ---EKELLHSQNTWLNTELKTKTDELLALGREKgNEILE----LKCNLENKKEEVSR 235
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRELDDrnmEVQRLEALLKAMKSECQGQMERQMAAIQGK-NESLEkvssLTAQLESTKEMLRK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 236 LEEQMNGLKTSNEHLQKHVEDLLTKLKEaKEQQASMEEKFHNELNAHIKLSnlyksaaddseaksneltraVEELHKLLK 315
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTASLQE-KERAIEATNAEITKLRSRVDLK--------------------LQELQHLKN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 316 EageankaiQDHLLEVEQSKDQMEKEMLEK---IGRLEKELENANDLLSATKRK-GAILSEEelaamsptaaavAKIVKp 391
Cdd:pfam15921 539 E--------GDHLRNVQTECEALKLQMAEKdkvIEILRQQIENMTQLVGQHGRTaGAMQVEK------------AQLEK- 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 392 gmkltELYNAYVETQDqllLEKLENKRinkylDEIVKEVEAKAPILKRQREEYERAQ----KAVASLSVKLEQAMKEIQR 467
Cdd:pfam15921 598 -----EINDRRLELQE---FKILKDKK-----DAKIRELEARVSDLELEKVKLVNAGserlRAVKDIKQERDQLLNEVKT 664
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 37258 468 LQEDTDKANKQSSVLERDNR----RMEIQVKDLSQQIRVLLMELEEAR 511
Cdd:pfam15921 665 SRNELNSLSEDYEVLKRNFRnkseEMETTTNKLKMQLKSAQSELEQTR 712
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
49-273 |
4.83e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 49 ESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEiaqdrniaiqsqftRTKEELEAEKRDLI 128
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE--------------QELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 129 RTNERLSQELEYLTEDVKRLNEKL-KESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLhsqntwlnTELKTKTDE 207
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA--------EELRADLAE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37258 208 LLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE 273
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
25-595 |
6.04e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 25 LEKFLAdQQSEIDGLKGRHEKFKVESEQQYFEIEKRLshsqERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQD 104
Cdd:PRK03918 181 LEKFIK-RTENIEELIKEKEKELEEVLREINEISSEL----PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 105 RNIAIQSQFTRTKEELEAEKRDLiRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLE 184
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEEL-EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 185 QEKELLHsqntWLNTELKTKTDELLALGR--EKGNEILELKCNLENKK-----EEVSRLEEQMNGLKTSNEHLQKHVEDL 257
Cdd:PRK03918 335 EKEERLE----ELKKKLKELEKRLEELEErhELYEEAKAKKEELERLKkrltgLTPEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 258 LTKLKEAKEQQASMEEKFhNELNAHIKLSNLYKSAADDSEAKS--NELTRAVEELHKLLKEAGEANKAIQDHLLEVE--- 332
Cdd:PRK03918 411 TARIGELKKEIKELKKAI-EELKKAKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEkvl 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 333 --QSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLL 410
Cdd:PRK03918 490 kkESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 411 LEKLE-NKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVAslsvKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRM 489
Cdd:PRK03918 570 EELAElLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK----ELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 490 EIQVKDLSQqirvllmeleeargnhvIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQ 569
Cdd:PRK03918 646 RKELEELEK-----------------KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
570 580
....*....|....*....|....*.
gi 37258 570 ETTSSKitelqlKLESALTELEQLRK 595
Cdd:PRK03918 709 AKKELE------KLEKALERVEELRE 728
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
32-356 |
8.58e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 8.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 32 QQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTE--KNKELEIAQDRNIAi 109
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfkNNKEVELEELKKIL- 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 110 qsqftrtkeeleAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKEL 189
Cdd:pfam05483 415 ------------AEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEK 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 190 LHSQNTWLNTELKTKTDELLALGREKGNEILELKCNLE---NKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKE 266
Cdd:pfam05483 483 EKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEdiiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGD 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 267 QQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKemleKI 346
Cdd:pfam05483 563 EVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEI----KV 638
|
330
....*....|
gi 37258 347 GRLEKELENA 356
Cdd:pfam05483 639 NKLELELASA 648
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
160-501 |
1.11e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 160 GELQLKLDELQASDVSVKYREKRLEQEKELLHSQNtwlntELKTKTDELLalGREKGNEILELKCNLENKKEEVSRLEEQ 239
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQ-----ALLKEKREYE--GYELLKEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 240 MNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHI-KLSNLYKSAADDSEAKSNELTRAVEELHKLLKEag 318
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgELEAEIASLERSIAEKERELEDAEERLAKLEAE-- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 319 eankaIQDHLLEVEQSKDQMEKEMLEKIgRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTEL 398
Cdd:TIGR02169 331 -----IDKLLAEIEELEREIEEERKRRD-KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 399 YNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQ 478
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340
....*....|....*....|...
