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Conserved domains on  [gi|371942968|gb|AEX60988|]
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cytochrome b, partial (mitochondrion) [Oligoryzomys moojeni]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-272 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 512.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   1 MTIMRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 161 V*WIWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270
                 ....*....|....*....|....*....|..
gi 371942968 241 FLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEW 272
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-272 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 512.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   1 MTIMRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 161 V*WIWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270
                 ....*....|....*....|....*....|..
gi 371942968 241 FLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEW 272
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-272 8.96e-91

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 273.97  E-value: 8.96e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  11 LK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  91 FICLFIHVGRGIYYGSYM----LNetWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 167 GFSVDKGTLTRFFAFH-FILPFI*TALVLVHLLFLHETGSN*PSG----LNSNSDKIPFHPYYTIKDLLGILLLLMVLMF 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270
                 ....*....|....*....|....*....|.
gi 371942968 242 LVLFFPDvlGDPDNYMPANPLNTPAHIKPEW 272
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDW 286
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 9.82e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.62  E-value: 9.82e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   9 PLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  89 MFFICLFIHVGRGIYYGSYM--LNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 371942968 167 GFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 2.30e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.07  E-value: 2.30e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   18 FI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   98 VGRGIYYG--SYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWGGFSVDKGTL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 371942968  176 TRFFAFHFILPFI*TALVLVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-272 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 512.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   1 MTIMRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 161 V*WIWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270
                 ....*....|....*....|....*....|..
gi 371942968 241 FLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEW 272
CYTB MTH00119
cytochrome b; Provisional
 1-272 1.03e-164

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 461.29  E-value: 1.03e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   1 MTIMRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 161 V*WIWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270
                 ....*....|....*....|....*....|..
gi 371942968 241 FLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273
CYTB MTH00131
cytochrome b; Provisional
 1-272 2.81e-162

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 455.27  E-value: 2.81e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   1 MTIMRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 161 V*WIWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270
                 ....*....|....*....|....*....|..
gi 371942968 241 FLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEW 272
CYTB MTH00074
cytochrome b; Provisional
 1-272 1.63e-159

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 448.36  E-value: 1.63e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   1 MTIMRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 161 V*WIWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270
                 ....*....|....*....|....*....|..
gi 371942968 241 FLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEW 273
CYTB MTH00191
cytochrome b; Provisional
 4-272 8.01e-159

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 445.90  E-value: 8.01e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   4 MRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*W 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 164 IWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260
                 ....*....|....*....|....*....
gi 371942968 244 LFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEW 269
CYTB MTH00156
cytochrome b; Provisional
 11-272 6.91e-156

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 438.06  E-value: 6.91e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  11 LK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  91 FICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWGGFSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 171 DKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLVLFFPDVL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260
                 ....*....|....*....|..
gi 371942968 251 GDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEW 262
CYTB MTH00145
cytochrome b; Provisional
 1-272 1.15e-147

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 418.15  E-value: 1.15e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   1 MTIMRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 161 V*WIWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270
                 ....*....|....*....|....*....|..
gi 371942968 241 FLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEW 273
CYTB MTH00034
cytochrome b; Validated
 4-272 2.13e-147

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 417.57  E-value: 2.13e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   4 MRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*W 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 164 IWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260
                 ....*....|....*....|....*....
gi 371942968 244 LFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEW 272
CYTB MTH00016
cytochrome b; Validated
 1-272 8.17e-144

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 408.30  E-value: 8.17e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   1 MTIMRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  81 YAHANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTL 160
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 161 V*WIWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLM 240
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        250       260       270
                 ....*....|....*....|....*....|..
gi 371942968 241 FLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEW 273
CYTB MTH00224
cytochrome b; Provisional
 4-272 8.74e-125

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 360.01  E-value: 8.74e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   4 MRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*W 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 164 IWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260
                 ....*....|....*....|....*....
gi 371942968 244 LFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEW 273
CYTB MTH00022
cytochrome b; Validated
 4-272 1.41e-123

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 357.09  E-value: 1.41e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   4 MRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*W 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 164 IWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260
                 ....*....|....*....|....*....
gi 371942968 244 LFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEW 271
CYTB MTH00053
cytochrome b; Provisional
 4-272 5.94e-117

