|
Name |
Accession |
Description |
Interval |
E-value |
| Utp21 |
pfam04192 |
Utp21 specific WD40 associated putative domain; Utp21 is a subunit of U3 snoRNP, which is ... |
714-937 |
3.67e-99 |
|
Utp21 specific WD40 associated putative domain; Utp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. :
Pssm-ID: 461219 Cd Length: 209 Bit Score: 309.08 E-value: 3.67e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 714 EQIDKELLTLSIGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFLQLSGEKVGDEASVREGIAHETPEEihrrdqEAQ 793
Cdd:pfam04192 1 DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASVEAQEEEEEEEE------EER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 794 KKLdaeeqmNKFkvtGRLGFESHFTKQLREGSQSKDYSSLLATLINFSPAAVDLEIRSLNSFEPFDEIVWFIDALTQGLK 873
Cdd:pfam04192 75 SRL------LKL---GSLGFESEFTKLLREGSETGDYTPFLEYLKSLSPSAIDLEIRSLNSGGPLEELVSFIRALTSRLK 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 365764196 874 SNKNFELYETFMSLLFKAHGDVIHANNkNQDIASALQNWEDVHKKE-DRLDDLVKFCMGVAAFVT 937
Cdd:pfam04192 146 SNRDFELVQAYMAVFLKLHGDVIHSNE-EEELREALEEWKSVQEEEwERLDELVGYCSGVVGFLR 209
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
284-613 |
4.12e-44 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. :
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 161.35 E-value: 4.12e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 284 IHVLKnIHResyGGVTQATFLNGQPIIVTSGGDNSLKeyVFDpslsqgsgdvvVQPPRYLRSRGGHSQPPSYIAFaDSQS 363
Cdd:cd00200 2 RRTLK-GHT---GGVTCVAFSPDGKLLATGSGDGTIK--VWD-----------LETGELLRTLKGHTGPVRDVAA-SADG 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 364 HFMLSASKDRSLWSFSLRKDAQSQEMSQrlHKKqdggrvggstikskfpEIVALAIENARigeweNIITAHKDEKFARTW 443
Cdd:cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTG--HTS----------------YVSSVAFSPDG-----RILSSSSRDKTIKVW 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 444 DMRNKRVGRwTFDTTDDgFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLD 523
Cdd:cd00200 121 DVETGKCLT-TLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 524 GIVGFYDFNKSTLLGKLKL-DAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVS 602
Cdd:cd00200 199 GTIKLWDLSTGKCLGTLRGhENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
330
....*....|.
gi 365764196 603 ASLDSTIRTWD 613
Cdd:cd00200 279 GSADGTIRIWD 289
|
|
| WD40 super family |
cl29593 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
81-377 |
5.54e-12 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. The actual alignment was detected with superfamily member cd00200:
Pssm-ID: 475233 [Multi-domain] Cd Length: 289 Bit Score: 67.36 E-value: 5.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 81 VALSAHFHYVYAAYENKVGI---YKRGIEEHFLELETDANVEHLCI-FGDYLCASTDDNSIFIYKKSDPQdkypsefytk 156
Cdd:cd00200 15 VAFSPDGKLLATGSGDGTIKvwdLETGELLRTLKGHTGPVRDVAASaDGTYLASGSSDKTIRLWDLETGE---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 157 lTVTEIQG--GEIVSLqhlaTYLNKLTVVTKS----NVLLFNVRTGKLVFTSDEFPDQITTAEPAPVLDIIALGTVTGEV 230
Cdd:cd00200 85 -CVRTLTGhtSYVSSV----AFSPDGRILSSSsrdkTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 231 IMFNMRKGKRIRTIKIPQSRISSLSFRTDGSSHLSvGTSSGDLIFYDLDRRSRIHVLKnIHREsygGVTQATFLNGQPII 310
Cdd:cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLSTGKCLGTLR-GHEN---GVNSVAFSPDGYLL 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 365764196 311 VTSGGDNSLKeyVFDpslsqgsgdvvVQPPRYLRSRGGHSQPPSYIAFADSqSHFMLSASKDRS--LWS 377
Cdd:cd00200 235 ASGSEDGTIR--VWD-----------LRTGECVQTLSGHTNSVTSLAWSPD-GKRLASGSADGTirIWD 289
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Utp21 |
pfam04192 |
Utp21 specific WD40 associated putative domain; Utp21 is a subunit of U3 snoRNP, which is ... |
714-937 |
3.67e-99 |
|
Utp21 specific WD40 associated putative domain; Utp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA.