gi 37258 479 SSVLERDNRRMEIQVKDLSQQIR 501
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVR 507
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
181-282 |
1.23e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.35 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 181 KRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDL 257
Cdd:pfam05911 684 KRLKEEFEQLKSEKENLEVELASCTENLESTKsqlQESEQLIAELRSELASLKESNSLAETQLKCMAESYEDLETRLTEL 763
|
90 100
....*....|....*....|....*
gi 37258 258 LTKLKEAKEQQASMEEKFHNELNAH 282
Cdd:pfam05911 764 EAELNELRQKFEALEVELEEEKNCH 788
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
291-511 |
1.29e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 291 SAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMeKEMLEKIGRLEKELENANDLLSATKRKGAIL 370
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 371 SEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKA 450
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 37258 451 VASLSVKLEQAMKEIQRLQEDTDKA----NKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEAR 511
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLlarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
65-499 |
1.32e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 65 QERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQD---RNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYL 141
Cdd:PRK01156 151 RKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEklkSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNA 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 142 TEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKgNEILE 221
Cdd:PRK01156 231 MDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYK-NDIEN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 222 LKCNLENKKEEVSRLEEQMNGLktsnEHLQKHVEDLLTKLKEAKE--QQASMEEKFHNELNAHIklsNLYKSAADDSEAK 299
Cdd:PRK01156 310 KKQILSNIDAEINKYHAIIKKL----SVLQKDYNDYIKKKSRYDDlnNQILELEGYEMDYNSYL---KSIESLKKKIEEY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 300 SNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKemleKIGRLEKELENANDLLSATKRKGAILSEEELAAMS 379
Cdd:PRK01156 383 SKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS----KVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 380 PTAAAVAKIvkpgmklTELYNAYVETQDQLLLEKLENKRINKYLDE-IVKEVEAKAPILKRQREEYERAQKAVASLSVKL 458
Cdd:PRK01156 459 GTTLGEEKS-------NHIINHYNEKKSRLEEKIREIEIEVKDIDEkIVDLKKRKEYLESEEINKSINEYNKIESARADL 531
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 37258 459 EQAMKEIQRLQEDTDKANkqssvlERDNRRMEIQVKDLSQQ 499
Cdd:PRK01156 532 EDIKIKINELKDKHDKYE------EIKNRYKSLKLEDLDSK 566
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
42-372 |
2.35e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 42 RHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELE 121
Cdd:COG4717 101 EEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 122 AEKRdliRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQA------SDVSVKYREKRLEQEKELL----- 190
Cdd:COG4717 181 ELLE---QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEeleqleNELEAAALEERLKEARLLLliaaa 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 191 ---HSQNTWLNTELKTKTDELLALG---------------REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQK 252
Cdd:COG4717 258 llaLLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPE 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 253 HVEDLLTKLKEAKEQQASMEEKFH--NELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLE 330
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEelQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGE 417
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 37258 331 VEQSKDQMEKEML-EKIGRLEKEL-ENANDLLSATKRKGAILSE 372
Cdd:COG4717 418 LEELLEALDEEELeEELEELEEELeELEEELEELREELAELEAE 461
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
145-595 |
2.84e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 145 VKRLNEKLKESNTTKGEL-QLKLDELQASDVSVKYREKRLEQEKELLHSQNTwLNTELKTKTDELLALGREKGNeiLELK 223
Cdd:COG4717 48 LERLEKEADELFKPQGRKpELNLKELKELEEELKEAEEKEEEYAELQEELEE-LEEELEELEAELEELREELEK--LEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 224 CNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEkfhnelnAHIKLSNLYKSAADDSEAKSNEL 303
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE-------LQEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 304 TRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMlEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAA 383