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 340.14  E-value: 5.94e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   4 MRKNHPLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  84 ANGASMFFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*W 163
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 164 IWGGFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLV 243
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                        250       260
                 ....*....|....*....|....*....
gi 371942968 244 LFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00053 245 FLFPYSLGDAENFKQANPLVTPVHIKPEW 273
CYTB MTH00033
cytochrome b; Provisional
 10-272 1.96e-91

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 275.28  E-value: 1.96e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  10 LLK*INhSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASM 89
Cdd:MTH00033   8 LLEPVN-DIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  90 FFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWGGFS 169
Cdd:MTH00033  87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 170 VDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLVLF--FP 247
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEprIE 246

                        250       260
                 ....*....|....*....|....*
gi 371942968 248 DVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00033 247 TLLQDPENFIQANPLVTPVHIQPEW 271
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-272 8.96e-91

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 273.97  E-value: 8.96e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  11 LK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  91 FICLFIHVGRGIYYGSYM----LNetWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 167 GFSVDKGTLTRFFAFH-FILPFI*TALVLVHLLFLHETGSN*PSG----LNSNSDKIPFHPYYTIKDLLGILLLLMVLMF 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270
                 ....*....|....*....|....*....|.
gi 371942968 242 LVLFFPDvlGDPDNYMPANPLNTPAHIKPEW 272
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDW 286
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 9.82e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.62  E-value: 9.82e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   9 PLLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  89 MFFICLFIHVGRGIYYGSYM--LNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 371942968 167 GFSVDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 2.30e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.07  E-value: 2.30e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   18 FI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   98 VGRGIYYG--SYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWGGFSVDKGTL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 371942968  176 TRFFAFHFILPFI*TALVLVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00086
cytochrome b; Provisional
 19-272 1.95e-82

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 251.40  E-value: 1.95e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  19 I*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIHV 98
Cdd:MTH00086   8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  99 GRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWGGFSVDKGTLTRF 178
Cdd:MTH00086  88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 179 FAFHFILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKDlLGILLLLMVLMFLVLFFPDVLGDPDNYMP 258
Cdd:MTH00086 168 FVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIE 246

                        250
                 ....*....|....
gi 371942968 259 ANPLNTPAHIKPEW 272
Cdd:MTH00086 247 ADPMMSPVHIVPEW 260
CYTB MTH00046
cytochrome b; Validated
 10-272 6.17e-63

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 201.36  E-value: 6.17e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  10 LLK*INHSFI*LPTPSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  90 FFICLFIHVGRGIYYGSYMLNETWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWGGFS 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 170 VDKGTLTRFFAFHFILPFI*TALVLVHLLFLHETGSN*P-SGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLVLFFPD 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260
                 ....*....|....*....|....
gi 371942968 249 VLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEW 264
PRK03735 PRK03735
cytochrome b6; Provisional
 33-186 1.24e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 127.14  E-value: 1.24e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  33 FGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIHVGRGIYYGSYMLNE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 371942968 112 -TWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWGGFSVDKGTLTRFFAFH-FILP 186
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLP 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-228 2.08e-35

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 124.66  E-value: 2.08e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968   88 SMFFICLFIHVGRGIYYGSYM----LNetWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*W 163
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRkpreLN--WIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWL 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 371942968  164 IWGGFSVDKGTLTRFFAFHF-ILPFI*TALVLVHLLFLHETGSN*PSGLNSNSDKIPFHPYYTIKD 228
Cdd:pfam13631  79 LFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
petB CHL00070
cytochrome b6
 24-188 5.26e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 114.82  E-value: 5.26e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968  24 PSN*SAWWNFGSLLG*CLMVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYAHANGASMFFICLFIHVGRGIY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 371942968 104 YGSYMLNE--TWNIGI*L*LTTMATAFVGYVLPWGQMS*WGATVITNLLSAIPYIGTTLV*WIWGGFSVDKGTLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186


                 ....*...
gi 371942968 182 H-FILPFI 188
Cdd:CHL00070 187 HtFVLPLL 194
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-272 3.84e-16

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 73.45  E-value: 3.84e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 371942968 208 PSGLNSNSDKIPFHPYYTIKDLLGILLLLMVLMFLVLFFPDVLGDPDNYMPANPLNTPAHIKPEW 272
Cdd:cd00290    2 PLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEW 66
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-272 2.68e-04

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 39.38  E-value: 2.68e-04
                          10
                  ....*....|....*
gi 371942968  258 PANPLNTPAHIKPEW 272
Cdd:pfam00032   1 PANPLVTPAHIVPEW 15
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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