Pssm-ID: 461219 Cd Length: 209 Bit Score: 309.08 E-value: 3.67e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 714 EQIDKELLTLSIGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFLQLSGEKVGDEASVREGIAHETPEEihrrdqEAQ 793
Cdd:pfam04192 1 DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASVEAQEEEEEEEE------EER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 794 KKLdaeeqmNKFkvtGRLGFESHFTKQLREGSQSKDYSSLLATLINFSPAAVDLEIRSLNSFEPFDEIVWFIDALTQGLK 873
Cdd:pfam04192 75 SRL------LKL---GSLGFESEFTKLLREGSETGDYTPFLEYLKSLSPSAIDLEIRSLNSGGPLEELVSFIRALTSRLK 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 365764196 874 SNKNFELYETFMSLLFKAHGDVIHANNkNQDIASALQNWEDVHKKE-DRLDDLVKFCMGVAAFVT 937
Cdd:pfam04192 146 SNRDFELVQAYMAVFLKLHGDVIHSNE-EEELREALEEWKSVQEEEwERLDELVGYCSGVVGFLR 209
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
284-613 |
4.12e-44 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 161.35 E-value: 4.12e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 284 IHVLKnIHResyGGVTQATFLNGQPIIVTSGGDNSLKeyVFDpslsqgsgdvvVQPPRYLRSRGGHSQPPSYIAFaDSQS 363
Cdd:cd00200 2 RRTLK-GHT---GGVTCVAFSPDGKLLATGSGDGTIK--VWD-----------LETGELLRTLKGHTGPVRDVAA-SADG 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 364 HFMLSASKDRSLWSFSLRKDAQSQEMSQrlHKKqdggrvggstikskfpEIVALAIENARigeweNIITAHKDEKFARTW 443
Cdd:cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTG--HTS----------------YVSSVAFSPDG-----RILSSSSRDKTIKVW 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 444 DMRNKRVGRwTFDTTDDgFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLD 523
Cdd:cd00200 121 DVETGKCLT-TLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 524 GIVGFYDFNKSTLLGKLKL-DAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVS 602
Cdd:cd00200 199 GTIKLWDLSTGKCLGTLRGhENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
330
....*....|.
gi 365764196 603 ASLDSTIRTWD 613
Cdd:cd00200 279 GSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
236-654 |
3.20e-34 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 136.19 E-value: 3.20e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 236 RKGKRIRTIKIPQSRISSLSFRTDGSSHLSvGTSSGDLIFYDLDRRSRIHVLKNIHresyGGVTQATFLNGQPIIVTSGG 315
Cdd:COG2319 24 ALGALLLLLLGLAAAVASLAASPDGARLAA-GAGDLTLLLLDAAAGALLATLLGHT----AAVLSVAFSPDGRLLASASA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 316 DNSLKeyVFDpslsqgsgdvvVQPPRYLRSRGGHSQPPSYIAFADSqSHFMLSASKDRS--LWsfslrkDAQSQEMSQRL 393
Cdd:COG2319 99 DGTVR--LWD-----------LATGLLLRTLTGHTGAVRSVAFSPD-GKTLASGSADGTvrLW------DLATGKLLRTL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 394 HKKQDGgrvggstikskfpeIVALAIenARIGEWenIITAHKDEKfARTWDMRNKRVGRwTFdTTDDGFVKSVAMSQCGN 473
Cdd:COG2319 159 TGHSGA--------------VTSVAF--SPDGKL--LASGSDDGT-VRLWDLATGKLLR-TL-TGHTGAVRSVAFSPDGK 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 474 FGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGI--SLDGmnRKMVSCGLDGIVGFYDFNKSTLLGKLK-LDAPITAMV 550
Cdd:COG2319 218 LLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVafSPDG--RLLASGSADGTVRLWDLATGELLRTLTgHSGGVNSVA 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 551 YHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGGCIDGIIV-DNVA 629
Cdd:COG2319 296 FSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGhTGAV 375
|
410 420
....*....|....*....|....*
gi 365764196 630 TNVKFSPNGDLLATTHVTGNgICIW 654
Cdd:COG2319 376 TSVAFSPDGRTLASGSADGT-VRLW 399
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
81-377 |
5.54e-12 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 67.36 E-value: 5.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 81 VALSAHFHYVYAAYENKVGI---YKRGIEEHFLELETDANVEHLCI-FGDYLCASTDDNSIFIYKKSDPQdkypsefytk 156
Cdd:cd00200 15 VAFSPDGKLLATGSGDGTIKvwdLETGELLRTLKGHTGPVRDVAASaDGTYLASGSSDKTIRLWDLETGE---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 157 lTVTEIQG--GEIVSLqhlaTYLNKLTVVTKS----NVLLFNVRTGKLVFTSDEFPDQITTAEPAPVLDIIALGTVTGEV 230
Cdd:cd00200 85 -CVRTLTGhtSYVSSV----AFSPDGRILSSSsrdkTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 231 IMFNMRKGKRIRTIKIPQSRISSLSFRTDGSSHLSvGTSSGDLIFYDLDRRSRIHVLKnIHREsygGVTQATFLNGQPII 310
Cdd:cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLSTGKCLGTLR-GHEN---GVNSVAFSPDGYLL 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 365764196 311 VTSGGDNSLKeyVFDpslsqgsgdvvVQPPRYLRSRGGHSQPPSYIAFADSqSHFMLSASKDRS--LWS 377
Cdd:cd00200 235 ASGSEDGTIR--VWD-----------LRTGECVQTLSGHTNSVTSLAWSPD-GKRLASGSADGTirIWD 289
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
574-613 |
1.91e-08 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 50.77 E-value: 1.91e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 365764196 574 TQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWD 613
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
576-613 |
1.56e-07 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 48.50 E-value: 1.56e-07
10 20 30
....*....|....*....|....*....|....*...
