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Conserved domains on  [gi|366991787|ref|XP_003675659|]
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hypothetical protein NCAS_0C03030 [Naumovozyma castellii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUP super family cl02924
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 113-203 8.58e-09

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


The actual alignment was detected with superfamily member pfam00674:

Pssm-ID: 395546  Cd Length: 96  Bit Score: 51.53  E-value: 8.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 366991787  113 FLSYLLIFGIFYTLPFIFWYGLLILLKIdkkdsvkESQPLSLFKEIIDRTPNSTTASWDITTSHLNDMLYEGKKWPTKYM 192
Cdd:pfam00674   1 ILVLVLIILLLICIVFPNIRMFGSSVSD-------EHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYY 73

                          90
                  ....*....|.
gi 366991787  193 MWDGKECHAWF 203
Cdd:pfam00674  74 FYDGIDCQEFF 84
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 113-203 8.58e-09

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 51.53  E-value: 8.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 366991787  113 FLSYLLIFGIFYTLPFIFWYGLLILLKIdkkdsvkESQPLSLFKEIIDRTPNSTTASWDITTSHLNDMLYEGKKWPTKYM 192
Cdd:pfam00674   1 ILVLVLIILLLICIVFPNIRMFGSSVSD-------EHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYY 73

                          90
                  ....*....|.
gi 366991787  193 MWDGKECHAWF 203
Cdd:pfam00674  74 FYDGIDCQEFF 84
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 113-203 8.58e-09

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 51.53  E-value: 8.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 366991787  113 FLSYLLIFGIFYTLPFIFWYGLLILLKIdkkdsvkESQPLSLFKEIIDRTPNSTTASWDITTSHLNDMLYEGKKWPTKYM 192
Cdd:pfam00674   1 ILVLVLIILLLICIVFPNIRMFGSSVSD-------EHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYY 73

                          90
                  ....*....|.
gi 366991787  193 MWDGKECHAWF 203
Cdd:pfam00674  74 FYDGIDCQEFF 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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