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL-EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 384 AVAKIV---------KPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 454
Cdd:COG4717 277 GVLFLVlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 455 SVKLEQAmkEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHvirDEEVSSADISSSSEVIS 534
Cdd:COG4717 357 EELEEEL--QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEL---LGELEELLEALDEEELE 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 37258 535 QHLVSYRniEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRK 595
Cdd:COG4717 432 EELEELE--EELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAE 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
132-316 |
3.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 132 ERLSQELEYLTEDVKRLNEKLKESNTTKGELQ------LKLDELQASDVSVKYREKRLEQ-EKELlhsqntwlnTELKTK 204
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQerrealQRLAEYSWDEIDVASAEREIAElEAEL---------ERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 205 TDELLALGREkgneilelkcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKF----HNELN 280
Cdd:COG4913 684 SDDLAALEEQ-----------LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelRALLE 752
|
170 180 190
....*....|....*....|....*....|....*.
gi 37258 281 AHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKE 316
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
5-272 |
5.09e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 5 LQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRlshsqerlVNETR-ECQSLRLELE 83
Cdd:pfam15921 543 LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKE--------INDRRlELQEFKILKD 614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 84 KLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNE----KLKESNTTK 159
Cdd:pfam15921 615 KKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnKSEEMETTT 694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 160 GELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALgrEKGNEILELKCNLENK-----KEEVS 234
Cdd:pfam15921 695 NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDAL--QSKIQFLEEAMTNANKekhflKEEKN 772
|
250 260 270
....*....|....*....|....*....|....*...
gi 37258 235 RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASME 272
Cdd:pfam15921 773 KLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
51-325 |
6.43e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.91 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 51 EQQYFEIEKRlshsQERLVNE-TRECQSLRLELEKLNNQLKALTEKNKeleiaqdrniaiqsqfTRTKEELEAEKRDLIR 129
Cdd:PRK05771 27 ELGVVHIEDL----KEELSNErLRKLRSLLTKLSEALDKLRSYLPKLN----------------PLREEKKKVSVKSLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 130 TNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQ-----ASDVSVKYREKRLEQ------EKELLHSQNTWLN 198
Cdd:PRK05771 87 LIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEpwgnfDLDLSLLLGFKYVSVfvgtvpEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 199 TELKTKTDE------LLALGREKGNEILELKCNLENKKEEVS---RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQqa 269
Cdd:PRK05771 167 ENVEYISTDkgyvyvVVVVLKELSDEVEEELKKLGFERLELEeegTPSELIREIKEELEEIEKERESLLEELKELAKK-- 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 37258 270 smEEKFHneLNAHIKLSNLYKSAADDSEAKSNELTRAVE---------ELHKLLKEAGEANKAIQ 325
Cdd:PRK05771 245 --YLEEL--LALYEYLEIELERAEALSKFLKTDKTFAIEgwvpedrvkKLKELIDKATGGSAYVE 305
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
51-521 |
6.62e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.06 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 51 EQQYFEIEKRLSHSQERlvNETRECQSLRLELEK-LNNQLKALTEKNKELEIaqdRNIAIQSQFTRTkeeLEAEKRDLIR 129
Cdd:COG5022 793 WRLFIKLQPLLSLLGSR--KEYRSYLACIIKLQKtIKREKKLRETEEVEFSL---KAEVLIQKFGRS---LKAKKRFSLL 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 130 TNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQAsdvsvKYREKRLEQEKELLhsqntwLNTELKTKTDELL 209
Cdd:COG5022 865 KKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELES-----EIIELKKSLSSDLI------ENLEFKTELIARL 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 210 ALGREKGNEILELKCNLEnKKEEVSRLEEQMNGLKTSNEHLqkhvEDLLTKLKEAKEQQASMEEKFHN---ELNAHIKLs 286
Cdd:COG5022 934 KKLLNNIDLEEGPSIEYV-KLPELNKLHEVESKLKETSEEY----EDLLKKSTILVREGNKANSELKNfkkELAELSKQ- 1007