gi 365764196 576 RVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWD 613
Cdd:pfam00400 2 KLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
216-277 |
1.40e-05 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 44.19 E-value: 1.40e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 365764196 216 PVLDIIALGTVTGEVIMFNmRKGKRIRTIKIP--QSRISSLSFRTDGSShLSVGTSSGDLIFYD 277
Cdd:pfam12894 5 PTMDLIALATEDGELLLHR-LNWQRVWTLSPDkeDLEVTSLAWRPDGKL-LAVGYSDGTVRLLD 66
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Utp21 |
pfam04192 |
Utp21 specific WD40 associated putative domain; Utp21 is a subunit of U3 snoRNP, which is ... |
714-937 |
3.67e-99 |
|
Utp21 specific WD40 associated putative domain; Utp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA.
Pssm-ID: 461219 Cd Length: 209 Bit Score: 309.08 E-value: 3.67e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 714 EQIDKELLTLSIGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFLQLSGEKVGDEASVREGIAHETPEEihrrdqEAQ 793
Cdd:pfam04192 1 DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASVEAQEEEEEEEE------EER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 794 KKLdaeeqmNKFkvtGRLGFESHFTKQLREGSQSKDYSSLLATLINFSPAAVDLEIRSLNSFEPFDEIVWFIDALTQGLK 873
Cdd:pfam04192 75 SRL------LKL---GSLGFESEFTKLLREGSETGDYTPFLEYLKSLSPSAIDLEIRSLNSGGPLEELVSFIRALTSRLK 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 365764196 874 SNKNFELYETFMSLLFKAHGDVIHANNkNQDIASALQNWEDVHKKE-DRLDDLVKFCMGVAAFVT 937
Cdd:pfam04192 146 SNRDFELVQAYMAVFLKLHGDVIHSNE-EEELREALEEWKSVQEEEwERLDELVGYCSGVVGFLR 209
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
284-613 |
4.12e-44 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 161.35 E-value: 4.12e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 284 IHVLKnIHResyGGVTQATFLNGQPIIVTSGGDNSLKeyVFDpslsqgsgdvvVQPPRYLRSRGGHSQPPSYIAFaDSQS 363
Cdd:cd00200 2 RRTLK-GHT---GGVTCVAFSPDGKLLATGSGDGTIK--VWD-----------LETGELLRTLKGHTGPVRDVAA-SADG 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 364 HFMLSASKDRSLWSFSLRKDAQSQEMSQrlHKKqdggrvggstikskfpEIVALAIENARigeweNIITAHKDEKFARTW 443
Cdd:cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTG--HTS----------------YVSSVAFSPDG-----RILSSSSRDKTIKVW 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 444 DMRNKRVGRwTFDTTDDgFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLD 523
Cdd:cd00200 121 DVETGKCLT-TLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 524 GIVGFYDFNKSTLLGKLKL-DAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVS 602
Cdd:cd00200 199 GTIKLWDLSTGKCLGTLRGhENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
330
....*....|.
gi 365764196 603 ASLDSTIRTWD 613
Cdd:cd00200 279 GSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
236-654 |
3.20e-34 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 136.19 E-value: 3.20e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 236 RKGKRIRTIKIPQSRISSLSFRTDGSSHLSvGTSSGDLIFYDLDRRSRIHVLKNIHresyGGVTQATFLNGQPIIVTSGG 315
Cdd:COG2319 24 ALGALLLLLLGLAAAVASLAASPDGARLAA-GAGDLTLLLLDAAAGALLATLLGHT----AAVLSVAFSPDGRLLASASA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 316 DNSLKeyVFDpslsqgsgdvvVQPPRYLRSRGGHSQPPSYIAFADSqSHFMLSASKDRS--LWsfslrkDAQSQEMSQRL 393
Cdd:COG2319 99 DGTVR--LWD-----------LATGLLLRTLTGHTGAVRSVAFSPD-GKTLASGSADGTvrLW------DLATGKLLRTL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 394 HKKQDGgrvggstikskfpeIVALAIenARIGEWenIITAHKDEKfARTWDMRNKRVGRwTFdTTDDGFVKSVAMSQCGN 473
Cdd:COG2319 159 TGHSGA--------------VTSVAF--SPDGKL--LASGSDDGT-VRLWDLATGKLLR-TL-TGHTGAVRSVAFSPDGK 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 474 FGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGI--SLDGmnRKMVSCGLDGIVGFYDFNKSTLLGKLK-LDAPITAMV 550
Cdd:COG2319 218 LLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVafSPDG--RLLASGSADGTVRLWDLATGELLRTLTgHSGGVNSVA 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 551 YHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGGCIDGIIV-DNVA 629
Cdd:COG2319 296 FSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGhTGAV 375
|
410 420
....*....|....*....|....*
gi 365764196 630 TNVKFSPNGDLLATTHVTGNgICIW 654
Cdd:COG2319 376 TSVAFSPDGRTLASGSADGT-VRLW 399
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
188-616 |
1.22e-32 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 131.19 E-value: 1.22e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 188 VLLFNVRTGKLVFTSDEFPDQITTAEPAPVLDIIALGTVTGEVIMFNMRKGKRIRTIKIPQSRISSLSFRTDGSsHLSVG 267
Cdd:COG2319 18 LALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGR-LLASA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 268 TSSGDLIFYDLDRRSRIHVLKNiHResyGGVTQATFL-NGQpIIVTSGGDNSLKeyVFDpslsqgsgdvvVQPPRYLRSR 346
Cdd:COG2319 97 SADGTVRLWDLATGLLLRTLTG-HT---GAVRSVAFSpDGK-TLASGSADGTVR--LWD-----------LATGKLLRTL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 347 GGHSQPPSYIAF-ADSQshFMLSASKDRS--LWsfslrkDAQSQEMSQRLHKKQDGgrvggstikskfpeIVALAIenAR 423
Cdd:COG2319 159 TGHSGAVTSVAFsPDGK--LLASGSDDGTvrLW------DLATGKLLRTLTGHTGA--------------VRSVAF--SP 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 424 IGEWenIITAHKDeKFARTWDMRNKRVGRwTFdTTDDGFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKR 503
Cdd:COG2319 215 DGKL--LASGSAD-GTVRLWDLATGKLLR-TL-TGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSG 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 504 AVTGI--SLDGmnRKMVSCGLDGIVGFYDFNKSTLLGKLK-LDAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQ 580
Cdd:COG2319 290 GVNSVafSPDG--KLLASGSDDGTVRLWDLATGKLLRTLTgHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRT 367
|
410 420 430
....*....|....*....|....*....|....*.
gi 365764196 581 LWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPT 616
Cdd:COG2319 368 LTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
430-654 |
3.41e-26 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 109.73 E-value: 3.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 430 IITAHKDEKfARTWDMRNKRVGRwtFDTTDDGFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGIS 509
Cdd:cd00200 24 LATGSGDGT-IKVWDLETGELLR--TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 510 LDGMNRKMVSCGLDGIVGFYDFNKSTLLGKLKL-DAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRI 588
Cdd:cd00200 101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGhTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 365764196 589 TAFDFSPEGRWIVSASLDSTIRTWDLPTGGCIDGIIVDNVA-TNVKFSPNGDLLATTHVTGNgICIW 654
Cdd:cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGvNSVAFSPDGYLLASGSEDGT-IRVW 246
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
440-654 |
3.31e-23 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 103.07 E-value: 3.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 440 ARTWDMRNKRVGRWTFDTTDDGFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVS 519
Cdd:COG2319 16 LALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLAS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 520 CGLDGIVGFYDFNKSTLLGKLK-LDAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGR 598
Cdd:COG2319 96 ASADGTVRLWDLATGLLLRTLTgHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGK 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 365764196 599 WIVSASLDSTIRTWDLPTGGCIDGIIV-DNVATNVKFSPNGDLLATTHvTGNGICIW 654
Cdd:COG2319 176 LLASGSDDGTVRLWDLATGKLLRTLTGhTGAVRSVAFSPDGKLLASGS-ADGTVRLW 231
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
461-643 |
4.75e-17 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 82.77 E-value: 4.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 461 GFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNkstllgkl 540
Cdd:cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 541 kldapitamvyhrssdlfalalddlsivvidavTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGGC- 619
Cdd:cd00200 82 ---------------------------------TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCl 128
|
170 180
....*....|....*....|....*.