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 287 nlyKSAADDSEAKSNELTRAVEELH---KLLKEAGEA-------NKAIQDHLLEVEQSKDQME-----KEMLEKIGRLEK 351
Cdd:COG5022 1008 ---YGALQESTKQLKELPVEVAELQsasKIISSESTElsilkplQKLKGLLLLENNQLQARYKalklrRENSLLDDKQLY 1084
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 352 ELENANDLLSATKRKGAILSEEELAAMSP-TAAAVAKIVKPG-----MKLTELYNAYVETQDQLLLEKLENKRINKYLDE 425
Cdd:COG5022 1085 QLESTENLLKTINVKDLEVTNRNLVKPANvLQFIVAQMIKLNllqeiSKFLSQLVNTLEPVFQKLSVLQLELDGLFWEAN 1164
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 426 IVKEVEAKAPILKRQREEYEraqkaVASLSVKLEQAMKEIQRLQEDTDKANKQssvlERDNRRMEIQVKDLSQQIRVLLM 505
Cdd:COG5022 1165 LEALPSPPPFAALSEKRLYQ-----SALYDEKSKLSSSEVNDLKNELIALFSK----IFSGWPRGDKLKKLISEGWVPTE 1235
|
490
....*....|....*.
gi 37258 506 ELEEARGNHVIRDEEV 521
Cdd:COG5022 1236 YSTSLKGFNNLNKKFD 1251
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
25-267 |
8.17e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 25 LEKFLADQQSEIDGLKGRHEKfkVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQD 104
Cdd:COG4913 615 LEAELAELEEELAEAEERLEA--LEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 105 RNIAIQSQFtrtkEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKE-SNTTKGELQLKLDELQASDVsvkyREKRL 183
Cdd:COG4913 693 QLEELEAEL----EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAAL----GDAVE 764
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 184 EQEKELLHSQNTWLNTELKTKTDEL-----------------LALGREKGNEILELKCNLENkkEEVSRLEEQMNGLKTS 246
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELeramrafnrewpaetadLDADLESLPEYLALLDRLEE--DGLPEYEERFKELLNE 842
|
250 260
....*....|....*....|.
gi 37258 247 NEHlqKHVEDLLTKLKEAKEQ 267
Cdd:COG4913 843 NSI--EFVADLLSKLRRAIRE 861
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
226-513 |
8.58e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.67 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 226 LENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAhikLSNLYKSAADDSEAKSNELTR 305
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE---LLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 306 AVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAV 385
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 386 AKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEI 465
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 37258 466 QRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGN 513
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
56-366 |
9.43e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 56 EIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELE-IAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERL 134
Cdd:TIGR00606 238 EIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEkDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREK 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 135 SQELEYLTEDVKRLNEKLKESNTTKGELQLKLD--ELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKtdellalg 212
Cdd:TIGR00606 318 ERELVDCQRELEKLNKERRLLNQEKTELLVEQGrlQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSE-------- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 213 REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSA 292
Cdd:TIGR00606 390 RQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS 469
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 37258 293 ADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSK-DQMEKEMLEKIGRLEKELENANDLLSATKRK 366
Cdd:TIGR00606 470 SDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADlDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK 544
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
7-170 |
9.94e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.23 E-value: 9.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 7 QVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESE-----QQYFEIEKRLSHSQERLVNetrecqslrle 81
Cdd:PHA02562 242 ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcptctQQISEGPDRITKIKDKLKE----------- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37258 82 lekLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTN----------ERLSQELEYLTEDVKRLNEK 151
Cdd:PHA02562 311 ---LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVdkakkvkaaiEELQAEFVDNAEELAKLQDE 387
|
170
....*....|....*....
gi 37258 152 LKESNTTKGELQLKLDELQ 170
Cdd:PHA02562 388 LDKIVKTKSELVKEKYHRG 406
|
|
| |