gi 365764196 620 --IDGIivDNVATNVKFSPNGDLLAT 643
Cdd:cd00200 129 ttLRGH--TDWVNSVAFSPDGTFVAS 152
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
81-377 |
5.54e-12 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 67.36 E-value: 5.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 81 VALSAHFHYVYAAYENKVGI---YKRGIEEHFLELETDANVEHLCI-FGDYLCASTDDNSIFIYKKSDPQdkypsefytk 156
Cdd:cd00200 15 VAFSPDGKLLATGSGDGTIKvwdLETGELLRTLKGHTGPVRDVAASaDGTYLASGSSDKTIRLWDLETGE---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 157 lTVTEIQG--GEIVSLqhlaTYLNKLTVVTKS----NVLLFNVRTGKLVFTSDEFPDQITTAEPAPVLDIIALGTVTGEV 230
Cdd:cd00200 85 -CVRTLTGhtSYVSSV----AFSPDGRILSSSsrdkTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 231 IMFNMRKGKRIRTIKIPQSRISSLSFRTDGSSHLSvGTSSGDLIFYDLDRRSRIHVLKnIHREsygGVTQATFLNGQPII 310
Cdd:cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLSTGKCLGTLR-GHEN---GVNSVAFSPDGYLL 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 365764196 311 VTSGGDNSLKeyVFDpslsqgsgdvvVQPPRYLRSRGGHSQPPSYIAFADSqSHFMLSASKDRS--LWS 377
Cdd:cd00200 235 ASGSEDGTIR--VWD-----------LRTGECVQTLSGHTNSVTSLAWSPD-GKRLASGSADGTirIWD 289
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
574-613 |
1.91e-08 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 50.77 E-value: 1.91e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 365764196 574 TQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWD 613
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
576-613 |
1.56e-07 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 48.50 E-value: 1.56e-07
10 20 30
....*....|....*....|....*....|....*...
gi 365764196 576 RVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWD 613
Cdd:pfam00400 2 KLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
216-277 |
1.40e-05 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 44.19 E-value: 1.40e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 365764196 216 PVLDIIALGTVTGEVIMFNmRKGKRIRTIKIP--QSRISSLSFRTDGSShLSVGTSSGDLIFYD 277
Cdd:pfam12894 5 PTMDLIALATEDGELLLHR-LNWQRVWTLSPDkeDLEVTSLAWRPDGKL-LAVGYSDGTVRLLD 66
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
504-659 |
3.39e-05 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 46.23 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 504 AVTGISLDGmNRKMVSCGLDGIVGFYDFNKSTLLGKLKLDAPITAMVYHRSSD-LFALALDDLSIVVIDAVTQRVVRQlW 582
Cdd:COG3391 71 DGADAGADG-RRLYVANSGSGRVSVIDLATGKVVATIPVGGGPRGLAVDPDGGrLYVADSGNGRVSVIDTATGKVVAT-I 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 583 GHSNRITAFDFSPEGRWIVSASLDST-----IRTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNR 657
Cdd:COG3391 149 PVGAGPHGIAVDPDGKRLYVANSGSNtvsviVSVIDTATGKVVATIPVGGGPVGVAVSPDGRRLYVANRGSNTSNGGSNT 228
|
..
gi 365764196 658 AQ 659
Cdd:COG3391 229 VS 230
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
567-655 |
7.51e-03 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 38.11 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365764196 567 IVVIDAVTQRVvRQLWGHSNRITAFDFSPEGRWIVSASLDST---IRTWDLPTGGcidGIIVDNVATNVKFSPNGDLLAT 643
Cdd:COG0823 57 IYVVDADGGEP-RRLTFGGGYNASPSWSPDGKRLAFVSRSDGrfdIYVLDLDGGA---PRRLTDGPGSPSWSPDGRRIVF 132
|
90
....*....|..
gi 365764196 644 THVTGNGICIWT 655
Cdd:COG0823 133 SSDRGGRPDLYV 144
|
|
|